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1.
Opt Express ; 30(17): 29969-29978, 2022 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-36242109

RESUMEN

Due to geometric overlap factor, the backscattering lidar is not suitable to detect atmospheric characteristics near the ground. A new sidescattering lidar system consisting of three CCD cameras and one CW laser is developed for the first time to measure the profiles of the backscattering coefficient of atmospheric aerosols across the whole troposphere, which has no detection blind zone near the ground. The aerosol relative phase function was detected by its horizontal CCD channel. The vertical distribution of aerosol backscattering coefficient across the whole troposphere was observed by the other two CCD cameras of vertical channel. The reasons for choosing three CCD cameras and their respective functions are analyzed in detail. Comparative experiments and continuous observations indicate that the new sidescattering lidar system including three CCD cameras is simple in structure and reliable in performance with low cost as well.

2.
Dig Dis Sci ; 67(12): 5580-5592, 2022 12.
Artículo en Inglés | MEDLINE | ID: mdl-35879512

RESUMEN

BACKGROUND AND AIMS: Recent studies have shown that changes in the intestinal microbiota contribute to the pathogenesis of irritable bowel syndrome (IBS). This study aimed to investigate the characteristics of the fecal and intestinal mucosal microbiota in IBS patients, and the correlation between microbiota and clinical manifestations. METHODS: Fecal and intestinal mucosal samples were collected from 14 constipation-predominant IBS (IBS-C) patients, 20 diarrhea-predominant IBS (IBS-D) patients, and 20 healthy controls (HCs). 16S rRNA gene sequencing and fluorescence in situ hybridization were used for the analysis of samples. RESULTS: Community richness and diversity of the fecal microbiota in IBS patients were significantly reduced compared with the HCs. The mucosal samples in IBS patients showed decreased Bifidobacterium and increased Bacteroides caccae compared with HCs; Eubacterium and Roseburia were decreased in IBS-C patients and increased in IBS-D patients. A comparison of the fecal and mucosal microbiota in IBS patients showed significantly increased Bifidobacterium in fecal samples and a decrease in mucosal samples in IBS-C patients; Bacteroides caccae and Roseburia were significantly reduced in fecal samples and increased in mucosal samples of IBS patients. A correlation between microbiota and clinical manifestations in IBS patients showed that Bacteroides caccae and Roseburia in fecal samples and Bifidobacterium and Eubacterium in mucosal samples were associated with abdominal pain and distention. CONCLUSIONS: Distinct differences exist between the fecal and intestinal mucosal microbiota in IBS patients, with the changes in the latter appearing more consistent with the pathophysiology of IBS. Changes in intestinal microbiota were associated with the clinical manifestations in IBS.


Asunto(s)
Microbioma Gastrointestinal , Síndrome del Colon Irritable , Microbiota , Humanos , Síndrome del Colon Irritable/complicaciones , Microbioma Gastrointestinal/genética , ARN Ribosómico 16S/genética , Hibridación Fluorescente in Situ , Diarrea/etiología , Heces/microbiología , Clostridiales
3.
J Bioenerg Biomembr ; 53(2): 213-222, 2021 04.
Artículo en Inglés | MEDLINE | ID: mdl-33515345

RESUMEN

TRIM15 is a member of tripartite motif-containing protein (TRIM) protein family, which plays important roles in several cancers. The aim of the present study was to evaluate the role of TRIM15 in esophageal squamous cell carcinoma (ESCC). Our results showed that TRIM15 was upregulated in human ESCC tissues and cell lines. In vitro studies showed that knockdown of TRIM15 significantly inhibited the proliferation, migration, and invasion of ESCC cells. Knockdown of TRIM15 caused a significant increase in E-cadherin expression, as well as decreases in expression of N-cadherin and Vimentin proteins. Moreover, in vivo assay proved that tumor growth was suppressed by knockdown of TRIM15. Furthermore, the protein expression levels of ß-catenin, C-myc, and CyclinD1 were markedly decreased in sh-TRIM15-infected ESCC cells. Additionally, treatment with LiCl reversed the inhibitory effects of TRIM15 knockdown on ESCC cells. In conclusion, these findings indicated that knockdown of TRIM15 blocked the growth and metastasis of ESCC in part through inhibiting the Wnt/ß-catenin signaling pathway. Thus, TRIM15 might serve as a promising therapeutic target for ESCC.


