Construction of hub transcription factor-microRNAs-messenger RNA regulatory network in recurrent implantation failure.

PURPOSE: Recurrent implantation failure (RIF) affects up to 10% of in vitro fertilization (IVF) patients worldwide. However, the pathogenesis of RIF remains unclear. This study was aimed at identifying hub transcription factors (TFs) of RIF in bioinformatics approaches. METHODS: The GSE111974 (mRNA), GSE71332 (miRNA), and GSE103465 (mRNA) datasets were downloaded from the Gene Expression Omnibus database from human endometrial tissue using R version 4.2.1 and used to identify differentially expressed TFs (DETFs), differentially expressed miRNAs, and differentially expressed genes for RIF, respectively. DETFs were subjected to functional enrichment analysis and the protein-protein interaction network analysis using the Search Tool for the Retrieval of Interacting Genes (version 11.5) database. Hub TFs were identified using the cytoHubb plug-in, after which a hub TF-miRNA-mRNA network was constructed using Cytoscape v3.8.2. RESULTS: Fifty-seven DETFs were identified, in which Gene Ontology analysis revealed to be mainly involved in the regulation of transcription. Kyoto Encyclopedia of Genes and Genomes pathway analysis suggested that DETFs were enriched in transcriptional misregulation in cancer, aldosterone synthesis and secretion, AMPK signaling pathway, and cGMP-PKG signaling pathway. EOMES, NKX2-1, and POU5F1 were identified as hub TFs, and a hub TF-miRNA-mRNA regulatory network was constructed using these three hub TFs, four miRNAs, and four genes. CONCLUSION: Collectively, we identified three promising molecular biomarkers for the diagnosis of RIF, which may further be potential therapeutic targets. This study provides novel insights into the molecular mechanisms underlying RIF. However, further experiments are required to verify these results.

The kinetics for ammonium and nitrite oxidation under the effect of hydroxylamine.

The kinetics for ammonium (NH4(+)) oxidation and nitrite (NO2(-)) oxidation under the effect of hydroxylamine (NH2OH) were studied by respirometry using the nitrifying sludge from a laboratory-scale sequencing batch reactor. Modified models were used to estimate kinetics parameters of ammonia and nitrite oxidation under the effect of hydroxylamine. An inhibition effect of hydroxylamine on the ammonia oxidation was observed under different hydroxylamine concentration levels. The self-inhibition coefficient of hydroxylamine oxidation and noncompetitive inhibition coefficient of hydroxylamine for nitrite oxidation was estimated by simulating exogenous oxygen-uptake rate profiles, respectively. The inhibitive effect of NH2OH on nitrite-oxidizing bacteria was stronger than on ammonia-oxidizing bacteria. This work could provide fundamental data for the kinetic investigation of the nitrification process.

Metabolomic insight into regulatory mechanism of heterotrophic bacteria nitrification-aerobic denitrification bacteria to high-strength ammonium wastewater treatment.

This work aimed to elucidate the metabolic mechanism of heterotrophic nitrification-aerobic denitrification (HN-AD) bacteria influenced by varying concentrations of ammonium nitrogen (NH4+-N) in high-strength synthetic wastewater treatment. The results showed that the removal rates of NH4+-N and total nitrogen, along with enzymatic activities related to nitrification and denitrification, increased with rising NH4+-N concentrations (N500:500 mg/L, N1000:1000 mg/L and N2000:2000 mg/L). The relative abundances of HN-AD bacteria were 50 %, 62 % and 82 % in the three groups. In the N2000 group, the cAMP signaling pathway, glycerophospholipid metabolites, purines and pyrimidines related to DNA/RNA synthesis, electron donor NAD+-related energy, the tricarboxylic acid (TCA) cycle and glutamate metabolism were upregulated. Therefore, influent NH4+-N at 2000 mg/L promoted glutamate metabolism to accelerate the TCA cycle, and enhanced cellular energy and advanced denitrification activity of bacteria for HN-AD. This mechanism, in turn, enhanced microbial growth and the carbon and nitrogen metabolism of bacteria for HN-AD.

Exposure to Ambient Air Pollutant PM10 in the Second Trimester of Pregnancy Is Associated with Preterm Birth: A Birth-Based Health Information Cohort Study.

