Autophagy initiation triggers p150Glued-AP-2ß interaction on the lysosomes and facilitates their transport.

The endocytic adaptor protein 2 (AP-2) complex binds dynactin as part of its noncanonical function, which is necessary for dynein-driven autophagosome transport along microtubules in neuronal axons. The absence of this AP-2-dependent transport causes neuronal morphology simplification and neurodegeneration. The mechanisms that lead to formation of the AP-2-dynactin complex have not been studied to date. However, the inhibition of mammalian/mechanistic target of rapamycin complex 1 (mTORC1) enhances the transport of newly formed autophagosomes by influencing the biogenesis and protein interactions of Rab-interacting lysosomal protein (RILP), another dynein cargo adaptor. We tested effects of mTORC1 inhibition on interactions between the AP-2 and dynactin complexes, with a focus on their two essential subunits, AP-2ß and p150Glued. We found that the mTORC1 inhibitor rapamycin enhanced p150Glued-AP-2ß complex formation in both neurons and non-neuronal cells. Additional analysis revealed that the p150Glued-AP-2ß interaction was indirect and required integrity of the dynactin complex. In non-neuronal cells rapamycin-driven enhancement of the p150Glued-AP-2ß interaction also required the presence of cytoplasmic linker protein 170 (CLIP-170), the activation of autophagy, and an undisturbed endolysosomal system. The rapamycin-dependent p150Glued-AP-2ß interaction occurred on lysosomal-associated membrane protein 1 (Lamp-1)-positive organelles but without the need for autolysosome formation. Rapamycin treatment also increased the acidification and number of acidic organelles and increased speed of the long-distance retrograde movement of Lamp-1-positive organelles. Altogether, our results indicate that autophagy regulates the p150Glued-AP-2ß interaction, possibly to coordinate sufficient motor-adaptor complex availability for effective lysosome transport.

Role of dynein-dynactin complex, kinesins, motor adaptors, and their phosphorylation in dendritogenesis.

One of the characteristic features of different classes of neurons that is vital for their proper functioning within neuronal networks is the shape of their dendritic arbors. To properly develop dendritic trees, neurons need to accurately control the intracellular transport of various cellular cargo (e.g., mRNA, proteins, and organelles). Microtubules and motor proteins (e.g., dynein and kinesins) that move along microtubule tracks play an essential role in cargo sorting and transport to the most distal ends of neurons. Equally important are motor adaptors, which may affect motor activity and specify cargo that is transported by the motor. Such transport undergoes very dynamic fine-tuning in response to changes in the extracellular environment and synaptic transmission. Such regulation is achieved by the phosphorylation of motors, motor adaptors, and cargo, among other mechanisms. This review focuses on the contribution of the dynein-dynactin complex, kinesins, their adaptors, and the phosphorylation of these proteins in the formation of dendritic trees by maturing neurons. We primarily review the effects of the motor activity of these proteins in dendrites on dendritogenesis. We also discuss less anticipated mechanisms that contribute to dendrite growth, such as dynein-driven axonal transport and non-motor functions of kinesins.

Ensemble modeling of the Baltic Sea ecosystem to provide scenarios for management.

We present a multi-model ensemble study for the Baltic Sea, and investigate the combined impact of changing climate, external nutrient supply, and fisheries on the marine ecosystem. The applied regional climate system model contains state-of-the-art component models for the atmosphere, sea ice, ocean, land surface, terrestrial and marine biogeochemistry, and marine food-web. Time-dependent scenario simulations for the period 1960-2100 are performed and uncertainties of future projections are estimated. In addition, reconstructions since 1850 are carried out to evaluate the models sensitivity to external stressors on long time scales. Information from scenario simulations are used to support decision-makers and stakeholders and to raise awareness of climate change, environmental problems, and possible abatement strategies among the general public using geovisualization. It is concluded that the study results are relevant for the Baltic Sea Action Plan of the Helsinki Commission.

Mussels (Mytilus spp.) in Svalbard contain microplastic particles in tissues: Implications for monitoring.

We examined the presence of microplastics in blue mussels Mytilus spp. from the intertidal zone of western Spitsbergen in Arctic Svalbard. The optical microscopy technique detected a total of 148 microplastics, with the highest concentration per mussel being 24 particles. Microplastics were found in 84% of the examined mussels. The microplastics ranged in size from <0.5 mm to 5 mm and consisted of fibers (83%), fragments (13%), plates (3%), and spherules (1%). The micro-Raman spectroscopy technique revealed four different types of polymers: polyethylene (67%), nylon-12 (17%), low-density polyethylene (11%), and polypropylene (5%). Our research shows that Arctic coastal waters are polluted with microplastics notwithstanding their remoteness. These findings suggest that microplastic contamination may harm marine life and coastal ecosystems and require further research into long-term environmental effects. We also indicate that intertidal mussels may be beneficial for monitoring microplastics because they can be collected without involving diving.