Asunto(s)
Proteínas de Unión al ADN/metabolismo , Neoplasias Esofágicas/metabolismo , Carcinoma de Células Escamosas de Esófago/metabolismo , Vía de Señalización Wnt , Animales , Línea Celular Tumoral , Movimiento Celular/fisiología , Proliferación Celular/fisiología , Neoplasias Esofágicas/genética , Neoplasias Esofágicas/patología , Carcinoma de Células Escamosas de Esófago/genética , Carcinoma de Células Escamosas de Esófago/patología , Humanos , Ratones , Ratones Endogámicos BALB C , Ratones Desnudos , Invasividad Neoplásica
4.
Plant Physiol ; 182(1): 167-184, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31378719

RESUMEN

Histone deacetylase (HDAC) proteins participate in diverse and tissue-specific developmental processes by forming various corepressor complexes with different regulatory subunits. An important HDAC machinery hub, the Histone Deacetylase Complex1 (HDC1) protein, participates in multiple protein-protein interactions and regulates organ size in plants. However, the mechanistic basis for this regulation remains unclear. Here, we identified a cucumber (Cucumis sativus) short-fruit mutant (sf2) with a phenotype that includes repressed cell proliferation. SF2 encodes an HDC1 homolog, and its expression is enriched in meristematic tissues, consistent with a role in regulating cell proliferation through the HDAC complex. A weak sf2 allele impairs HDAC targeting to chromatin, resulting in elevated levels of histone acetylation. Genome-wide mapping revealed that SF2 directly targets and promotes histone deacetylation associated with key genes involved in multiple phytohormone pathways and cell cycle regulation, by either directly repressing or activating their expression. We further show that SF2 controls fruit cell proliferation through targeting the biosynthesis and metabolism of cytokinin and polyamines. Our findings reveal a complex regulatory network of fruit cell proliferation mediated by HDC1 and elucidate patterns of HDC1-mediated regulation of gene expression.


Asunto(s)
Cucumis sativus/metabolismo , Frutas/metabolismo , Histona Desacetilasas/metabolismo , Proliferación Celular/genética , Proliferación Celular/fisiología , Mapeo Cromosómico/métodos , Cucumis sativus/genética , Frutas/genética , Genoma de Planta/genética , Histona Desacetilasas/genética , Procesamiento Proteico-Postraduccional/genética , Procesamiento Proteico-Postraduccional/fisiología
5.
Plant Physiol ; 182(2): 908-918, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31843803

RESUMEN

Flowering time plays a crucial role in the geographical adaptation of most crops during domestication. Cucumber (Cucumis sativus) is a major vegetable crop worldwide. From its tropical origin on the southern Asian continent, cucumber has spread over a wide latitudinal cline, but the molecular mechanisms underlying this latitudinal adaptation and the expansion of domesticated cucumber are largely unclear. Here, we report the cloning of two flowering time loci from two distinct cucumber populations and show that two large deletions upstream from FLOWERING LOCUS T (FT) are associated with higher expression of FT and earlier flowering. We determined that the two large deletions are pervasive and occurred independently in Eurasian and East-Asian populations. Nucleotide diversity analysis further revealed that the FT locus region of the cucumber genome contains a signature for a selective sweep during domestication. Our results suggest that large genetic structural variations upstream from FT were selected for and have been important in the geographic spread of cucumber from its tropical origin to higher latitudes.


Asunto(s)
Aclimatación/genética , Adaptación Fisiológica/genética , Cucumis sativus/metabolismo , Flores/metabolismo , Proteínas de Unión a Fosfatidiletanolamina/metabolismo , Proteínas de Plantas/metabolismo , Mapeo Cromosómico/métodos , Cucumis sativus/genética , Domesticación , Flores/genética , Estudios de Asociación Genética , Ligamiento Genético , Genotipo , Fenotipo , Proteínas de Unión a Fosfatidiletanolamina/genética , Filogenia , Proteínas de Plantas/genética , Polimorfismo de Nucleótido Simple
6.
Neuropathology ; 41(5): 371-375, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34374134

RESUMEN

Calcifying pseudoneoplasms of the neuraxis (CAPNON) are rare, slow-growing, benign lesions occurring throughout the neuroaxis that are frequently misdiagnosed and overlooked by clinicians. Here, we report a case of a 56-year-old woman who presented with a history of recurrent headache for the previous six years. Magnetic resonance imaging (MRI) revealed a 2.3-cm-sized solid mass in the right frontal lobe that was surrounded by marked edematous areas. The lesion demonstrated dense calcification and avid enhancement. The lesion was initially diagnosed as oligodendroglioma, and then found to be CAPNON based on histopathology of a surgically resected tissue. Genetic analysis revealed a nonsense mutation in the CUL4B gene. The patient's condition appeared to reflect a reactive, rather than neoplastic, process. Clinicians should be prepared to detect such pseudotumors histopathologically in order to avoid unnecessary differential tests of neoplastic or infectious diseases, as well as potentially harmful therapies.


