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1.
Mol Plant Microbe Interact ; 34(10): 1128-1142, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34260261

RESUMEN

The fungal family Serendipitaceae encompasses root-associated lineages with endophytic, ericoid, orchid, and ectomycorrhizal lifestyles. Switchgrass is an important bioenergy crop for cellulosic ethanol production owing to high biomass production on marginal soils otherwise unfit for food crop cultivation. The aim of this study was to investigate the host plant responses to Serendipita spp. colonization by characterizing the switchgrass root transcriptome during different stages of symbiosis in vitro. For this, we included a native switchgrass strain, Serendipita bescii, and a related strain, S. vermifera, isolated from Australian orchids. Serendipita colonization progresses from thin hyphae that grow between root cells to, finally, the production of large, bulbous hyphae that fill root cells during the later stages of colonization. We report that switchgrass seems to perceive both fungi prior to physical contact, leading to the activation of chemical and structural defense responses and putative host disease resistance genes. Subsequently, the host defense system appears to be quenched and carbohydrate metabolism adjusted, potentially to accommodate the fungal symbiont. In addition, prior to contact, switchgrass exhibited significant increases in root hair density and root surface area. Furthermore, genes involved in phytohormone metabolism such as gibberellin, jasmonic acid, and salicylic acid were activated during different stages of colonization. Both fungal strains induced plant gene expression in a similar manner, indicating a conserved plant response to members of this fungal order. Understanding plant responsiveness to Serendipita spp. will inform our efforts to integrate them into forages and row crops for optimal plant-microbe functioning, thus facilitating low-input, sustainable agricultural practices.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Asunto(s)
Basidiomycota , Micorrizas , Panicum , Australia , Basidiomycota/genética , Hongos , Micorrizas/genética , Panicum/genética , Raíces de Plantas/genética , Simbiosis , Transcriptoma/genética
2.
Plant Cell Environ ; 44(1): 186-202, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-32822068

RESUMEN

Knowing how switchgrass (Panicum virgatum L.) responds and adapts to phosphorus (P)-limitation will aid efforts to optimize P acquisition and use in this species for sustainable biomass production. This integrative study investigated the impacts of mild, moderate, and severe P-stress on genome transcription and whole-plant metabolism, physiology and development in switchgrass. P-limitation reduced overall plant growth, increased root/shoot ratio, increased root branching at moderate P-stress, and decreased root diameter with increased density and length of root hairs at severe P-stress. RNA-seq analysis revealed thousands of genes that were differentially expressed under moderate and severe P-stress in roots and/or shoots compared to P-replete plants, with many stress-induced genes involved in transcriptional and other forms of regulation, primary and secondary metabolism, transport, and other processes involved in P-acquisition and homeostasis. Amongst the latter were multiple miRNA399 genes and putative targets of these. Metabolite profiling showed that levels of most sugars and sugar alcohols decreased with increasing P stress, while organic and amino acids increased under mild and moderate P-stress in shoots and roots, although this trend reversed under severe P-stress, especially in shoots.


Asunto(s)
Panicum/metabolismo , Fósforo/deficiencia , Perfilación de la Expresión Génica , Registros Médicos , MicroARNs/metabolismo , Panicum/crecimiento & desarrollo , Panicum/fisiología , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/metabolismo , Brotes de la Planta/crecimiento & desarrollo , Brotes de la Planta/metabolismo , ARN Largo no Codificante/metabolismo , ARN de Planta/metabolismo , Estrés Fisiológico
3.
Int J Mol Sci ; 22(13)2021 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-34281196

RESUMEN

Until recently, genes from the iron-sulfur (Fe-S) cluster pathway were not known to have a role in plant disease resistance. The Nitrogen Fixation S (NIFS)-like 1 (NFS1) and Mitochondrial Ferredoxin-1 (MFDX1) genes are part of a set of 27 Fe-S cluster genes induced after infection with host and nonhost pathogens in Arabidopsis. A role for AtNFS1 in plant immunity was recently demonstrated. In this work, we showed that MFDX1 is also involved in plant defense. More specifically, Arabidopsis mfdx1 mutants were compromised for nonhost resistance against Pseudomonas syringae pv. tabaci, and showed increased susceptibility to the host pathogen P. syringae pv. tomato DC3000. Arabidopsis AtMFDX1 overexpression lines were less susceptible to P. syringae pv. tomato DC3000. Metabolic profiling revealed a reduction of several defense-related primary and secondary metabolites, such as asparagine and glucosinolates in the Arabidopsis mfdx1-1 mutant when compared to Col-0. A reduction of 5-oxoproline and ornithine metabolites that are involved in proline synthesis in mitochondria and affect abiotic stresses was also observed in the mfdx1-1 mutant. In contrast, an accumulation of defense-related metabolites such as glucosinolates was observed in the Arabidopsis NFS1 overexpressor when compared to wild-type Col-0. Additionally, mfdx1-1 plants displayed shorter primary root length and reduced number of lateral roots compared to the Col-0. Taken together, these results provide additional evidence for a new role of Fe-S cluster pathway in plant defense responses.