Rab11 regulates autophagy at dendritic spines in an mTOR- and NMDA-dependent manner.

Synaptic plasticity is a process that shapes neuronal connections during neurodevelopment and learning and memory. Autophagy is a mechanism that allows the cell to degrade its unnecessary or dysfunctional components. Autophagosomes appear at dendritic spines in response to plasticity-inducing stimuli. Autophagy defects contribute to altered dendritic spine development, autistic-like behavior in mice, and neurological disease. While several studies have explored the involvement of autophagy in synaptic plasticity, the initial steps of the emergence of autophagosomes at the postsynapse remain unknown. Here, we demonstrate a postsynaptic association of autophagy-related protein 9A (Atg9A), known to be involved in the early stages of autophagosome formation, with Rab11, a small GTPase that regulates endosomal trafficking. Rab11 activity was necessary to maintain Atg9A-positive structures at dendritic spines. Inhibition of mTOR increased Rab11 and Atg9A interaction and increased the emergence of LC3 positive vesicles, an autophagosome membrane-associated protein marker, in dendritic spines when coupled to NMDA receptor stimulation. Dendritic spines with newly formed LC3+ vesicles were more resistant to NMDA-induced morphologic change. Rab11 DN overexpression suppressed appearance of LC3+ vesicles. Collectively, these results suggest that initiation of autophagy in dendritic spines depends on neuronal activity and Rab11a-dependent Atg9A interaction that is regulated by mTOR activity.

Characterization of surface-exposed structural loops as insertion sites for foreign antigen delivery in calicivirus-derived VLP platform.

Chimeric virus-like particles (cVLPs) show great potential in improving public health as they are safe and effective vaccine candidates. The capsid protein of caliciviruses has been described previously as a self-assembling, highly immunogenic delivery platform. The ability to significantly induce cellular and humoral immunity can be used to boost the immune response to low immunogenic foreign antigens displayed on the surface of VLPs. Capsid proteins of caliciviruses despite sequence differences share similar architecture with structural loops that can be genetically modified to present foreign epitopes on the surface of cVLPs. Here, based on the VP1 protein of norovirus (NoV), we investigated the impact of the localization of the epitope in different structural loops of the P domain on the immunogenicity of the presented epitope. In this study, three distinct loops of NoV VP1 protein were genetically modified to present a multivalent influenza virus epitope consisting of a tandem repeat of M2/NP epitopes. cVLPs presenting influenza virus-conserved epitopes in different localizations were produced in the insect cells and used to immunize BALB/c mice. Specific reaction to influenza epitopes was compared in sera from vaccinated mice to determine whether the localization of the foreign epitope has an impact on the immunogenicity.

Typical and anomalous pathways of surface-floating material in the Northern North Atlantic and Arctic Ocean.

Surface waters of the oceans carry large amounts of material, including sediment grains, plankton organisms, and ice crystals, as well as pollutants, e.g., oil and plastic. Transport and spatio-temporal distribution of this material depend on its properties and on the dynamical processes in the ocean mixed layer-currents, waves, turbulence, and convective mixing-acting at a wide range of scales. Due to its importance for marine physics, biogeochemistry and ecology, substantial research efforts have been invested in recent years in observations and modelling of ocean material transport, especially in the context of marine plastic pollution. Nevertheless, many important questions remain unanswered. In this work, numerically simulated trajectories of surface-floating particles in the period 1993-2020 are used to analyse typical and anomalous transport pathways in the northern North Atlantic and the Arctic Ocean. Model validation is performed based on additional simulations of 387 buoy tracks from the International Arctic Buoy Programme in the years 2014-2020. The trajectories are computed based on surface currents from a hydrodynamic model and Stokes drift from a spectral wave model. It is shown that due to high amplitudes of Stokes drift (comparable with wind-induced currents in ice-free parts of the domain of study), combined with high directional variability, the drifting paths are substantially modified in ice-free regions, underlying the important role of wave-induced currents in surface material transport. A statistical analysis of [Formula: see text] trajectories reveals patterns of connections between nearshore locations in the domain of study, the associated drift times and path sinuosity. Seasonal variability of transport, which differs between the Arctic Ocean and the North Atlantic, is found for typical transport routes following the larger-scale circulation patterns. Crucially, in both sub-domains episodic, but very strong transport events between otherwise isolated locations occur, associated with anomalous atmospheric circulation and, arguably, providing 'windows of opportunity' for dispersal of various organisms to new locations. It is shown for two examples in the North Atlantic region that an unusual combination of atmospheric circulation indices explains the anomalous transport, thus providing a predictive tool for future events. In the Arctic, analogous phenomena are modified by the state of the sea ice cover.