Asunto(s)
Calcinosis , Oligodendroglioma , Sistema Nervioso Central , Proteínas Cullin , Femenino , Humanos , Imagen por Resonancia Magnética , Persona de Mediana Edad
7.
J Clin Gastroenterol ; 53(9): 660-672, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-29210899

RESUMEN

GOALS: The goal of this study was to observe the bacterial colonization in the intestinal mucosa in the patients with diarrhea predominant irritable bowel syndrome (IBS-D) and ulcerative colitis (UC), and compare the mucosa-associated microbiota among the IBS-D patients, UC patients and the healthy control, and explore the correlation of the mucosa-associated microbiota with clinical manifestations. STUDY: A total of 20 IBS-D patients, 28 patients with UC (16 active, 12 inactive) and 16 healthy subjects were enrolled in the study. They all underwent colonoscopies in the Gastrointestinal Endoscopy Center in the Second Affiliated Hospital of Xi'an Jiaotong University from June 2016 to October 2016. The mucosa specimens were taken at the junction of rectum and sigmoid colon for fluorescent in situ hybridization (FISH). Then the observed mucosa-associated microbiota was counted and compared. RESULTS: (1) In the IBS-D patients, the mucosa-associated bacteria were found to colonize in the surface of mucosa and the adjacent mucin layer. And in active UC, Escherichia coli, and Bacteroides were found in the lamina propria, in addition to bacterial colonization in the above-mentioned areas. (2) The total count of mucosa-associated bacteria and the individual counts of E. coli, Clostridium, and Bacteroides were significantly increased, and Bifidobacteria significantly decreased (P<0.05) in the IBS-D patients and UC patients. Counts of Lactobacillus were decreased only in UC patients compared with the healthy control. And a significantly larger variation of the above-mentioned bacterial counts was found in the patients with UC, particularly in those with active UC, compared with those with IBS-D (P<0.05); the counts in the UC group were 1.3 to 5.3 times more or less than those in the IBS-D group. (3) Compared with healthy controls and IBS-D, the total count of bacteria and the individual counts of E. coli and Bacteroides in the lamina propria in active UC were significantly increased (P<0.05). (4) A significant negative correlation of the counts of Lactobacillus and Bifidobacteria with the defecation frequency and fecal characteristics (P<0.05) was found in the IBS-D patients; in those with UC, both the total count of bacteria and the individual counts of E. coli, Clostridium, Bacteroides, Lactobacillus, and Bifidobacteria were significantly correlated, positively or negatively, with the related clinical manifestations and the activity of the disease (P<0.05). CONCLUSIONS: Compared with the healthy control, intestinal microecology was changed most obviously in UC with much smaller differences though in the same direction in IBS-D. The translocation of some bacteria into the lamina propria was found in UC, particularly in active UC. The changes of mucosa-associated microbiota were related more or less to some clinical manifestations in IBS-D and UC.


Asunto(s)
Bacterias/aislamiento & purificación , Colitis Ulcerosa/microbiología , Microbioma Gastrointestinal/fisiología , Síndrome del Colon Irritable/microbiología , Adulto , Estudios de Casos y Controles , Colonoscopía , Diarrea/microbiología , Femenino , Humanos , Hibridación Fluorescente in Situ , Mucosa Intestinal/microbiología , Masculino , Persona de Mediana Edad
8.
Lipids Health Dis ; 18(1): 211, 2019 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-31805951