Asunto(s)
Proteínas de Arabidopsis/genética , Arabidopsis/genética , Ferredoxinas/genética , Arabidopsis/inmunología , Proteínas de Arabidopsis/inmunología , Resistencia a la Enfermedad , Ferredoxinas/inmunología , Ferredoxinas/metabolismo , Glucosinolatos/genética , Glucosinolatos/inmunología , Hierro/metabolismo , Proteínas Hierro-Azufre/genética , Proteínas Hierro-Azufre/metabolismo , Mitocondrias/metabolismo , Familia de Multigenes , Enfermedades de las Plantas/genética , Enfermedades de las Plantas/inmunología , Inmunidad de la Planta/genética , Estrés Fisiológico/genética , Azufre/metabolismo
4.
Metabolomics ; 15(6): 85, 2019 05 29.
Artículo en Inglés | MEDLINE | ID: mdl-31144047

RESUMEN

INTRODUCTION: Triterpene saponins are important bioactive plant natural products found in many plant families including the Leguminosae. OBJECTIVES: We characterize two Medicago truncatula cytochrome P450 enzymes, MtCYP72A67 and MtCYP72A68, involved in saponin biosynthesis including both in vitro and in planta evidence. METHODS: UHPLC-(-)ESI-QToF-MS was used to profile saponin accumulation across a collection of 106 M. truncatula ecotypes. The profiling results identified numerous ecotypes with high and low saponin accumulation in root and aerial tissues. Four ecotypes with significant differential saponin content in the root and/or aerial tissues were selected, and correlated gene expression profiling was performed. RESULTS: Correlation analyses between gene expression and saponin accumulation revealed high correlations between saponin content with gene expression of ß-amyrin synthase, MtCYP716A12, and two cytochromes P450 genes, MtCYP72A67 and MtCYP72A68. In vivo and in vitro biochemical assays using yeast microsomes containing MtCYP72A67 revealed hydroxylase activity for carbon 2 of oleanolic acid and hederagenin. This finding was supported by functional characterization of MtCYP72A67 using RNAi-mediated gene silencing in M. truncatula hairy roots, which revealed a significant reduction of 2ß-hydroxylated sapogenins. In vivo and in vitro assays with MtCYP72A68 produced in yeast showed multifunctional oxidase activity for carbon 23 of oleanolic acid and hederagenin. These findings were supported by overexpression of MtCYP72A68 in M. truncatula hairy roots, which revealed significant increases of oleanolic acid, 2ß-hydroxyoleanolic acid, hederagenin and total saponin levels. CONCLUSIONS: The cumulative data support that MtCYP72A68 is a multisubstrate, multifunctional oxidase and MtCYP72A67 is a 2ß-hydroxylase, both of which function during the early steps of triterpene-oleanate sapogenin biosynthesis.


Asunto(s)
Sistema Enzimático del Citocromo P-450/metabolismo , Medicago truncatula/metabolismo , Proteínas de Plantas/metabolismo , Sapogeninas/metabolismo , Vías Biosintéticas , Cromatografía Líquida de Alta Presión/métodos , Sistema Enzimático del Citocromo P-450/genética , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Medicago truncatula/genética , Metabolómica/métodos , Proteínas de Plantas/genética , Espectrometría de Masa por Ionización de Electrospray/métodos
5.
Health Educ Res ; 33(1): 14-25, 2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29112721