Wave fetch and distance from the ocean determine the distribution of macroplastics in the intertidal zone of central Spitsbergen, Arctic.

In this study, we estimated the variety and distribution of macroplastics in the central part of Spitsbergen, Svalbard archipelago, Arctic. All marine litter photos were georeferenced, then identified using the OSPAR (2010) classification guide. The majority (90% of all objects) of marine debris was macroplastic with average number in the study area being 2.0 ± 0.4 objects per 100 m. It was determined that the full variety of macroplastic categories in the study area can be found after surveying approx. 8 km of coastline. Correlation analysis showed that the amount of macroplastic accumulated on the beaches decreases with distance from the open ocean and increases with wave fetch. When zoning the entire study area on the basis of a cluster analysis of the distribution of macroplastics, it was found that the geographical proximity of the sections is less important than the wave fetch.

Coming home - Boreal ecosystem claims Atlantic sector of the Arctic.

The Atlantification of the European Arctic has been an increasingly discussed topic in polar science over the past two decades. The alteration of local marine ecosystems towards a more temperate state and the appearance/range expansion of subarctic-boreal species at higher latitudes is a complex phenomenon induced mainly by the changing properties of Atlantic water (AW) transported from the south. Areas under the direct influence of AW experience biological Atlantification of their communities on all trophic levels, resulting in the growing complexity of arctic food webs. Here, besides summarising the main documented messages of biological Atlantification, we take a critical view on the threat posed on Arctic marine communities. We take into account the formation of the Arctic marine fauna, as well as the nature of (re)colonisation of Arctic sites by boreal organisms when evaluating the extent of the issue. We take a look at the history of Arctic colonisations by boreal organisms in an attempt to identify 'neonative taxa returning home'. We also highlight the role of floating plastic debris as an 'instrument from the toolbox of the Anthropocene' aiding the distribution of marine taxa.

Will shrinking body size and increasing species diversity of crustaceans follow the warming of the Arctic littoral?

Over thirty species of littoral marine Gammaridea occur along the coasts of the North Atlantic. From one to several species can coexist in a single region. There is an evident, inverse relationship between egg incubation time and temperature (from 14 to >120 days) and consequent trends in the size of the animals on reaching maturity (from 5 mm in warmer waters to 30 mm in the coldest ones) and in lifespan (from <6 months to >5 years). Littoral gammarids are a good example of the shrinking size effect of increasing temperatures and size-related species diversity. In large species, the annual cohorts of the population (3-5 annual size groups) functionally replace the adults of smaller species. The ongoing warming of the European Arctic seas may extend the distribution limits of boreal species so that more Gammarus species may appear on northern coasts hitherto occupied by just one or at most two species.

Range extension of a boreal amphipod Gammarus oceanicus in the warming Arctic.

The recent (2008-2016) occurrence of a boreal intertidal amphipod Gammarus oceanicus along the Spitsbergen coast is compared with corresponding data from 1980 to 1994. We aimed to compare the pace of environmental changes in the area (ice retreat, temperature increase) with distribution change of G. oceanicus. Material for the study was collected from intertidal, at low water level from over 100 locations on Spitsbergen, the main island of Svalbard archipelago (expanding from 76 to 80°N). The west coast of the island has been exposed to a steady increase in sea surface and air temperature (2°C in 20 years), as well as a significant decrease in fast ice duration (from over 5 months to less than 1 per year). A total length of more than 3,600 km of the island's coastline has been recently impacted by warming. Of the two sibling Gammarus species that dwell in the Spitsbergen littoral, G. setosus, the local cold water species remains generally where it was observed about 20-30 years ago. By contrast, boreal G. oceanicus has expanded its distribution range by over 1,300 km along the west and north coasts of Spitsbergen and gained dominating position on the number of sites, where it was previously just an occasional species.

Subglacial discharges create fluctuating foraging hotspots for sea birds in tidewater glacier bays.