Objectives: We evaluated the effects of exposure to high concentrations of particulate matter (PM)10 on preterm birth (PTB) and identified a critical concentration of PM10 that could lead to PTB via a birth-based health information cohort study. Methods: We conducted a birth-based cohort study consisting of nonanomalous singleton births at 22-42 weeks. PTB was defined as babies born alive before 37 weeks of pregnancy. Pregnancy period exposure averages were estimated for PM10 based on the China National Environmental Monitoring Centre (CNEMC). Pregnant women who lived within 50 km of the monitor station were recruited into this study. Logistic regression analyses were performed to determine the association between PTB and exposure to PM10 at different pregnancy periods with adjustment for confounding factors. Results: The relative frequency of PTB was 8.7% in the study cohort of 5,291 singleton live births. A total of 1137 women had a high level of PM10 exposure (≥60 µg/m3) in the second trimester of pregnancy. The average concentrations of PM10 in the first, second, and third trimesters of pregnancy and throughout pregnancy were 53.8 µg/m3, 54.2 µg/m3, 55.6 µg/m3, and 54.3 µg/m3, respectively. The generalized additive model (GAM) analysis showed that there was a nonlinear correlation between PM10 and PTB in the second trimester of pregnancy (P < 0.001). The adjusted odds ratio between PTB and low concentration PM10 exposure (PM10 < 60 µg/m3) in the second trimester of pregnancy was 1.01 (95% CI 0.95-1.05). However, high PM10 exposure (PM10 ≥ 60 µg/m3) in the second trimester of pregnancy had an increased PTB risk even after adjustment for coexisting risk factors with an adjusted odds ratio of 1.78 (95% CI 1.69-1.87), and the incidence of PTB increased with an increase in PM10 exposure. Conclusions: Our research discovered that exposure to high levels of PM10 increases the risk of PTB and the second trimester is the most vulnerable gestational period to ambient air pollution exposure. PM10 concentrations more than 60 µg/m3 are detrimental to pregnant women in their second trimester. This study has implications for health informatics-oriented healthcare decision support systems.

[Mechanism of trehalose-enhanced metabolism of heterotrophic nitrification-aerobic denitrification community under high-salt stress].

Heterotrophic nitrification-aerobic denitrification (HN-AD) bacteria are aerobic microorganisms that can remove nitrogen under high-salt conditions, but their performance in practical applications are not satisfactory. As a compatible solute, trehalose helps microorganisms to cope with high salt stress by participating in the regulation of cellular osmotic pressure, and plays an important role in promoting the nitrogen removal efficiency of microbial populations in the high-salt environment. We investigated the mechanism of exogenous-trehalose-enhanced metabolism of HN-AD community under high-salt stress by starting up a membrane aerobic biofilm reactor (MABR) to enrich HN-AD bacteria, and designed a C150 experimental group with 150 µmol/L trehalose addition and a C0 control group without trehalose. The reactor performance and the community structure showed that NH4+-N, total nitrogen (TN) and chemical oxygen demand (COD) removal efficiency were increased by 29.7%, 28.0% and 29.1%, respectively. The total relative abundance of salt-tolerant HN-AD bacteria (with Acinetobacter and Pseudofulvimonas as the dominant genus) in the C150 group reached 66.8%, an 18.2% increase compared with that of the C0 group. This demonstrated that trehalose addition promoted the enrichment of salt-tolerant HN-AD bacteria in the high-salt environment to enhance the nitrogen removal performance of the system. In-depth metabolomics analysis showed that the exogenous trehalose was utilized by microorganisms to improve proline synthesis to increase resistance to high-salt stress. By regulating the activity of cell proliferation signaling pathways (cGMP-PKG, PI3K-Akt), phospholipid metabolism pathway and aminoacyl-tRNA synthesis pathway, the abundances of phosphoethanolamine, which was one of the glycerophospholipid metabolites, and purine and pyrimidine were up-regulated to stimulate bacterial aggregation and cell proliferation to promote the growth of HN-AD bacteria in the high-salt environment. Meanwhile, the addition of trehalose accelerated the tricarboxylic acid (TCA) cycle, which might provide more electron donors and energy to the carbon and nitrogen metabolisms of HN-AD bacteria and promote the nitrogen removal performance of the system. These results may facilitate using HN-AD bacteria in the treatment of high-salt and high-nitrogen wastewater.