RESUMEN

Recommendations for the prevention of childhood obesity encourage providers to counsel parents and their children on healthy diet and activity behaviors. This study evaluated the feasibility of a theory-based, tailored communication intervention for obesity prevention (Team Up for Health) delivered during a well-child visit. A two-armed randomized controlled trial was used. Parents of children aged 4-10 years were recruited from a list of patients due for a well-child visit at a pediatric primary care clinic. Parents were randomized to either the 'immediate' condition (parent and pediatrician received the tailored report at the well-child visit) or the 'delayed' condition (parent received the report at the end of the study). Self-report measures assessed physical activity, fruits, vegetables, television time, sugary drinks, and 100% fruit juice. Parents completed assessments at baseline, <48 h and 4-week follow-up. Providers were interviewed at the end of the study. Independent t-tests were used to examine between group differences. Seven areas of feasibility were evaluated: Recruitment, randomization, measurement, retention, acceptability, implementation and demand. Results showed high rates of measurement (85%) and acceptability (89%) and implementation (80%) of the intervention. In conclusion, Team Up for Health was feasible; however, a larger study is needed to evaluate its efficacy.


Asunto(s)
Dieta Saludable , Educación en Salud/organización & administración , Padres/educación , Obesidad Infantil/prevención & control , Atención Primaria de Salud/organización & administración , Niño , Preescolar , Comunicación , Ejercicio Físico , Estudios de Factibilidad , Femenino , Humanos , Masculino , Tiempo de Pantalla , Factores Socioeconómicos , Televisión
6.
J Chem Ecol ; 43(7): 712-724, 2017 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-28744732

RESUMEN

Plant resistance mechanisms to insect herbivory can potentially be bred into crops as an important strategy for integrated pest management. Medicago truncatula ecotypes inoculated with the rhizobium Ensifer medicae (Sinorhizobium medica) WSM419 were screened for resistance to herbivory by caterpillars of the beet armyworm, Spodoptera exigua, through leaf and whole plant choice studies; TN1.11 and F83005.5 are identified as the least and most deterrent ecotypes, respectively. In response to caterpillar herbivory, both ecotypes mount a robust burst of plant defensive jasmonate phytohormones. Restriction of caterpillars to either of these ecotypes does not adversely affect pest performance. This argues for an antixenosis (deterrence) resistance mechanism associated with the F83005.5 ecotype. Unbiased metabolomic profiling identified strong ecotype-specific differences in metabolite profile, particularly in the content of oleanolic-derived saponins that may act as antifeedants. Compared to the more susceptible ecotype, F83005.5 has higher levels of oleanolic-type zanhic acid- and medicagenic acid-derived compounds. Together, these data support saponin-mediated deterrence as a resistance mechanism of the F83005.5 ecotype and implicates these compounds as potential antifeedants that could be used in agricultural sustainable pest management strategies.


Asunto(s)
Herbivoria , Medicago truncatula/fisiología , Reguladores del Crecimiento de las Plantas/metabolismo , Saponinas/metabolismo , Spodoptera/fisiología , Animales , Medicago truncatula/química , Metaboloma , Reguladores del Crecimiento de las Plantas/análisis , Saponinas/análisis
7.
Plant Physiol ; 167(4): 1699-716, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25667316

RESUMEN

Integrated metabolomics and transcriptomics of Medicago truncatula seedling border cells and root tips revealed substantial metabolic differences between these distinct and spatially segregated root regions. Large differential increases in oxylipin-pathway lipoxygenases and auxin-responsive transcript levels in border cells corresponded to differences in phytohormone and volatile levels compared with adjacent root tips. Morphological examinations of border cells revealed the presence of significant starch deposits that serve as critical energy and carbon reserves, as documented through increased ß-amylase transcript levels and associated starch hydrolysis metabolites. A substantial proportion of primary metabolism transcripts were decreased in border cells, while many flavonoid- and triterpenoid-related metabolite and transcript levels were increased dramatically. The cumulative data provide compounding evidence that primary and secondary metabolism are differentially programmed in border cells relative to root tips. Metabolic resources normally destined for growth and development are redirected toward elevated accumulation of specialized metabolites in border cells, resulting in constitutively elevated defense and signaling compounds needed to protect the delicate root cap and signal motile rhizobia required for symbiotic nitrogen fixation. Elevated levels of 7,4'-dihydroxyflavone were further increased in border cells of roots exposed to cotton root rot (Phymatotrichopsis omnivora), and the value of 7,4'-dihydroxyflavone as an antimicrobial compound was demonstrated using in vitro growth inhibition assays. The cumulative and pathway-specific data provide key insights into the metabolic programming of border cells that strongly implicate a more prominent mechanistic role for border cells in plant-microbe signaling, defense, and interactions than envisioned previously.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Medicago truncatula , Metabolómica , Enfermedades de las Plantas/inmunología , Rhizobium/fisiología , Transcriptoma , Ascomicetos/fisiología , Flavonoides/metabolismo , Medicago truncatula/genética , Medicago truncatula/metabolismo , Medicago truncatula/microbiología , Modelos Biológicos , Fijación del Nitrógeno , Enfermedades de las Plantas/microbiología , Reguladores del Crecimiento de las Plantas/metabolismo , Raíces de Plantas/genética , Raíces de Plantas/metabolismo , Raíces de Plantas/microbiología , Nódulos de las Raíces de las Plantas/genética , Nódulos de las Raíces de las Plantas/metabolismo , Nódulos de las Raíces de las Plantas/microbiología , Simbiosis
8.
Plant Physiol ; 161(1): 134-47, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23096159