RESUMEN

BACKGROUND: Insulin resistance (IR) and lipid peroxidation are accepted as 'two-hit' hypothesis of Non-alcoholic fatty liver disease (NAFLD). However, there are few published research on identifying genes which connect lipid and glucose metabolism by gene microarray. OBJECTIVE: To identify target genes related to lipid and glucose metabolism that might be responsible for the pathogenesis of NAFLD. METHODS: A rat model of NAFLD was established by feeding male rats with high-fat diet and gene expression profiles of liver tissues were determined using Agilent DNA microarray. We then investigated differentially expressed genes (DEGs) and intersection of them by using Gene Ontology (GO) and Pathway Analyses. Target genes were verified by Real-time polymerase chain reaction (RT-PCR). RESULTS: Compared with control, 932 genes, including 783 up-regulated and 149 down-regulated, exhibited differences in expression. The up-regulated genes were involved in biosynthesis, cell development, cell differentiation and down-regulated genes contributed to biological metabolic process, adipokine metabolic pathway and insulin signaling pathway. We identified genes involved in insulin signaling pathway, Notch signaling pathway and lipid synthetic process to be closely related to liver fat accumulation and insulin resistance. Among them, IGFBP7, Notch1 and HMGCR were up-regulated (2.85-fold, 3.22-fold, and 2.06-fold, respectively, all P < 0.05) and ACACB was down-regulated (2.08-fold, P < 0.01). These four genes supposed to connect lipid and glucose metabolism after GO and Pathway analyses. CONCLUSIONS: These findings provide innovative information on the whole genome expression profile due to high-fat diet feeding, and bring new insight into the regulating effects of genes on the lipid and glucose metabolism of NAFLD.


Asunto(s)
Acetil-CoA Carboxilasa/genética , Glucosa/metabolismo , Hidroximetilglutaril-CoA Reductasas/genética , Proteínas de Unión a Factor de Crecimiento Similar a la Insulina/genética , Hígado/metabolismo , Enfermedad del Hígado Graso no Alcohólico/genética , Receptor Notch1/genética , Acetil-CoA Carboxilasa/metabolismo , Animales , Metabolismo de los Hidratos de Carbono/genética , Dieta Alta en Grasa/efectos adversos , Modelos Animales de Enfermedad , Perfilación de la Expresión Génica , Regulación de la Expresión Génica , Ontología de Genes , Hidroximetilglutaril-CoA Reductasas/metabolismo , Resistencia a la Insulina , Proteínas de Unión a Factor de Crecimiento Similar a la Insulina/metabolismo , Metabolismo de los Lípidos/genética , Hígado/patología , Masculino , Análisis por Micromatrices , Anotación de Secuencia Molecular , Enfermedad del Hígado Graso no Alcohólico/etiología , Enfermedad del Hígado Graso no Alcohólico/metabolismo , Enfermedad del Hígado Graso no Alcohólico/patología , Ratas , Ratas Sprague-Dawley , Receptor Notch1/metabolismo , Transducción de Señal
9.
J Exp Bot ; 69(12): 2953-2965, 2018 05 25.
Artículo en Inglés | MEDLINE | ID: mdl-29659946

RESUMEN

In plants, unisexual flowers derived from developmental sex determination form separate stamens and pistils that facilitate cross pollination. In cucumber and melon, ethylene plays a key role in sex determination. Six sex determination-related genes have been identified in ethylene biosynthesis in these Cucumis species. The interactions among these genes are thought to involve ethylene signaling; however, the underlying mechanism of regulation remains unknown. In this study, hormone treatment and qPCR assays were used to confirm expression of these sex determination-related genes in cucumber and melon is ethylene sensitive. RNA-Seq analysis subsequently helped identify the ethylene responsive factor (ERF) gene, CsERF110, related to ethylene signaling and sex determination. CsERF110 and its melon ortholog, CmERF110, shared a conserved AP2/ERF domain and showed ethylene-sensitive expression. Yeast one-hybrid and ChIP-PCR assays further indicated that CsERF110 bound to at least two sites in the promoter fragment of CsACS11, while transient transformation analysis showed that CsERF110 and CmERF110 enhance CsACS11 and CmACS11 promoter activity, respectively. Taken together, these findings suggest that CsERF110 and CmERF110 respond to ethylene signaling, mediating ethylene-regulated transcription of CsACS11 and CmACS11 in cucumber and melon, respectively. Furthermore, the mechanism involved in its regulation is thought to be conserved in these two Cucumis species.


Asunto(s)
Cucumis melo/genética , Cucumis sativus/genética , Etilenos/metabolismo , Liasas/genética , Proteínas de Plantas/genética , Factores de Transcripción/genética , Secuencia de Aminoácidos , Cucumis melo/metabolismo , Cucumis sativus/metabolismo , Flores/genética , Flores/crecimiento & desarrollo , Regulación de la Expresión Génica de las Plantas , Liasas/metabolismo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Alineación de Secuencia , Factores de Transcripción/metabolismo , Transcripción Genética
10.
Theor Appl Genet ; 131(12): 2663-2675, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30244395

