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1.
Genomics ; 116(5): 110893, 2024 Jun 27.
Artículo en Inglés | MEDLINE | ID: mdl-38944355

RESUMEN

Understanding phytohormonal signaling is crucial for elucidating plant defense mechanisms against environmental stressors. However, knowledge regarding phytohormone-mediated tolerance pathways under salt stress in Elymus sibiricus, an important species for forage and ecological restoration, remains limited. In this study, transcriptomic and metabolomic approaches uncover the dynamics of phytohormonal signaling in Elymus sibiricus under salt stress. Notably, four hours after exposure to salt, significant activity was observed in the ABA, JA, IAA, and CTK pathways, with ABA, JA, JA-L-Ile, and IAA identified as key mediators in the response of Elymus sibiricus' to salinity. Moreover, SAPK3, Os04g0167900-like, CAT1, MKK2, and MPK12 were identified as potential central regulators within these pathways. The complex interactions between phytohormones and DEGs are crucial for facilitating the adaptation of Elymus sibiricus to saline environments. These findings enhance our understanding of the salt tolerance mechanisms in Elymus sibiricus and provide a foundation for breeding salt-resistant varieties.

2.
BMC Cardiovasc Disord ; 23(1): 624, 2023 12 21.
Artículo en Inglés | MEDLINE | ID: mdl-38129785

RESUMEN

BACKGROUND: Richter's syndrome (RS) defines the transformation of chronic lymphocytic leukemia into high-grade lymphoma, which usually involves lymph nodes and bone marrow. Extranodal involvement of the heart is an extremely rare condition. Patients with heart involvement tended to have a low response to chemotherapy and relative poor prognosis. The transformation process of RS is often insidious and nonspecific making it challenging to diagnose. CASE PRESENTATION: A 64-year-old woman wih a history of chronic lymphocytic leukemia (CLL) presented with intermittent chest pain and was diagnosed with non-ST-elevation myocardial infarction (NSTEMI). However, the contrast enhanced echocardiography revealed a large irregular mass, measuring about 75.4 mm × 37.5 mm, located on the lateral and posterior wall of the right ventricle. Biopsy of the cardiac mass and the results revealed diffuse large B-cell lymphoma. CONCLUSIONS: We present a case of a 64-year-old woman with aggressive diffuse large B-cell lymphoma involving the heart. This case could provide some insights in the diagnosis of cardiac lymphoma.


Asunto(s)
Neoplasias Cardíacas , Leucemia Linfocítica Crónica de Células B , Linfoma de Células B Grandes Difuso , Femenino , Humanos , Persona de Mediana Edad , Biopsia , Leucemia Linfocítica Crónica de Células B/diagnóstico , Leucemia Linfocítica Crónica de Células B/tratamiento farmacológico , Leucemia Linfocítica Crónica de Células B/patología , Linfoma de Células B Grandes Difuso/complicaciones , Linfoma de Células B Grandes Difuso/diagnóstico , Linfoma de Células B Grandes Difuso/tratamiento farmacológico , Neoplasias Cardíacas/diagnóstico , Neoplasias Cardíacas/patología
3.
Sensors (Basel) ; 23(14)2023 Jul 24.
Artículo en Inglés | MEDLINE | ID: mdl-37514934

RESUMEN

In recent years, grassland monitoring has shifted from traditional field surveys to remote-sensing-based methods, but the desired level of accuracy has not yet been obtained. Multi-temporal hyperspectral data contain valuable information about species and growth season differences, making it a promising tool for grassland classification. Transformer networks can directly extract long-sequence features, which is superior to other commonly used analysis methods. This study aims to explore the transformer network's potential in the field of multi-temporal hyperspectral data by fine-tuning it and introducing it into high-powered grassland detection tasks. Subsequently, the multi-temporal hyperspectral classification of grassland samples using the transformer network (MHCgT) is proposed. To begin, a total of 16,800 multi-temporal hyperspectral data were collected from grassland samples at different growth stages over several years using a hyperspectral imager in the wavelength range of 400-1000 nm. Second, the MHCgT network was established, with a hierarchical architecture, which generates a multi-resolution representation that is beneficial for grass hyperspectral time series' classification. The MHCgT employs a multi-head self-attention mechanism to extract features, avoiding information loss. Finally, an ablation study of MHCgT and comparative experiments with state-of-the-art methods were conducted. The results showed that the proposed framework achieved a high accuracy rate of 98.51% in identifying grassland multi-temporal hyperspectral which outperformed CNN, LSTM-RNN, SVM, RF, and DT by 6.42-26.23%. Moreover, the average classification accuracy of each species was above 95%, and the August mature period was easier to identify than the June growth stage. Overall, the proposed MHCgT framework shows great potential for precisely identifying multi-temporal hyperspectral species and has significant applications in sustainable grassland management and species diversity assessment.