RESUMEN

Tobacco mosaic virus (TMV) forms dense cytoplasmic bodies containing replication-associated proteins (virus replication complexes [VRCs]) upon infection. To identify host proteins that interact with individual viral components of VRCs or VRCs in toto, we isolated viral replicase- and VRC-enriched fractions from TMV-infected Nicotiana tabacum plants. Two host proteins in enriched fractions, ATP-synthase γ-subunit (AtpC) and Rubisco activase (RCA) were identified by matrix-assisted laser-desorption ionization time-of-flight mass spectrometry or liquid chromatography-tandem mass spectrometry. Through pull-down analysis, RCA bound predominantly to the region between the methyltransferase and helicase domains of the TMV replicase. Tobamovirus, but not Cucumber mosaic virus or Potato virus X, infection of N. tabacum plants resulted in 50% reductions in Rca and AtpC messenger RNA levels. To investigate the role of these host proteins in TMV accumulation and plant defense, we used a Tobacco rattle virus vector to silence these genes in Nicotiana benthamiana plants prior to challenge with TMV expressing green fluorescent protein. TMV-induced fluorescent lesions on Rca- or AtpC-silenced leaves were, respectively, similar or twice the size of those on leaves expressing these genes. Silencing Rca and AtpC did not influence the spread of Tomato bushy stunt virus and Potato virus X. In AtpC- and Rca-silenced leaves TMV accumulation and pathogenicity were greatly enhanced, suggesting a role of both host-encoded proteins in a defense response against TMV. In addition, silencing these host genes altered the phenotype of the TMV infection foci and VRCs, yielding foci with concentric fluorescent rings and dramatically more but smaller VRCs. The concentric rings occurred through renewed virus accumulation internal to the infection front.


Asunto(s)
Proteínas de Cloroplastos/metabolismo , Cloroplastos/metabolismo , Nicotiana/virología , Virus del Mosaico del Tabaco/fisiología , Proteínas de Cloroplastos/genética , Cloroplastos/virología , Silenciador del Gen , Vectores Genéticos/genética , Vectores Genéticos/metabolismo , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Interacciones Huésped-Patógeno , Fenotipo , Enfermedades de las Plantas/virología , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Potexvirus/metabolismo , Potexvirus/patogenicidad , Mapeo de Interacción de Proteínas , Transporte de Proteínas , Proteómica/métodos , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN Polimerasa Dependiente del ARN/genética , ARN Polimerasa Dependiente del ARN/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos , Nicotiana/genética , Nicotiana/metabolismo , Virus del Mosaico del Tabaco/enzimología , Virus del Mosaico del Tabaco/patogenicidad , Tombusvirus/metabolismo , Tombusvirus/patogenicidad , Proteínas Virales/genética , Proteínas Virales/metabolismo , Replicación Viral
9.
J Biol Chem ; 285(40): 30654-65, 2010 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-20682788

RESUMEN

Proteins found in the root exudates are thought to play a role in the interactions between plants and soil organisms. To gain a better understanding of protein secretion by roots, we conducted a systematic proteomic analysis of the root exudates of Arabidopsis thaliana at different plant developmental stages. In total, we identified 111 proteins secreted by roots, the majority of which were exuded constitutively during all stages of development. However, defense-related proteins such as chitinases, glucanases, myrosinases, and others showed enhanced secretion during flowering. Defense-impaired mutants npr1-1 and NahG showed lower levels of secretion of defense proteins at flowering compared with the wild type. The flowering-defective mutants fca-1, stm-4, and co-1 showed almost undetectable levels of defense proteins in their root exudates at similar time points. In contrast, root secretions of defense-enhanced cpr5-2 mutants showed higher levels of defense proteins. The proteomics data were positively correlated with enzymatic activity assays for defense proteins and with in silico gene expression analysis of genes specifically expressed in roots of Arabidopsis. In conclusion, our results show a clear correlation between defense-related proteins secreted by roots and flowering time.