RESUMEN

KEY MESSAGE: Candidate genes associated with in vitro regeneration were identified in cucumber. The ability to regenerate shoots or whole plants from differentiated plant tissues is essential for plant transformation. In cucumber (Cucumis sativus L.), regeneration ability varies considerably across accessions, but the genetic mechanism has not yet been demonstrated. In the present study, 148 recombinant inbred lines and a core collection were examined to identify candidate genes involved in cucumber regeneration. Four QTL for cotyledon regeneration that explained 9.7-16.6% of the phenotypic variation in regeneration were identified on cucumber chromosomes 1, 3, and 6. The loci Fcrms1.1 and Fcrms+1.1 were consistently detected in the same genetic interval on two regeneration media. A genome-wide association study revealed 18 SNPs (- log(p) > 5) significantly associated with cotyledon regeneration. Three candidate genes in this region were identified. RT-PCR analyses revealed that Csa1G642540 was significantly more highly expressed in genotypes with high cotyledon regeneration rates than in those with low regeneration. The Csa1G642540 CDS driven by its native promoter was transformed into cucumber line 9110Gt; molecular analyses showed that the T-DNA had integrated into the genomes of 8.6% of regenerated plantlets. The seeds from T0 plants expressing Csa1G642540 were tested for regeneration from cotyledon explants, and the segregate ratio in regeneration frequency is 3:1. The AT3G44110.1, the homologue gene of Csa1G642540 in Arabidopsis, has been reported as PM H+-ATPase activity regulation, integrating flowering signals and enlarging meristem function. These results demonstrate that Csa1G642540 might play an important role in regeneration in cucumber and could serve as a selectable marker for regeneration from cotyledons.


Asunto(s)
Cucumis sativus/crecimiento & desarrollo , Cucumis sativus/genética , Genes de Plantas , Regeneración/genética , Cotiledón/crecimiento & desarrollo , Estudios de Asociación Genética , Genotipo , Desequilibrio de Ligamiento , Fenotipo , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo
11.
Brain Inj ; 32(11): 1405-1412, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29985665

RESUMEN

OBJECTIVE: Delayed neurological deficit was often observed in patients underwent craniectomy, which could be improved by cranioplasty. Little is known about hemodynamic improvement before and after cranioplasty. METHODS: Cerebral blood perfusion, tympanic membrane temperature (TMT), neuropsychological and cognitive function were assessed in eleven craniectomy patients before and after cranioplasty. RESULTS: Before cranioplasty, the cerebral blood volume (CBV) on the decompressed side was significantly lower than that of the contralateral side. The cranioplasty led to instant improvement (7 days after cranioplasty) of cerebral perfusion at the cranioplasty side in the frontal lobe, parietal lobe, temporal lobe, mesencephalon, basal ganglia and thalamus, but not the occipital lobe and epencephalon. Interestingly, CBV of the thalamus and basal ganglia gradually decreased to pre-surgical status 6 months later while the frontal lobe, parietal lobe, temporal lobe, mesencephalon remained well perfused. Meanwhile, the TMT changes acquired positive correlation with the perfusion of temporal lobe and mesencephalon as well as the GCS and MMSE score. CONCLUSION: The cranioplasty remarkably improves neurological and cognitive function by ameliorating cerebral perfusion in certain regions. The TMT could be used as a non-invasive method to monitor the cerebral perfusion improvement after the cranioplasty.


Asunto(s)
Temperatura Corporal/fisiología , Circulación Cerebrovascular/fisiología , Craniectomía Descompresiva/métodos , Membrana Timpánica/cirugía , Lesiones Encefálicas/cirugía , Femenino , Estudios de Seguimiento , Lateralidad Funcional , Escala de Consecuencias de Glasgow , Humanos , Masculino , Pruebas Neuropsicológicas , Resultado del Tratamiento , Membrana Timpánica/fisiología
12.
Theor Appl Genet ; 130(8): 1693-1703, 2017 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-28516384

RESUMEN

KEY MESSAGE: A novel dwarf cucumber mutant, scp-2, displays a typical BR biosynthesis-deficient phenotype, which is due to a mutation in CsDET2 for a steroid 5-alpha-reductase. Brassinosteroids (BRs) are a group of plant hormones that play important roles in the development of plant architecture, and extreme dwarfism is a typical outcome of BR-deficiency. Most cucumber (Cucumis sativus L.) varieties have an indeterminate growth habit, and dwarfism may have its value in manipulation of plant architecture and improve production in certain production systems. In this study, we identified a spontaneous dwarf mutant, super compact-2 (scp-2), that also has dark green, wrinkle leaves. Genetic analyses indicated that scp-2 was different from two previously reported dwarf mutants: compact (cp) and super compact-1 (scp-1). Map-based cloning revealed that the mutant phenotype was due to two single nucleotide polymorphism and a single-base insertion in the CsDET2 gene that resulted in a missense mutation in a conserved amino acid and thus a truncated protein lacking the conserved catalytic domains in the predicted steroid 5α-reductase protein. Measurement of endogenous hormone levels indicated a reduced level of brassinolide (BL, a bioactive BR) in scp-2, and the mutant phenotype could be partially rescued by the application of epibrassinolide (EBR). In addition, scp-2 mutant seedlings exhibited dark-grown de-etiolation, and defects in cell elongation and vascular development. These data support that scp-2 is a BR biosynthesis-deficient mutant, and that the CsDET2 gene plays a key role in BR biosynthesis in cucumber. We also described the systemic BR responses and discussed the specific BR-related phenotypes in cucumber plants.