Monitoring the nitrification and identifying the endpoint of ammonium oxidation by using a novel system of titrimetry.

Based on the structure of the hybrid respirometer previously developed in our group, a novel implementation for titrimetry was developed, in which two pH electrodes were installed at the inlet and outlet of the measuring cell. The software capable of digital filtering and titration time delay correction was developed in LabVIEW. The hardware and software of the titrimeter and the respirometer were integrated to construct a novel system of respirometry-titrimetry. The system was applied to monitor a batch nitrification process. The obtained profiles of oxygen uptake rate (OUR) and hydrogen ion production rate (HPR) are consistent with each other and agree with the principle of the biological nitrification reaction. According to the OUR and HPR measurements, the oxidized ammonium concentrations were estimated accurately. Furthermore, the endpoint of ammonium oxidation was identified with much higher sensitivity by the HPR measurement. The system could be potentially used for on-line monitoring of biochemical reactions occurring in any kind of bioreactors because its measuring cell is completely independent of the bioreactor.

N2O profiles in the enhanced CANON process via long-term N2H4 addition: minimized N2O production and the influence of exogenous N2H4 on N2O sources.

Production of the greenhouse gas nitrous oxide (N2O) from the completely autotrophic nitrogen removal over nitrite (CANON) process is of growing concern. In this study, the effect of added hydrazine (N2H4) on N2O production during the CANON process was investigated. Long-term trace N2H4 addition minimized N2O production (0.018% ± 0.013% per unit total nitrogen removed) and maintaining high nitrogen removal capacity of CANON process (nitrogen removal rate and TN removal efficiency was 450 ± 60 mg N/L/day and 71 ± 8%, respectively). Ammonium oxidizing bacteria (AOB) was the main N2O producer. AOB activity inhibition by N2H4 decreased N2O production during aeration, and the N2H4 concentration was negatively correlated with N2O production rate in NH4+ oxidation via AOB, whereas N2O production was facilitated under anaerobic conditions because hydroxylamine (NH2OH) production was accelerated due to anammox bacteria (AnAOB) activity strengthen via N2H4. Added N2H4 completely degraded in the initial aeration phases of the CANON SBR, during which some N2H4 intensified anammox for total nitrogen removal to eliminate N2O production from nitrifier denitrification (ND) by anammox-associated, while the remaining N2H4 competed with NH2OH for hydroxylamine oxidoreductase (HAO) in AOB to inhibit intermediates formation that result in N2O production via NH2OH oxidation (HO) pathway, consequently decreasing total N2O production.

[Treatment of Piggery Biogas Slurry by Enhanced Biological Contact Oxidation with HN-AD Bacteria].

The conventional pretreatment process for swine wastewater is anaerobic fermentation. This process leads to the formation of high ammonia nitrogen, low carbon, and piggery biogas slurry, which usually results in poor denitrification effect, complicated process flow, and long startup period for the subsequent treatment process. In this study, a novel biological enhanced Biological Contact Oxidation (BCO) process using HN-AD bacteria as microbial inoculants, and PAN activated carbon fiber filler as biofilm carrier was proposed for the treatment of piggery biogas slurry. In the early stage of sludge acclimation, it was found that when NH4+-N concentration was higher than 500 mg·L-1, the nitrification and COD removal in BCO was severely inhibited. When the BCO was enhanced by HN-AD bacteria, however, the tolerance concentration of NH4+-N for bacteria in BCO could reach 600 mg·L-1 and the removal efficiency of NH4+-N, COD, and TN could still remain at a high level. The bio-enhanced BCO process was used to treat the piggery biogas slurry. The average removal rates of NH4+-N, TN, and COD were 86.9%, 70.5%, and 74.4%, respectively, which were higher than the 57.6%, 50.3%, and 50.0% of the traditional treatment process. The concentration of the pollutants mentioned above in the effluent was below the relevant discharge standards. The changes in the microbial community structure during the enrichment process of functional bacteria were studied by high-throughput sequencing technique. The results showed that the dominant bacteria belonging to HN-AD in the biofilm during the sludge acclimation process was Alcaligenes. After the addition of the HN-AD agent, however, the dominant bacteria were Diaphorobacter, Acinetobacter, and Thauer, and the relative abundance of Acinetobacter was much higher than that in the microbial inoculants. The results of scanning electron microscopy further confirmed the existence of bio-enhancement. The surface of the biofilm layer tightly attached to the filler was enriched with rod-like and globular HN-AD functional bacteria.