Asunto(s)
Arabidopsis/metabolismo , Flores/metabolismo , Regulación de la Expresión Génica de las Plantas/fisiología , Proteínas de Plantas/metabolismo , Raíces de Plantas/metabolismo , Arabidopsis/genética , Flores/genética , Perfilación de la Expresión Génica , Proteínas de Plantas/genética , Raíces de Plantas/genética , Proteómica
10.
Plant Cell Physiol ; 52(8): 1401-21, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21727181

RESUMEN

Jasmonates are specific signal molecules in plants that are involved in a diverse set of physiological and developmental processes. However, methyl jasmonate (MeJA) has been shown to have a negative effect on root growth and, so far, the biochemical mechanism for this is unknown. Using Catharanthus roseus hairy roots, we were able to observe the effect of MeJA on growth inhibition, cell disorganization and cell death of the root cap. Hairy roots treated with MeJA induced the perturbation of mitochondrial membrane integrity and a diminution in ATP biosynthesis. Furthermore, several proteins were identified that were involved in energy and secondary metabolism; the changes in accumulation of these proteins were observed with 100 µM MeJA. In conclusion, our results suggest that a switch of the metabolic fate of hairy roots in response to MeJA could cause an increase in the accumulation of secondary metabolites. This is likely to have important consequences in the production of specific alkaloids important for the pharmaceutical industry.


Asunto(s)
Acetatos/farmacología , Adenosina Trifosfato/biosíntesis , Catharanthus/efectos de los fármacos , Catharanthus/metabolismo , Ciclopentanos/farmacología , Oxilipinas/farmacología , Proteínas de Plantas/metabolismo , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/metabolismo , Aminoácidos/metabolismo , Metabolismo de los Hidratos de Carbono/efectos de los fármacos , Catharanthus/genética , Catharanthus/crecimiento & desarrollo , Ciclo Celular/efectos de los fármacos , Electroforesis en Gel Bidimensional , Metabolismo Energético/efectos de los fármacos , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Redes y Vías Metabólicas/efectos de los fármacos , Mitocondrias/efectos de los fármacos , Mitocondrias/metabolismo , Cápsula de Raíz de Planta/efectos de los fármacos , Cápsula de Raíz de Planta/metabolismo , Cápsula de Raíz de Planta/ultraestructura , Raíces de Plantas/citología , Raíces de Plantas/ultraestructura , Proteoma/metabolismo , Estallido Respiratorio/efectos de los fármacos
11.
J Proteome Res ; 9(12): 6220-31, 2010 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-20853911

RESUMEN

The temporal proteome response of Medicago truncatula suspension cell cultures to yeast elicitation (which mimics fungal infection) was investigated using two-dimensional polyacrylamide gel electrophoresis (2-DE) and nanoliquid chromatography coupled to tandem mass spectrometry (nano LC-MS/MS). Reproducibility of 2-DE was assessed using the number of the visualized protein spots and spot volume. Average coefficient of variation was determined to be less than 6% for the number of spots and around 50% for spot volume. About 4% of the total visualized proteins, that is, 34 out of 861, were differentially accumulated in the suspension cells 24 h after yeast elicitation, including isoflavononid biosynthetic enzymes and a putative laccase. The induction of the putative laccase was highly correlated with the polymerization of phenolics such as 4-hydroxybenzoic acid, 4-hydroxybenzaldehyde, and ferulic acid into cell walls. In contrast, lignin was only induced at the later stages of the temporal study, indicating that this specific laccase is primarily involved in cell wall modifications and/or fortifications rather than in lignification in response to yeast elicitation.