4.
Sensors (Basel) ; 23(13)2023 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-37447759

RESUMEN

Pixel-level information of remote sensing images is of great value in many fields. CNN has a strong ability to extract image backbone features, but due to the localization of convolution operation, it is challenging to directly obtain global feature information and contextual semantic interaction, which makes it difficult for a pure CNN model to obtain higher precision results in semantic segmentation of remote sensing images. Inspired by the Swin Transformer with global feature coding capability, we design a two-branch multi-scale semantic segmentation network (TMNet) for remote sensing images. The network adopts the structure of a double encoder and a decoder. The Swin Transformer is used to increase the ability to extract global feature information. A multi-scale feature fusion module (MFM) is designed to merge shallow spatial features from images of different scales into deep features. In addition, the feature enhancement module (FEM) and channel enhancement module (CEM) are proposed and added to the dual encoder to enhance the feature extraction. Experiments were conducted on the WHDLD and Potsdam datasets to verify the excellent performance of TMNet.


Asunto(s)
Tecnología de Sensores Remotos , Semántica , Suministros de Energía Eléctrica , Columna Vertebral , Procesamiento de Imagen Asistido por Computador
5.
Zhongguo Yi Xue Ke Xue Yuan Xue Bao ; 45(3): 484-492, 2023 Jun.
Artículo en Zh | MEDLINE | ID: mdl-37407538

RESUMEN

Parkinson's disease(PD)is the second most common neurodegenerative disease after Alzheimer's disease,with high morbidity and high disability rate.Since the early symptoms of PD are not typical and often similar to those of normal aging or other diseases.It is easy to missed diagnosis and misdiagnosis,which seriously affects the diagnosis and treatment of this disease and aggravetes the burden on the patients' life.MicroRNAs(miRNA)are a class of endogenous non-coding RNAs that are involved in post-transcriptional regulation by binding to target messenger RNAs(mRNA).They are highly conserved,short,easy to obtain,and can stably exist in peripheral body fluids.They have been used as biomarkers for a variety of diseases.Recent studies have demonstrated that miRNA play an important role in the development of PD.This paper reviews the recent research progress of miR-7/124/155,three mature miRNA in PD,aiming to provide reference for clarifying the pathogenesis and guiding the diagnosis and treatment of PD.


Asunto(s)
MicroARNs , Enfermedades Neurodegenerativas , Enfermedad de Parkinson , Humanos , MicroARNs/genética , Regulación de la Expresión Génica , Biomarcadores/metabolismo
6.
J Basic Microbiol ; 59(11): 1082-1091, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31544274

RESUMEN

Bacterial blight caused by Xanthomonas oryzae pv. oryzae (Xoo) is one of the most destructive diseases affecting rice worldwide. However, little is known about the population structure of this organism in Guangxi Zhuang Autonomous Region, South China. Here, pathotypic and DNA fingerprint analyses were conducted to characterize the isolates of Xoo collected from rice leaves in five districts of the region from 2013 to 2016. Their pathogenicity was tested by leaf clipping, and the DNA fingerprints were analyzed by repetitive sequence-based polymerase chain reaction and endogenous insertion sequence element-based polymerase chain reaction assays using the repetitive extragenic palindromic sequence and enterobacterial repetitive intergenic consensus primers, respectively. Pathogenicity assays of 70 representative isolates were conducted using a series of near-isogenic lines and two new pathotypes were identified. All the pathotypes were found to be incompatible with xa5 and Xa7. One pathotype was virulent to Xa14, Xa21, and Xa23, whereas another virulent to Xa21 and Xa23, but incompatible with Xa14. A dendrogram generated for the data sets obtained from DNA fingerprinting suggested the prevalence of high genetic diversity of Xoo throughout Guangxi, and no association between the molecular haplotypes and pathotypes was identified.