Asunto(s)
3-Oxo-5-alfa-Esteroide 4-Deshidrogenasa/genética , Cucumis sativus/genética , Proteínas de Plantas/genética , Secuencia de Aminoácidos , Brasinoesteroides/farmacología , Mapeo Cromosómico , Cucumis sativus/enzimología , Cucumis sativus/crecimiento & desarrollo , Genes de Plantas , Fenotipo , Esteroides Heterocíclicos/farmacología
13.
J Integr Plant Biol ; 59(10): 736-741, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28598543

RESUMEN

Plant species exhibit substantial variation in leaf morphology. We isolated a recessive mutant gene termed small and cordate leaf 1 (scl1) that causes alteration in both leaf size and shape of cucumber. Compared to wild type leaves, the scl1 mutant had fewer numbers of epidermal pavement cells. A single nucleotide polymorphism was associated with this leaf phenotype, which occurred in a putative nucleoside bisphosphate phosphatase. RNA-seq analysis of the wild type and scl1 mutant leaves suggested that SCL1 regulation may not involve known hormonal pathways. Our work identified a candidate gene for SCL1 that may play a role in leaf development.


Asunto(s)
Cucumis sativus/genética , Genes de Plantas , Mutación/genética , Hojas de la Planta/anatomía & histología , Hojas de la Planta/genética , Proteínas de Plantas/genética , Estudios de Asociación Genética , Proteínas de Plantas/metabolismo , Análisis de Secuencia de ARN
14.
J Integr Plant Biol ; 58(9): 766-71, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26936301

RESUMEN

We isolated a mutant showing perturbations in the development of male and female floral organs and fruits. Analysis of the single nucleotide polymorphisms from bulked F2 pools identified the causative variant occurring in Csa4G126690. Csa4G126690 shows high homology to Arabidopsis SEPALLATA2 (SEP2) thus being designated CsSEP2. The causative variant was located on the splicing site of CsSEP2, resulting in the skipping of exon 6 and abolishment of the transcriptional activity. Our data suggest that CsSEP2 is involved in the floral organ and fruits development by conferring transcriptional activity.


Asunto(s)
Cucumis sativus/crecimiento & desarrollo , Cucumis sativus/genética , Exones/genética , Flores/crecimiento & desarrollo , Frutas/crecimiento & desarrollo , Genes de Plantas , Proteínas de Plantas/genética , Secuencia de Bases , Flores/genética , Frutas/genética , Mutación/genética , Fenotipo , Proteínas de Plantas/metabolismo , Polimorfismo de Nucleótido Simple/genética
15.
J Chem Phys ; 142(22): 224307, 2015 Jun 14.
Artículo en Inglés | MEDLINE | ID: mdl-26071710

RESUMEN

In this paper, we report a four-dimensional potential energy surface (PES) of the Ar-D2O complex. The ab initio calculations are carried out by the coupled-cluster singles and doubles level with noniterative inclusion of connected triples [CCSD(T)] method with a large basis set supplemented with bond functions. The PES includes explicit dependence on the ν2 bending normal coordinate of Q2 the D2O molecule. Two vibrationally averaged PESs with D2O molecule in its ground and first ν2 excited vibrational states are generated by integrating over the Q2 normal coordinate. Based on these two PESs, the bound state energies are determined and used in the infrared spectra prediction. The theoretical frequencies for 104 infrared transitions of Π1(11)(ν2 = 1)←Σ0(00), Σ1(11)(ν2 = 1)←Σ0(00), Π1(10)(ν2 = 1)←Σ0(01), and Π1(01)(ν2 = 1)←Σ1(01) of Ar-D2O complex are in good agreement with the available experimental values.