Asunto(s)
Pared Celular/metabolismo , Isoflavonas/biosíntesis , Medicago truncatula/citología , Proteínas de Plantas/análisis , Proteómica/métodos , Oxidorreductasas de Alcohol/genética , Oxidorreductasas de Alcohol/metabolismo , Secuencia de Aminoácidos , Benzaldehídos/metabolismo , Células Cultivadas , Ácidos Cumáricos/metabolismo , Electroforesis en Gel Bidimensional , Lacasa/metabolismo , Lignina/metabolismo , Medicago truncatula/efectos de los fármacos , Medicago truncatula/metabolismo , Datos de Secuencia Molecular , Parabenos/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Polisacáridos/farmacología , Homología de Secuencia de Aminoácido , Factores de Tiempo , Levaduras/química
12.
BMC Plant Biol ; 9: 1, 2009 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-19123941

RESUMEN

BACKGROUND: White lupin (Lupinus albus L.) roots efficiently take up and accumulate (heavy) metals, adapt to phosphate deficiency by forming cluster roots, and secrete antimicrobial prenylated isoflavones during development. Genomic and proteomic approaches were applied to identify candidate genes and proteins involved in antimicrobial defense and (heavy) metal uptake and translocation. RESULTS: A cDNA library was constructed from roots of white lupin seedlings. Eight thousand clones were randomly sequenced and assembled into 2,455 unigenes, which were annotated based on homologous matches in the NCBInr protein database. A reference map of developing white lupin root proteins was established through 2-D gel electrophoresis and peptide mass fingerprinting. High quality peptide mass spectra were obtained for 170 proteins. Microsomal membrane proteins were separated by 1-D gel electrophoresis and identified by LC-MS/MS. A total of 74 proteins were putatively identified by the peptide mass fingerprinting and the LC-MS/MS methods. Genomic and proteomic analyses identified candidate genes and proteins encoding metal binding and/or transport proteins, transcription factors, ABC transporters and phenylpropanoid biosynthetic enzymes. CONCLUSION: The combined EST and protein datasets will facilitate the understanding of white lupin's response to biotic and abiotic stresses and its utility for phytoremediation. The root ESTs provided 82 perfect simple sequence repeat (SSR) markers with potential utility in breeding white lupin for enhanced agronomic traits.


Asunto(s)
Lupinus/metabolismo , Proteínas de Plantas/metabolismo , Raíces de Plantas/metabolismo , Proteoma/metabolismo , Bases de Datos Genéticas , Bases de Datos de Proteínas , Etiquetas de Secuencia Expresada , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Biblioteca de Genes , Genómica , Lupinus/genética , Repeticiones de Microsatélite , Proteínas de Plantas/genética , Raíces de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Proteómica , ARN de Planta/metabolismo
13.
Front Plant Sci ; 10: 850, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31333696

RESUMEN

A total of 1,622 samples representing 201 Medicago truncatula ecotypes were analyzed using ultrahigh pressure liquid chromatography coupled to mass spectrometry (UHPLC-MS) to ascertain saponin profiles in different M. truncatula ecotypes and to provide data for a genome-wide association study and subsequent line selection for saponin biosynthesis. These ecotypes originated from 14 different Mediterranean countries, i.e., Algeria, Cyprus, France, Greece, Israel, Italy, Jordan, Libya, Morocco, Portugal, Spain, Syria, Tunisia, and Turkey. The results revealed significant differences in the saponin content among the ecotypes. European ecotypes generally contained higher saponin content than African ecotypes (p < 0.0001). This suggests that M. truncatula ecotypes modulate their secondary metabolism to adapt to their environments. Significant differences in saponin accumulation were also observed between the aerial and the root tissues of the same ecotypes (p < 0.0001). While some saponins were found to be present in both the aerial and root tissues, zanhic acid glycosides were found predominantly in the aerial tissues. Bayogenin and hederagenin glycosides were found mostly in roots. The differential spatially resolved accumulation of saponins suggests that saponins in the aerial and root tissues play different roles in plant fitness. Aerial saponins such as zanhic glycosides may act as animal feeding deterrent and root saponins may protect against soil microbes.

14.
Health Informatics J ; 24(3): 293-308, 2018 09.
Artículo en Inglés | MEDLINE | ID: mdl-30068265

RESUMEN

This mixed methods study evaluated student and provider attitudes and expectations about offering students online access to their student health services visit notes (open notes). Six (N=6) health care providers from four public universities in northeastern Massachusetts participated. Qualitative interviews were completed by students (N=14) from one University in fall of 2013 and an online survey was completed at two universities in Spring of 2014. Attitudes and expectations were explored using qualitative data and descriptive statistics were used to analyze survey questions. Students' interviews revealed that they desire control over their health and open notes would give them insight and involvement in their health care. Survey data supported these themes. In contrast, providers worried about how it could impact provider-patient relationships. Open notes has the potential to promote students' understanding and responsibility for their healthcare, which could assist students in their transition from pediatric to adult health care.