Asunto(s)
Oryza/microbiología , Enfermedades de las Plantas/microbiología , Xanthomonas/genética , Xanthomonas/patogenicidad , China , Dermatoglifia del ADN , Variación Genética , Haplotipos , Hojas de la Planta/microbiología , Virulencia
7.
IUBMB Life ; 69(9): 660-667, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28686797

RESUMEN

Asiatic acid (AA) could attenuate ischemia/reperfusion induced myocardial apoptosis through upregulating the Akt/GSK-3ß/HIF-1α pathway. HIF-3α is a negative regulator of HIF-1α, whose mRNA is a potential target of miR-1290. AA could upregulate miR-1290 in non-small-cell lung cancer A549 cells. This work aimed to investigate whether AA could inhibit hypoxia induced cardiomyocyte apoptosis through regulating the miR-1290/HIF3A/HIF-1α axis. The AC16 human myocardial cell line cultured under normoxic or hypoxic conditions was treated with various doses of AA for 24 h. Afterwards cell viability, apoptosis and the expression of miR-1290, HIF3A, and HIF1A were evaluated. Cells transfected with miR-1290 mimic or inhibitor were used to determine the role of miR-1290 in the anti-apoptosis effect of AA and the expression of HIF3A and HIF1A. Dual luciferase assay was performed to confirm miR-1290 targeting of HIF3A. HIF3A overexpression was achieved by transfection of HIF3A1 overexpressing lentivirus, and its effect on miR-1290 and AA-regulated survival of cardiomyocytes was evaluated. AA treatment protected cardiomyocytes from hypoxia-induced apoptosis and upregulated miR-1290 and HIF1A, but downregulated HIF3A under hypoxia. The protective effect of AA was abolished by miR-1290 knockdown, whereas enhanced by miR-1290 overexpression. In addition, miR-1290 knockdown increased HIF1A expression, but reduced HIF3A expression in cardiomyocytes. Dual luciferase assay confirmed miR-1290 direct targeting the 3' UTR of HIF3A. HIF3A overexpression counteracted the anti-apoptosis effect of AA or miR-1290. In conclusion, AA can protect cardiomyocytes against hypoxia-induced apoptosis through regulating the miR-1290/HIF3A/HIF-1α axis, and miR-1290 may be a potential target in the prevention of myocardial ischemia-reperfusion injury. © 2017 IUBMB Life, 69(9):660-667, 2017.


Asunto(s)
Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico/genética , Subunidad alfa del Factor 1 Inducible por Hipoxia/genética , MicroARNs/genética , Daño por Reperfusión/genética , Apoptosis/efectos de los fármacos , Proteínas Reguladoras de la Apoptosis , Hipoxia de la Célula/efectos de los fármacos , Hipoxia de la Célula/genética , Proliferación Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Expresión Génica/efectos de los fármacos , Técnicas de Silenciamiento del Gen , Humanos , Miocitos Cardíacos/efectos de los fármacos , Miocitos Cardíacos/metabolismo , Triterpenos Pentacíclicos/farmacología , Daño por Reperfusión/patología , Proteínas Represoras
8.
Biol Pharm Bull ; 40(8): 1174-1182, 2017 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-28502921

RESUMEN

Mitochondria are the central hubs for cellular bioenergetics and are crucial to cell survival. It is well accepted that compromised mitochondrial function is linked with hepatocytes injury and contribute to progression of liver diseases. Despite the therapeutic potential of mesenchymal stem cells (MSCs) transplantation on hepatic disorders have been extensively investigated, the effects of MSCs on mitochondrial function in liver injury models remain unknown. Here we investigated the effects of treatment with umbilical cord (UC) MSC in a rat model of D-galactose (D-Gal) induced liver injury, characterized by organ damage, oxidative stress and mitochondrial dysfunction. Our results showed that UC-MSCs treatment significantly alleviated histological lesion and attenuated the elevation of liver biochemical markers, demonstrating its protective effects on D-Gal induced hepatic disorders. Mitochondria isolated from the liver of D-Gal models exhibited decreased antioxidant capacity as well as compromised bioenergetics functions, as shown by a loss of mitochondrial membrane potential, elevation of reactive oxygen species (ROS) production, reduction of mitochondrial respiration complexes and ATP decrement. Treatment of rats with UC-MSCs remarkably blunted these changes and rescued mitochondrial efficiency. Mechanistically, we found that the protective potential of UC-MSCs administration was mediated by nuclear factor-E2-related factor 2/heme oxygenase-1 (Nrf2/HO-1) pathway, but not FOXO3a pathway. In conclusion, the attenuating effects of UC-MSCs on hepatic damage partially rely on normalizing mitochondrial function and preventing a state of energetic deficit via activation of Nrf2/HO-1 pathway.