16.
J Integr Plant Biol ; 57(11): 936-42, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25819550

RESUMEN

The peel color of fruit is an important commercial trait in cucumber, but the underlying molecular basis is largely unknown. A mutant showing light green exocarp was discovered from ethyl methane sulfonate (EMS) mutagenized cucumber line 406 with dark green exocarp. Genetic analysis showed the mutant phenotype is conferred by a single recessive gene, here designated as lgp (light green peel). By re-sequencing of bulked segregants, we identified the candidate gene Csa7G051430 encoding ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5 (ARC5) that plays a vital role in chloroplast division in Arabidopsis. A single nucleotide polymorphism (SNP) causing amino acid alteration in the conserved GTPase domain of Csa7G051430 showed co-segregation with the altered phenotype. Furthermore, the transient RNA interference of this gene resulted in reduced number and enlarged size of chloroplasts, which were also observed in the lgp mutant. This evidence supports that the non-synonymous SNP in Csa7G051430 is the causative mutation for the light green peel. This study provides a new allele for cucumber breeding for light green fruits and additional resource for the study of chloroplast development.


Asunto(s)
Cloroplastos/genética , Cucumis sativus/genética , Pigmentación/genética , Secuencia de Aminoácidos , Datos de Secuencia Molecular , Interferencia de ARN
17.
Theor Appl Genet ; 127(7): 1491-9, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-24845123

RESUMEN

KEY MESSAGE: Next-generation sequencing enabled a fast discovery of a major QTL controlling early flowering in cucumber, corresponding to the FT gene conditioning flowering time in Arabidopsis. Next-generation sequencing technologies are making it faster and more efficient to establish the association of agronomic traits with molecular markers or candidate genes, which is the requirement for marker-assisted selection in molecular breeding. Early flowering is an important agronomic trait in cucumber (Cucumis sativus L.), but the underlying genetic mechanism is unknown. In this study, we identified a candidate gene for early flowering QTL, Ef1.1 through QTL-seq. Segregation analysis in F2 and BC1 populations derived from a cross between two inbred lines "Muromskij" (early flowering) and "9930" (late flowering) suggested quantitative nature of flowering time in cucumber. Genome-wide comparison of SNP profiles between the early and late-flowering bulks constructed from F2 plants identified a major QTL, designated Ef1.1 on cucumber chromosome 1 for early flowering in Muromskij, which was confirmed by microsatellite marker-based classical QTL mapping in the F2 population. Joint QTL-seq and traditional QTL analysis delimited Ef1.1 to an 890 kb genomic region. A cucumber gene, Csa1G651710, was identified in this region, which is a homolog of the FLOWERING LOCUS T (FT), the main flowering switch gene in Arabidopsis. Quantitative RT-PCR study of the expression level of Csa1G651710 revealed significantly higher expression in early flowering genotypes. Data presented here provide support for Csa1G651710 as a possible candidate gene for early flowering in the cucumber line Muromskij.


Asunto(s)
Cucumis sativus/genética , Flores/crecimiento & desarrollo , Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Sitios de Carácter Cuantitativo , Secuencia de Aminoácidos , Mapeo Cromosómico , Cromosomas de las Plantas/genética , Flores/genética , Marcadores Genéticos , Genotipo , Repeticiones de Microsatélite , Datos de Secuencia Molecular , Fenotipo , Polimorfismo de Nucleótido Simple
18.
Clin Transl Gastroenterol ; 15(6): e1, 2024 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-38713137

RESUMEN

INTRODUCTION: Constipation is an independent risk factor for poor bowel preparation. This study aimed to evaluate the bowel cleansing efficacy and safety of polyethylene glycol (PEG) combined with linaclotide (lin) for colonoscopy in patients with chronic constipation (CC). METHODS: This single-blinded, randomized, controlled, and multicenter study was conducted from July 2021 to December 2022 at 7 hospitals. Patients with CC who underwent colonoscopies were enrolled and randomly assigned to 4 groups with split-PEG regimens: 4L-PEG group, 4L-PEG+1d-Lin group, 3L-PEG+1d-Lin group, and 3L-PEG+3d-Lin group. The primary outcome was rates of adequate bowel preparation, defined as a total BBPS score ≥6 and a score ≥2 for each segment. Secondary outcomes were adverse effects, sleep quality, willingness to repeat the colonoscopy, adenoma detection rate, and polyp detection rate. RESULTS: Five hundred two patients were enrolled. The rates of adequate bowel preparation (80.0% vs 60.3%, P < 0.001; 84.4% vs 60.3%, P < 0.001) and the total Boston Bowel Preparation Scale (BBPS) scores (6.90 ± 1.28 vs 6.00 ± 1.61, P < 0.001; 7.03 ± 1.24 vs 6.00 ± 1.61, P < 0.01) in the 4L-PEG+1d-Lin group and the 3L-PEG+3d-Lin group were superior to that in the 4L-PEG group. Compared with the 4L-PEG group, the 4L-PEG+1d-Lin group (66.7% vs 81.7%, P = 0.008) and the 3L-PEG+3d-Lin group (75.0% vs 81.7%, P = 0.224) had a lower percentage of mild adverse events. No statistically significant difference in willingness to repeat the colonoscopy, sleep quality, polyp detection rate, or adenoma detection rate was observed among groups. DISCUSSION: PEG combined with linaclotide might be an effective method for bowel preparation before colonoscopy in patients with CC.