Asunto(s)
Comunicación en Salud , Accesibilidad a los Servicios de Salud , Enfermeras Practicantes , Estudiantes , Universidades , Actitud , Femenino , Promoción de la Salud , Humanos , Entrevistas como Asunto , Masculino , Massachusetts , Encuestas y Cuestionarios , Adulto Joven
15.
Methods Mol Biol ; 355: 79-92, 2007.
Artículo en Inglés | MEDLINE | ID: mdl-17093305

RESUMEN

Plant cell walls are highly dynamic and chemically active components of plant cells. Cell walls consist primarily of polysaccharides, with proteins comprising approx 10% of the cell wall mass. These proteins are difficult to isolate with a high degree of purity from the complex carbohydrate matrix. This matrix traps proteins and is a source of contamination for subsequent 2-DE analysis. Mature plant tissues provide a further challenge owing to the formation of secondary walls that contain phenolic compounds. This chapter discusses protein extraction from cell walls and presents a specific method for the isolation of proteins from Medicago sativa stem cell walls. The method includes cell disruption by grinding, copious washes with both aqueous and organic solutions to remove cytosolic proteins and small molecule contaminants, and two different salt extractions that provide a highly enriched cell wall protein fraction from alfalfa stem cell walls. Following treatment with a commercial clean-up kit, the protein extracts yield high-quality and high-resolution 2-DE separations from which proteins can be readily identified by mass spectrometry.


Asunto(s)
Pared Celular/química , Medicago sativa/química , Proteínas de Plantas/aislamiento & purificación , Proteómica/métodos , Fraccionamiento Celular/métodos , Proteínas de Plantas/química , Tallos de la Planta/química
16.
Phytochemistry ; 65(12): 1709-20, 2004 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-15276432

RESUMEN

A method for the sequential extraction and profiling by two-dimensional gel electrophoresis (2-DE) of Medicago sativa (alfalfa) stem cell wall proteins is described. Protein extraction included freezing, grinding in a sodium acetate buffer, separation by filtration of cell walls from cytosolic contents, and extensive washing. Cell wall proteins were then extracted sequentially with a solution containing 200 mM CaCl2 and 50 mM sodium acetate, followed by extraction with 3.0 M LiCl and 50 mM sodium acetate. Cell wall proteins from both the CaCl2 and LiCl fractions were profiled by 2-DE. Approximately 150 protein spots were extracted from these two gels, digested with trypsin, and analyzed using nanoscale HPLC coupled to a hybrid quadrupole time-of-flight (Q-tof) tandem mass spectrometer (LC/MS/MS). More than 100 proteins were identified and used in conjunction with the 2-DE profiles to generate proteomic reference maps for cell walls of this important legume. Identified proteins include classical cell wall proteins as well as proteins traditionally considered as non-secreted. Two unique extracellular proteins were also identified.


Asunto(s)
Medicago sativa/metabolismo , Proteínas de Plantas/análisis , Proteómica/métodos , Pared Celular , Electroforesis en Gel Bidimensional , Espectrometría de Masas , Proteínas de Plantas/aislamiento & purificación , Proteoma/análisis
17.
Front Plant Sci ; 4: 112, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23641248

RESUMEN

Medicago truncatula is a leading model species and substantial molecular, genetic, genomics, proteomics, and metabolomics resources have been developed for this species to facilitate the study of legume biology. Currently, over 60 proteomics studies of M. truncatula have been published. Many of these have focused upon the unique symbiosis formed between legumes and nitrogen fixing rhizobia bacteria, while others have focused on seed development and the specialized proteomes of distinct tissues/organs. These include the characterization of sub-cellular organelle proteomes such as nuclei and mitochondria, as well as proteins distributed in plasma or microsomal membranes from various tissues. The isolation of sub-cellular proteins typically requires a series of steps that are labor-intensive. Thus, efficient protocols for sub-cellular fractionation, purification, and enrichment are necessary for each cellular compartment. In addition, protein extraction, solubilization, separation, and digestion prior to mass spectral identification are important to enhance the detection of low abundance proteins and to increase the overall detectable proportion of the sub-cellular proteome. This review summarizes the sub-cellular proteomics studies in M. truncatula.