Asunto(s)
Enfermedad Hepática Crónica Inducida por Sustancias y Drogas/terapia , Hemo Oxigenasa (Desciclizante)/metabolismo , Trasplante de Células Madre Mesenquimatosas , Mitocondrias/metabolismo , Factor 2 Relacionado con NF-E2/metabolismo , Cordón Umbilical/citología , Animales , Antioxidantes/metabolismo , Biomarcadores/sangre , Enfermedad Hepática Crónica Inducida por Sustancias y Drogas/sangre , Enfermedad Hepática Crónica Inducida por Sustancias y Drogas/etiología , Modelos Animales de Enfermedad , Proteína Forkhead Box O3/metabolismo , Galactosa/toxicidad , Hepatocitos/efectos de los fármacos , Hepatocitos/metabolismo , Hepatocitos/patología , Humanos , Hígado/efectos de los fármacos , Hígado/metabolismo , Hígado/patología , Masculino , Potencial de la Membrana Mitocondrial/efectos de los fármacos , Mitocondrias/patología , Estrés Oxidativo/efectos de los fármacos , Ratas , Especies Reactivas de Oxígeno/metabolismo , Transducción de Señal
9.
Glia ; 64(5): 668-94, 2016 May.
Artículo en Inglés | MEDLINE | ID: mdl-26683444

RESUMEN

Molecular markers associated with CNS injury are of diagnostic interest. Mechanical trauma generates cellular deformation associated with membrane permeability with unknown molecular consequences. We used an in vitro model of stretch-injury and proteomic analyses to determine protein changes in murine astrocytes and their surrounding fluids. Abrupt pressure-pulse stretching resulted in the rapid release of 59 astrocytic proteins with profiles reflecting cell injury and cell death, i.e., mechanoporation and cell lysis. This acute trauma-release proteome was overrepresented with metabolic proteins compared with the uninjured cellular proteome, bearing relevance for post-traumatic metabolic depression. Astrocyte-specific deletion of signal transducer and activator of transcription 3 (STAT3-CKO) resulted in reduced stretch-injury tolerance, elevated necrosis and increased protein release. Consistent with more lysed cells, more protein complexes, nuclear and transport proteins were released from STAT3-CKO versus nontransgenic astrocytes. STAT3-CKO astrocytes had reduced basal expression of GFAP, lactate dehydrogenase B (LDHB), aldolase C (ALDOC), and astrocytic phosphoprotein 15 (PEA15), and elevated levels of tropomyosin (TPM4) and α actinin 4 (ACTN4). Stretching caused STAT3-dependent cellular depletion of PEA15 and GFAP, and its filament disassembly in subpopulations of injured astrocytes. PEA15 and ALDOC signals were low in injured astrocytes acutely after mouse spinal cord crush injury and were robustly expressed in reactive astrocytes 1 day postinjury. In contrast, α crystallin (CRYAB) was present in acutely injured astrocytes, and absent from uninjured and reactive astrocytes, demonstrating novel marker differences among postinjury astrocytes. These findings reveal a proteomic signature of traumatically-injured astrocytes reflecting STAT3-dependent cellular survival with potential diagnostic value.


Asunto(s)
Astrocitos/metabolismo , Factor de Transcripción STAT3/metabolismo , Traumatismos de la Médula Espinal/patología , Transcriptoma/genética , Animales , Apolipoproteínas E/metabolismo , Células Cultivadas , Corteza Cerebral/citología , Modelos Animales de Enfermedad , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Espectrometría de Masas , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Fragmentos de Péptidos/metabolismo , Proteómica , Factor de Transcripción STAT3/genética , Transducción de Señal/efectos de los fármacos , Transducción de Señal/fisiología , Estrés Mecánico
10.
Zhonghua Nan Ke Xue ; 21(10): 900-3, 2015 Oct.
Artículo en Zh | MEDLINE | ID: mdl-26665678