Asunto(s)
Catárticos , Colonoscopía , Estreñimiento , Polietilenglicoles , Humanos , Polietilenglicoles/administración & dosificación , Polietilenglicoles/efectos adversos , Masculino , Femenino , Estreñimiento/diagnóstico , Persona de Mediana Edad , Método Simple Ciego , Catárticos/administración & dosificación , Catárticos/efectos adversos , Enfermedad Crónica , Anciano , Adulto , Péptidos/administración & dosificación , Péptidos/efectos adversos , Polvos , Resultado del Tratamiento , Electrólitos/administración & dosificación , Electrólitos/efectos adversos
19.
PLoS One ; 18(2): e0276906, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36791127

RESUMEN

The efficacy of government interventions in epidemic has become a hot subject since the onset of COVID-19. There is however much variation in the results quantifying the effects of interventions, which is partly related to the varying modelling approaches employed by existing studies. Among the many factors affecting the modelling results, people's voluntary behavior change is less examined yet likely to be widespread. This paper therefore aims to analyze how the choice of modelling approach, in particular how voluntary behavior change is accounted for, would affect the intervention effect estimation. We conduct the analysis by experimenting different modelling methods on a same data set composed of the 500 most infected U.S. counties. We compare the most frequently used methods from the two classes of modelling approaches, which are Bayesian hierarchical model from the class of computational approach and difference-in-difference from the class of natural experimental approach. We find that computational methods that do not account for voluntary behavior changes are likely to produce larger estimates of intervention effects as assumed. In contrast, natural experimental methods are more likely to extract the true effect of interventions by ruling out simultaneous behavior change. Among different difference-in-difference estimators, the two-way fixed effect estimator seems to be an efficient one. Our work can inform the methodological choice of future research on this topic, as well as more robust re-interpretation of existing works, to facilitate both future epidemic response plans and the science of public health.


Asunto(s)
COVID-19 , Epidemias , Humanos , COVID-19/epidemiología , COVID-19/prevención & control , Teorema de Bayes , Predicción , Gobierno
20.
J Hazard Mater ; 452: 131306, 2023 06 15.
Artículo en Inglés | MEDLINE | ID: mdl-37004443

RESUMEN

The extensive abuse and inadvertent discharge of various antibiotics into the environment has become a serious problem for posing a big threat to human health. In order to deal with this problem, we utilized cold atmospheric plasma jet (CAPJ) to treat two different antibiotics, namely, norfloxacin and chloramphenicol, and investigated the efficiencies and corresponding mechanisms for removing the mixed antibiotics. In the application of the CAPJ technique, we made use of not only the direct plasma processing, but also the indirect plasma-activated water (PAW) treatment. The efficiency for mixed antibiotics treatment was considerably enhanced as compared to the efficiency for treatment of single antibiotics. The contributions from the CAPJ-induced reactive oxygen/nitrogen species (RONS) were examined, showing that ·OH and 1O2 played a major role in the degradation of norfloxacin and chloramphenicol in the direct plasma treatment, while 1O2 played a major role in the PAW treatment. The bio-toxicity evaluation was also provided to verify the ecological safety of the CAPJ treatment. As such, this work has not only showed the effectiveness of CAPJ treatment of mixed antibiotics, but also elucidated the mechanisms for the enhanced treatment efficiency, which may provide a new solution for treatment of antibiotics in the environment.


Asunto(s)
Norfloxacino , Gases em Plasma , Humanos , Norfloxacino/toxicidad , Cloranfenicol/toxicidad , Gases em Plasma/farmacología , Agua , Antibacterianos/toxicidad , Especies Reactivas de Oxígeno/metabolismo , Especies de Nitrógeno Reactivo/metabolismo
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