18.
Phytochemistry ; 72(10): 1020-7, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21353266

RESUMEN

A legume specific protein database (LegProt) has been created containing sequences from seven legume species, i.e., Glycine max, Lotus japonicus, Medicago sativa, Medicago truncatula, Lupinusalbus, Phaseolus vulgaris, and Pisum sativum. The database consists of amino acid sequences translated from predicted gene models and 6-frame translations of tentative consensus (TC) sequences assembled from expressed sequence tags (ESTs) and singleton ESTs. This database was queried using mass spectral data for protein identification and identification success rates were compared to the NCBI nr database. Specifically, Mascot MS/MS ion searches of tandem nano-LC Q-TOFMS/MS mass spectral data showed that relative to the NCBI nr protein database, the LegProt database yielded a 54% increase in the average protein score (i.e., from NCBI nr 480 to LegProt 739) and a 50% increase in the average number of matched peptides (i.e., from NCBI nr 8 to LegProt 12). The overall identification success rate also increased from 88% (NCBI nr) to 93% (LegProt). Mascot peptide mass fingerprinting (PMF) searches of the LegProt database using MALDI-TOFMS data yielded a significant increase in the identification success rate from 19% (NCBI nr) to 34% (LegProt) while the average scores and average number of matched peptides showed insignificant changes. The results demonstrate that the LegProt database significantly increases legume protein identification success rates and the confidence levels compared to the commonly used NCBI nr. These improvements are primarily due to the presence of a large number of legume specific TC sequences in the LegProt database that were not found in NCBI nr. The LegProt database is freely available for download (http://bioinfo.noble.org/manuscript-support/legumedb) and will serve as a valuable resource for legume proteomics.


Asunto(s)
Péptidos/análisis , Proteínas de Plantas/análisis , Proteómica , Bases de Datos de Proteínas , Espectrometría de Masas en Tándem
19.
J Biol Chem ; 283(37): 25247-25255, 2008 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-18635546

RESUMEN

Biotic interactions in the rhizosphere are biologically important, and although many of those interactions have been well studied, the role of secreted proteins in the cross-talk between microbes and roots has not been investigated. Here, protein secretion was studied during the communication between the roots of two plants (Medicago sativa and Arabidopsis thaliana) and the bacterial symbiont of one of these species (Sinorhizobium meliloti strain Rm1021) and an opportunistic bacterial pathogen of A. thaliana (Pseudomonas syringae pv. tomato DC3000) using a proteomic approach. It was found that protein exudation in the M. sativa-S. meliloti interaction caused an increase in the secretion of seven plant proteins, such as hydrolases, peptidases, and peroxidases among others in two or more time points compared with the plant control. In addition, four proteins, all of bacterial origin, were increased 1.5-fold more in this interaction compared with S. meliloti alone. However, these proteins were not induced when M. sativa was inoculated with P. syringae DC3000. The interaction between A. thaliana and P. syringae DC3000 highly induced the secretion of several plant proteins related to defense soon after initial contact with P. syringae, but these proteins were not secreted in the incompatible interaction with S. meliloti. The results of this study reveal a specific, protein level cross-talk between roots and microbes. These results suggest that secreted proteins may be a critical component in the process of signaling and recognition that occurs between compatible and incompatible interactions.


Asunto(s)
Raíces de Plantas/microbiología , Pseudomonas syringae/genética , Arabidopsis/microbiología , Proteínas Bacterianas/metabolismo , Transporte Biológico , Cromatografía Liquida/métodos , Electroforesis en Gel Bidimensional , Espectrometría de Masas , Medicago sativa/microbiología , Modelos Biológicos , Peroxidasas/metabolismo , Enfermedades de las Plantas/genética , Enfermedades de las Plantas/microbiología , Raíces de Plantas/metabolismo , Pseudomonas syringae/metabolismo , Transducción de Señal , Factores de Tiempo , Tripsina/química
20.
AMIA Annu Symp Proc ; : 859, 2007 Oct 11.
Artículo en Inglés | MEDLINE | ID: mdl-18693961

RESUMEN

Efforts to use information technology (IT) to link pediatric primary care patients in the home with their clinicians have been rudimentary to date. We have developed a model information system that uses a ubiquitous user-interface, the telephone, and the electronic health record (EHR) to support health behavior change and weight loss for overweight urban children and their parents. In this paper, we present the technical architecture and underlying psychological theories used to build the system.


Asunto(s)
Sobrepeso/terapia , Autocuidado/métodos , Telemedicina , Niño , Humanos , Sistemas de Registros Médicos Computarizados , Teléfono
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