Although the processes occurring at the front of an ice face in tidewater glacier bays still await thorough investigation, their importance to the rapidly changing polar environment is spurring a considerable research effort. Glacier melting, sediment delivery and the formation of seabird foraging hotspots are governed by subglacial discharges of meltwater. We have combined the results of tracking black-legged kittiwakes Rissa tridactyla equipped with GPS loggers, analyses of satellite images and in situ measurements of water temperature, salinity and turbidity in order to examine the magnitude and variability of such hotspots in the context of glacier bay hydrology. Small though these hotspots are in size, foraging in them appears to be highly intensive. They come into existence only if the subglacial discharge reaches the surface, if the entrainment velocity at a conduit is high and if there is sufficient macroplankton in the entrainment layer. The position and type of subglacial discharges may fluctuate in time and space, thereby influencing glacier bay hydrology and the occurrence of foraging hotspots.

Meiofauna as descriptor of tourism-induced changes at sandy beaches.

Tourism has long been considered as a 'clean industry' with almost no negative effects on the environment. This study demonstrated, in two different coastal systems (Mediterranean and Baltic), that tourism related activities are particularly affecting the sandy beach meio- and nematofauna in the upper beach zone, the specific ecotone in which many meiofauna species from both the marine and the terrestrial environment congregate. Tourist upper beaches are characterized by a lower % total organic matter (%TOM), lower densities, lower diversities (absence of Insecta, Harpacticoida, Oligochaeta, terrestrial nematodes and marine Ironidae nematodes) and higher community stress compared to nearby non-tourist locations. The %TOM was found to be the single most important factor for the observed differences in meiofauna assemblage structure at tourist versus non-tourist beaches in both the Mediterranean and the Baltic region. The free-living nematode assemblages from tourist upper zones depart significantly from expectations based on random selections from the regional nematode species pool. Furthermore upper zone assemblages are characterised by a low species diversity consisting of taxonomically closely related nematode species with r-strategist features. Generally, faunal differences between tourist and non-tourist beaches are decreasing towards the lower beach zones.

Unexpected Levels of Biological Activity during the Polar Night Offer New Perspectives on a Warming Arctic.

The current understanding of Arctic ecosystems is deeply rooted in the classical view of a bottom-up controlled system with strong physical forcing and seasonality in primary-production regimes. Consequently, the Arctic polar night is commonly disregarded as a time of year when biological activities are reduced to a minimum due to a reduced food supply. Here, based upon a multidisciplinary ecosystem-scale study from the polar night at 79°N, we present an entirely different view. Instead of an ecosystem that has entered a resting state, we document a system with high activity levels and biological interactions across most trophic levels. In some habitats, biological diversity and presence of juvenile stages were elevated in winter months compared to the more productive and sunlit periods. Ultimately, our results suggest a different perspective regarding ecosystem function that will be of importance for future environmental management and decision making, especially at a time when Arctic regions are experiencing accelerated environmental change [1].

The oxygen fluxes of sandy littoral areas: quantifying primary and secondary producers in the Baltic Sea.

The study aimed to estimate the total oxygen flow through the shallow littoral of the Gulf of Gdansk (southern Baltic Sea). Daily primary production and daily oxygen consumption by meso- and macroplankton and meio- and macrobenthos were measured, as well as the remaining (abiotic/microbial) oxygen consumption of the water column and bottom sediment. The daily gross primary production was 5.0 l of oxygen m(-2), oxygen consumption was 9.2 l m(-2), of which 16% were used by the water column and 84% by the bottom sediment. Abiotic oxygen consumption in water column contributed to less than 5% of the total oxygen consumption, and in the bottom sediment to 67%. Mesoplankton in the water column and meiobenthos in the bottom sediments were the major oxygen consumers in the littoral (67% and 26%, respectively).

Global patterns and predictions of seafloor biomass using random forests.

A comprehensive seafloor biomass and abundance database has been constructed from 24 oceanographic institutions worldwide within the Census of Marine Life (CoML) field projects. The machine-learning algorithm, Random Forests, was employed to model and predict seafloor standing stocks from surface primary production, water-column integrated and export particulate organic matter (POM), seafloor relief, and bottom water properties. The predictive models explain 63% to 88% of stock variance among the major size groups. Individual and composite maps of predicted global seafloor biomass and abundance are generated for bacteria, meiofauna, macrofauna, and megafauna (invertebrates and fishes). Patterns of benthic standing stocks were positive functions of surface primary production and delivery of the particulate organic carbon (POC) flux to the seafloor. At a regional scale, the census maps illustrate that integrated biomass is highest at the poles, on continental margins associated with coastal upwelling and with broad zones associated with equatorial divergence. Lowest values are consistently encountered on the central abyssal plains of major ocean basins The shift of biomass dominance groups with depth is shown to be affected by the decrease in average body size rather than abundance, presumably due to decrease in quantity and quality of food supply. This biomass census and associated maps are vital components of mechanistic deep-sea food web models and global carbon cycling, and as such provide fundamental information that can be incorporated into evidence-based management.