RESUMEN

OBJECTIVE: To explore the efficacy and safety of prostatic arterial embolization (PAE) in the treatment of benign prostatic hyperplasia ( BPH) in high-risk aged males. METHODS: We retrospectively analyzed the clinical data about 21 high-risk BPH patients aged 77-91 (mean 80) years treated by PAE. RESULTS: PAE was successfully performed in all the 21 patients, with the operation time of 90-120 min. At 2 weeks, 3 months, 6 months, and 12 months after surgery, the International Prostate Symptom Scores (IPSS) were 18.3 ± 3.1, 9.8 ± 2.7, 9.4 ± 2.5, and 10.1 ± 2.2, the quality of life scores ( QOL) were 4.6 ± 1.4, 4.3 ± 1.2, 4.6 ± 1.1, and 4.9 ± 0.6, the maximum urinary flow rates ( Qmax) were (12.5 ± 2.5), (15.8 ± 2.4), (16.6 ± 2.2), and (16.3 ± 1.8) ml/s, and the postvoid residual urine volumes (PVR) were (35.0 ± 3.4), (13.0 ± 3.3), (10.0 ± 3.0), and (8.0 ± 2.5) ml, respectively, markedly improved as compared with the baseline (IPSS: 24.5 ± 3.7, QOL: 5.7 ± 1.6, Qmax: [8.3 ± 2.1] ml/s, and PVR: [98.0 ± 11.0] ml), with statistically significant differences in IPSS, QOL, Qmax, and PVR (all P < 0.05). The maximal velocity of blood flow in the prostate was obviously decreased and the prostate volumes were (74.4 ± 4.8), (42.5 ± 4.4), (38.3 ± 4.0), and (36.7 ± 3.5) cm3 at 2 weeks, 3 months, 6 months, and 12 months, respectively, also significantly reduced in comparison with (84.3 ± 5.4) cm3 preoperatively (all P < 0.05). CONCLUSION: PAE is a safe and effective option for the treatment of BPH in high-risk aged males.


Asunto(s)
Embolización Terapéutica/métodos , Próstata/irrigación sanguínea , Hiperplasia Prostática/terapia , Anciano , Anciano de 80 o más Años , Arterias , Velocidad del Flujo Sanguíneo , Humanos , Masculino , Calidad de Vida , Estudios Retrospectivos , Resultado del Tratamiento , Micción
11.
Plant Cell ; 23(4): 1273-92, 2011 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-21498682

RESUMEN

In this work, we query the Chlamydomonas reinhardtii copper regulon at a whole-genome level. Our RNA-Seq data simulation and analysis pipeline validated a 2-fold cutoff and 10 RPKM (reads per kilobase of mappable length per million mapped reads) (~1 mRNA per cell) to reveal 63 CRR1 targets plus another 86 copper-responsive genes. Proteomic and immunoblot analyses captured 25% of the corresponding proteins, whose abundance was also dependent on copper nutrition, validating transcriptional regulation as a major control mechanism for copper signaling in Chlamydomonas. The impact of copper deficiency on the expression of several O2-dependent enzymes included steps in lipid modification pathways. Quantitative lipid profiles indicated increased polyunsaturation of fatty acids on thylakoid membrane digalactosyldiglycerides, indicating a global impact of copper deficiency on the photosynthetic apparatus. Discovery of a putative plastid copper chaperone and a membrane protease in the thylakoid suggest a mechanism for blocking copper utilization in the chloroplast. We also found an example of copper sparing in the N assimilation pathway: the replacement of copper amine oxidase by a flavin-dependent backup enzyme. Forty percent of the targets are previously uncharacterized proteins, indicating considerable potential for new discovery in the biology of copper.


Asunto(s)
Chlamydomonas/genética , Chlamydomonas/metabolismo , Cobre/metabolismo , Metabolismo/genética , Fenómenos Fisiológicos de la Nutrición/genética , Biología de Sistemas , Procesos Autotróficos/genética , Secuencia de Bases , Cobre/deficiencia , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genes de Plantas/genética , Sitios Genéticos/genética , Procesos Heterotróficos/genética , Datos de Secuencia Molecular , Oxidación-Reducción , Proteínas de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Regiones Promotoras Genéticas/genética , Estructura Terciaria de Proteína , Proteoma/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN de Planta/genética , ARN de Planta/metabolismo , Reproducibilidad de los Resultados , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
12.
J Clin Neurol ; 20(2): 194-200, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38171500

RESUMEN

BACKGROUND AND PURPOSE: Performing the differential diagnosis of Parkinson's disease (PD) and multiple-system atrophy of parkinsonian type (MSA-P) is challenging. The oculomotor performances of patients with PD and MSA-P were investigated to explore their potential role as a biomarker for this differentiation. METHODS: Reflexive saccades and smooth pursuit were examined in 56 patients with PD and 34 with MSA-P in the off-medication state. RESULTS: Patients with PD and MSA-P had similar oculomotor abnormalities of prolonged and hypometric reflexive saccades. The incidence rates of decreased reflexive saccadic velocity and saccadic smooth pursuit were significantly higher in MSA-P than in PD (p<0.05 for both). Multiple logistic regression analysis indicated that slowed reflexive saccades (odds ratio [OR]=8.14, 95% confidence interval [CI]=1.45-45.5) and saccadic smooth pursuit (OR=5.27, 95% CI=1.24-22.43) were significantly related to MSA-P. CONCLUSIONS: The distinctive oculomotor abnormalities of saccadic smooth pursuit and slowed reflexive saccades in MSA-P may serve as useful biomarkers for discriminating MSA-P from PD.