[Characteristics of Nitrobacteria in SBR with Trace N2H4 Addition].

A sequencing batch reactor (SBR) was conducted to perform nitrification process. The influence of long-term trace hydrazine (N2H4) addition (about 3 mg·L-1) on ammonium oxidizing bacteria (AOB) and nitrite oxidizing bacteria (NOB) in nitrifying sludge was investigated. The result indicated that Nitrosococcu, Nitrosomonas and Nitrosospira were related to AOB, and Nitrobacter was related to NOB in nitrifying sludge with N2H4 addition, respectively. The estimates of AOB population (in dry sludge) with N2H4 addition decreased from 1.0×109 to 2.09×104 copies·g-1, and those of NOB decreased from 1.28×107 to 2.56×105 copies·g-1. AOB was more sensitive to environmental factors than NOB, the effect of inhibition and toxicity on nitrobacteria caused more loss of AOB abundances than that of NOB, but quantitative real-time PCR could not determine the inhibition of N2H4 on microbial activity of AOB and NOB. The nitrobacteria activity was destroyed with long-term trace N2H4 addition, and the reactor collapsed. Consequently, it was possibly unable to inhibit NOB activity by controlling the added N2H4 concentration, and further take off NOB in nitrification process for improving nitrogen removal.

Effect of trace hydrazine addition on the functional bacterial community of a sequencing batch reactor performing completely autotrophic nitrogen removal over nitrite.

A sequencing batch reactor (SBR) was conducted to perform completely autotrophic nitrogen removal over nitrite (CANON). The effect of long-term trace N2H4 addition on ammonium oxidizing bacteria (AOB) and anaerobic AOB (AnAOB) in the CANON system was investigated. AOB and AnAOB primarily related to Nitrosococcus, Nitrosomonas and Candidatus scalindua, respectively. Before and after trace N2H4 addition, the estimates of AOB population decreased from 1.03×10(7) to 6.25×10(4)copies/g (dry sludge), but that of AnAOB increased from 3.14×10(9) to 5.86×10(10)copies/g (dry sludge). Despite there was a partially negative impact on AOB growth, the trace N2H4 addition exerted a stronger inhibition on nitrite oxidizing bacteria (NOB) and promoted AnAOB growth, which improved the nitrogen removal of the CANON system. Sludge granules enriched under long-term trace N2H4 addition were spherical and ellipsoidal, and the aerobic AOB were mainly located on the outer layers while AnAOB occupied most of the interior parts.

The enhancement of completely autotrophic nitrogen removal over nitrite (CANON) by N2H4 addition.

The long-term addition of N2H4 to completely autotrophic nitrogen removal over nitrite (CANON) sequencing batch reactors (SBRs) recovered and enhanced their autotrophic nitrogen removal capacity while simultaneously reducing their production of NO3(-). The total nitrogen (TN) removal rate and TN removal efficiency of the process increased from 0.202±0.011 to 0.370±0.016 kg N/m(3)/d and from 65.1±3.75% to 77.4±3.8%, respectively, and the molar ratio of NO3(-) production to NH4(+) removal (MRNN) decreased to 0.058. The most effective concentration of N2H4 addition was approximately 3.99 mg/L. N2H4 could increase the specific growth rate of anaerobic ammonium-oxidizing bacteria (AnAOB) and inhibit aerobic ammonia oxidation. The electrons released from the oxidation of additional N2H4 using hydrazine dehydrogenase (HDH), which substituted the electrons from NO2(-) oxidation to NO3(-), replenished the consumption of AnAOB anabolism and significantly reduced the consequent NO3(-) production.