13.
Mol Genet Metab Rep ; 39: 101075, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38571878

RESUMEN

This case report describes a patient initially diagnosed with Gaucher disease (GD) with type I with homozygous mutation c.1448T > C p. (Leu483Pro) at age of 2, presenting with hepatosplenomegaly and cytopenia. Imiglucerase replacement therapy was initiated. At age 17, bilateral hearing loss developed, with subsequent Cranial MRI revealing thalamic damage, leading to a reclassification as type 3 GD. By age of 20, the patient presented with a range of symptoms, including abdominal pain, diarrhea, hypoproteinemia, multiple lymphadenopathy, edema, and Gaucher cell infiltration in the lymph nodes. Comprehensive diagnosis identifies Gaucher tumor and protein-losing enteropathy. Imiglucerase therapy at 90-120 U/kg every 2 weeks significantly improved clinical symptoms, emphasizing the importance of tailored interventions for managing GD manifestations.

14.
Front Cell Dev Biol ; 12: 1426395, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38983786

RESUMEN

Cerebrospinal fluid-contacting neurons (CSF-cNs) represent a distinct group of interneurons characterized by their prominent apical globular protrusions penetrating the spinal cord's central canal and their basal axons extending towards adjacent cells. Identified nearly a century back, the specific roles and attributes of CSF-cNs have just started to emerge due to the historical lack of definitive markers. Recent findings have confirmed that CSF-cNs expressing PKD2L1 possess attributes of neural stem cells, suggesting a critical function in the regeneration processes following spinal cord injuries. This review aims to elucidate the molecular markers of CSF-cNs as potential neural stem cells during spinal cord development and assess their roles post-spinal cord injury, with an emphasis on their potential therapeutic implications for spinal cord repair.

15.
Cancer Res Commun ; 4(3): 706-722, 2024 03 08.
Artículo en Inglés | MEDLINE | ID: mdl-38421310

RESUMEN

Gigaxonin is an E3 ubiquitin ligase that plays a role in cytoskeletal stability. Its role in cancer is not yet clearly understood. Our previous studies of head and neck cancer had identified gigaxonin interacting with p16 for NFκB ubiquitination. To explore its role in cancer cell growth suppression, we analyzed normal and tumor DNA from cervical and head and neck cancers. There was a higher frequency of exon 8 SNP (c.1293 C>T, rs2608555) in the tumor (46% vs. 25% normal, P = 0.011) pointing to a relationship to cancer. Comparison of primary tumor with recurrence and metastasis did not reveal a statistical significance. Two cervical cancer cell lines, ME180 and HT3 harboring exon 8 SNP and showing T allele expression correlated with higher gigaxonin expression, reduced in vitro cell growth and enhanced cisplatin sensitivity in comparison with C allele expressing cancer cell lines. Loss of gigaxonin expression in ME180 cells through CRISPR-Cas9 or siRNA led to aggressive cancer cell growth including increased migration and Matrigel invasion. The in vitro cell growth phenotypes were reversed with re-expression of gigaxonin. Suppression of cell growth correlated with reduced Snail and increased e-cadherin expression. Mouse tail vein injection studies showed increased lung metastasis of cells with low gigaxonin expression and reduced metastasis with reexpression of gigaxonin. We have found an association between C allele expression and RNA instability and absence of multimeric protein formation. From our results, we conclude that gigaxonin expression is associated with suppression of epithelial-mesenchymal transition through inhibition of Snail. SIGNIFICANCE: Our results suggest that GAN gene exon 8 SNP T allele expression correlates with higher gigaxonin expression and suppression of aggressive cancer cell growth. There is downregulation of Snail and upregulation of e-cadherin through NFκB ubiquitination. We hypothesize that exon 8 T allele and gigaxonin expression could serve as diagnostic markers of suppression of aggressive growth of head and neck cancer.


Asunto(s)
Neoplasias de Cabeza y Cuello , Humanos , Animales , Ratones , Regulación hacia Abajo/genética , Línea Celular Tumoral , Neoplasias de Cabeza y Cuello/tratamiento farmacológico , Transición Epitelial-Mesenquimal/genética , Cadherinas/genética
16.
BMC Genomics ; 14: 774, 2013 Nov 10.
Artículo en Inglés | MEDLINE | ID: mdl-24206606

RESUMEN

BACKGROUND: DNA methylation is an important epigenetic modification involved in many biological processes. Bisulfite treatment coupled with high-throughput sequencing provides an effective approach for studying genome-wide DNA methylation at base resolution. Libraries such as whole genome bisulfite sequencing (WGBS) and reduced represented bisulfite sequencing (RRBS) are widely used for generating DNA methylomes, demanding efficient and versatile tools for aligning bisulfite sequencing data. RESULTS: We have developed BS-Seeker2, an updated version of BS Seeker, as a full pipeline for mapping bisulfite sequencing data and generating DNA methylomes. BS-Seeker2 improves mappability over existing aligners by using local alignment. It can also map reads from RRBS library by building special indexes with improved efficiency and accuracy. Moreover, BS-Seeker2 provides additional function for filtering out reads with incomplete bisulfite conversion, which is useful in minimizing the overestimation of DNA methylation levels. We also defined CGmap and ATCGmap file formats for full representations of DNA methylomes, as part of the outputs of BS-Seeker2 pipeline together with BAM and WIG files. CONCLUSIONS: Our evaluations on the performance show that BS-Seeker2 works efficiently and accurately for both WGBS data and RRBS data. BS-Seeker2 is freely available at http://pellegrini.mcdb.ucla.edu/BS_Seeker2/ and the Galaxy server.


Asunto(s)
Metilación de ADN/genética , Secuenciación de Nucleótidos de Alto Rendimiento/métodos , Análisis de Secuencia de ADN/métodos , Programas Informáticos , Islas de CpG/genética , Genoma Humano , Humanos , Alineación de Secuencia , Sulfitos/química
17.
J Foot Ankle Surg ; 52(2): 143-6, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23321288

RESUMEN

Achilles tendon rupture is a common injury, and its complications can impair function. Numerous operations have been described for reconstructing the ruptured tendon, but these methods can compromise the microcirculation in the tendon and can seriously damage healing of the tendon. Suturing with a minimally invasive tenocutaneous technique soon after the rupture and systematic functional exercise can greatly reduce the possibility of complications. From June 1996 to February 2007, we treated 20 patients (14 males), who ranged in age from 21 to 66 years old, with this method. After follow-up period of 1 to 7 years, the mean American Orthopedic Foot and Ankle Society Ankle Hindfoot score was 95 (range 90 to 98), and the maximum length of postoperative scarring was 3 cm. One patient again ruptured his Achilles tendon 1 year after surgery in an accident; however, after 10 months, the repaired tendon was still intact. In another patient, the nervus suralis was damaged during surgery by piercing the tension suture at the near end, causing postoperative numbness and swelling. The tension suture was quickly removed, and the patient recovered well with conservative treatment. No large irregular scars, such as those sustained during immobilization, were present over the Achilles tendon. Minimally invasive percutaneous suturing can restore the original length and continuity of the Achilles tendon, is minimally invasive, and results in fewer postoperative complications than other methods.


Asunto(s)
Tendón Calcáneo/lesiones , Tendón Calcáneo/cirugía , Técnicas de Sutura , Adulto , Anciano , Moldes Quirúrgicos , Femenino , Estudios de Seguimiento , Humanos , Imagen por Resonancia Magnética , Masculino , Persona de Mediana Edad , Complicaciones Posoperatorias , Rotura/cirugía , Adulto Joven
18.
ACS Appl Mater Interfaces ; 15(51): 59432-59443, 2023 Dec 27.
Artículo en Inglés | MEDLINE | ID: mdl-38108306

RESUMEN

Acidic oxygen evolution reaction (OER) remains a significant challenge due to the low activity and/or poor stability of the catalysts, even with state-of-the-art catalysts such as IrO2 and RuO2. Herein, we propose a strategy to enhance both the catalytic activity and stability of IrRu oxides for acidic OER by doping non-noble metal W. The W-doped IrRu3Ox (W-IrRu3Ox) undergoes a process of W leaching and reconstruction during the OER, leading to a more uniform distribution of elements, while the electronegative nature of W influences the electronic structures of Ir and Ru in W-IrRu3Ox. The dual role of W in promoting the formation of active site Ir5+ and inhibiting the concentration of soluble Ru>4+ ions results in a synergistic enhancement of both the activity and stability of acidic OER. Remarkably, W-IrRu3Ox exhibits outstanding catalytic activity for the OER in 0.5 M H2SO4, with a high stability of more than 500 h. This work presents a novel and feasible strategy for the development of efficient and stable catalysts for acid OER, shedding light on the design of advanced electrocatalysts for energy conversion and storage applications.

19.
J Bone Miner Metab ; 30(4): 400-7, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22065237

RESUMEN

In the present study, we examined intraosseous blood vessel parameters of the tibial metaphysis in mice using microcomputed tomography (µCT) to investigate the relationship between post-nerve-injury osteoporosis and local intraosseous blood vessel volume and number. Mice were randomly divided into groups receiving spinal cord injury (SCI), sciatic nerve resection group (NX), or intact controls (30 mice/group). Four weeks after surgery, mice were perfused with silicone and the distribution of intraosseous blood vessels analyzed by µCT. The bone density, µCT microstructure, biomechanical properties, and the immunohistochemical and biochemical indicators of angiogenesis were also measured. The SCI group showed significantly reduced tibial metaphysis bone density, µCT bone microstructure, tibial biomechanical properties, indicators of angiogenesis, and intraosseous blood vessel parameters compared to the NX group. Furthermore, the spinal cord-injured mice exhibited significantly decreased intraosseous blood vessel volume and number during the development of osteoporosis. In conclusion, these data suggest that decreased intraosseous blood vessel volume and number may play an important role in the development of post-nerve-injury osteoporosis.


Asunto(s)
Huesos/irrigación sanguínea , Modelos Animales de Enfermedad , Neovascularización Patológica/patología , Osteoporosis/patología , Nervio Ciático/lesiones , Traumatismos de la Médula Espinal/fisiopatología , Animales , Densidad Ósea , Huesos/diagnóstico por imagen , Huesos/patología , Epífisis/irrigación sanguínea , Epífisis/diagnóstico por imagen , Epífisis/patología , Factor VIII/metabolismo , Imagenología Tridimensional , Masculino , Ratones , Ratones Endogámicos C57BL , Microvasos/diagnóstico por imagen , Microvasos/patología , Neovascularización Patológica/diagnóstico por imagen , Neovascularización Patológica/etiología , Osteoporosis/diagnóstico por imagen , Osteoporosis/etiología , Osteoporosis/fisiopatología , Molécula-1 de Adhesión Celular Endotelial de Plaqueta/metabolismo , Distribución Aleatoria , Tibia/irrigación sanguínea , Tibia/diagnóstico por imagen , Tibia/patología , Factor A de Crecimiento Endotelial Vascular/metabolismo , Microtomografía por Rayos X
20.
Sci Rep ; 12(1): 9017, 2022 05 30.
Artículo en Inglés | MEDLINE | ID: mdl-35637264

RESUMEN

Grass community classification is the basis for the development of animal husbandry and dynamic monitoring of environment, which has become a critical problem to further strengthen the intelligent management of grassland. Compared with grass survey based on satellite remote sensing, the visible near infrared (NIR) hyperspectral not only monitor dynamically in a short distance, but also have high dimensions and detailed spectral information in each pixel. However, the hyperspectral labeled sample for classification is expensive and manual selection is more subjective. In order to solve above limitations, we proposed a visible-NIR hyperspectral classification model for grass based on multivariate smooth mapping and extreme active learning (MSM-EAL). Firstly, MSM is used to preprocess and reconstruct the spectrum. Secondly, by jointing XGBoost and active learning (AL), the advanced samples with the largest amount of information are actively selected to improve the performance of target classification. Innovation lies in: (1) MSM global enhanced preprocessing spectral reconstruction algorithm is proposed, in which isometric feature mapping is effectively applied to the grass hyperspectral for the first time. (2) EAL framework is constructed to solve the issue of high cost and small number for hyperspectral labeled samples, at the same time, enhance the physical essence behind spectral classification more intuitively. A field hyperspectral collection platform is assembled to establish nm resolution visible-NIR hyperspectral dataset of grass, Grass1, containing 750 samples, which to verify the effectiveness of the model. Experiments on the Grass1 dataset confirmed that compared with the full spectrum, the time consumption of MSM was reduced by 9.471 s with guaranteed overall accuracy (OA). Comparing EAL with AL, and other classification algorithms, EAL improves OA 22.2% over AL, and XAL has the best performance value on Kappa, Macro, Recall and F1-score, respectively. Altogether, the lightweight MSM-EAL model realizes intelligent and real-time classification, providing a new method for obtaining high-precision inter group classification of grass.


Asunto(s)
Algoritmos , Poaceae
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