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1.
Yi Chuan ; 46(4): 333-345, 2024 Apr 20.
Artículo en Inglés | MEDLINE | ID: mdl-38632095

RESUMEN

China has a high dependence on soybean imports, yield increase at a faster rate is an urgent problem that need to be solved at present. The application of heterosis is one of the effective ways to significantly increase crop yield. In recent years, the development of an intelligent male sterility system based on recessive nuclear sterile genes has provided a potential solution for rapidly harnessing the heterosis in soybean. However, research on male sterility genes in soybean has been lagged behind. Based on transcriptome data of soybean floral organs in our research group, a soybean stamen-preferentially expressed gene GmFLA22a was identified. It encodes a fasciclin-like arabinogalactan protein with the FAS1 domain, and subcellular localization studies revealed that it may play roles in the endoplasmic reticulum. Take advantage of the gene editing technology, the Gmfla22a mutant was generated in this study. However, there was a significant reduction in the seed-setting rate in the mutant plants at the reproductive growth stage. The pollen viability and germination rate of Gmfla22a mutant plants showed no apparent abnormalities. Histological staining demonstrated that the release of pollen grains in the mutant plants was delayed and incomplete, which may due to the locule wall thickening in the anther development. This could be the reason of the reduced seed-setting rate in Gmfla22a mutants. In summary, our study has preliminarily revealed that GmFLA22a may be involved in regulating soybean male fertility. It provides crucial genetic materials for further uncovering its molecular function and gene resources and theoretical basis for the utilization of heterosis in soybean.


Asunto(s)
Glycine max , Infertilidad Masculina , Masculino , Humanos , Plantas , Polen/genética , Fertilidad , Infertilidad Vegetal/genética , Regulación de la Expresión Génica de las Plantas
2.
Molecules ; 28(6)2023 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-36985477

RESUMEN

Tetrabromobisphenol A (TBBPA) is a known endocrine disruptor employed in a range of consumer products and has been predominantly found in different environments through industrial processes and in human samples. In this review, we aimed to summarize published scientific evidence on human biomonitoring, toxic effects and mode of action of TBBPA in humans. Interestingly, an overview of various pretreatment methods, emerging detection methods, and treatment methods was elucidated. Studies on exposure routes in humans, a combination of detection methods, adsorbent-based treatments and degradation of TBBPA are in the preliminary phase and have several limitations. Therefore, in-depth studies on these subjects should be considered to enhance the accurate body load of non-invasive matrix, external exposure levels, optimal design of combined detection techniques, and degrading technology of TBBPA. Overall, this review will improve the scientific comprehension of TBBPA in humans as well as the environment, and the breakthrough for treating waste products containing TBBPA.


Asunto(s)
Retardadores de Llama , Bifenilos Polibrominados , Humanos , Monitoreo Biológico , Retardadores de Llama/análisis , Bifenilos Polibrominados/toxicidad , Bifenilos Polibrominados/análisis
3.
Int J Biometeorol ; 64(8): 1343-1354, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32303899

RESUMEN

Spring greening has been widely observed across the Northern Hemisphere (NH) using a remotely sensed vegetation index (e.g., the normalized difference vegetation index, NDVI). However, there is still a debate on the ecological effects of spring greening on seasonal carbon and water budgets. This study jointly investigated the concurrent and lagged effects of spring greening on carbon gain (gross primary productivity, GPP) and water loss (evapotranspiration, ET) in the summer-active ecosystems at mid and high latitudes of NH using remote sensing and multimodel ensemble data during 1982-2013. The results showed that the collective promotion of spring greening to concurrent GPP and ET is widespread despite variations in magnitude and significance. Both beneficial and adverse lagged effects of spring greening on summer GPP commonly appear with an obvious spatial heterogeneity and difference among climate-plant types. However, the expected significant suppression of spring greening to summer GPP was rarely observed even in the areas where spring ET was significantly promoted by spring greening. Nevertheless, when drought was taken into account, the response patterns of spring water use to spring greening varied to some extent, and the adverse lagged effect of spring greening to summer GPP appeared or strengthened in some regions, especially during the years with dry summer. Given the predicted warming of the climate and more frequent climatic extremes, the adverse effect of spring greening should be given more attention.


Asunto(s)
Carbono , Agua , Ciclo del Carbono , Ecosistema , Estaciones del Año
4.
Appl Opt ; 57(12): 3065-3071, 2018 Apr 20.
Artículo en Inglés | MEDLINE | ID: mdl-29714338

RESUMEN

In order to improve accuracy of aerosol measurements, a novel method using twin scanning lidars is presented; this method is able to overcome the incomplete overlap range of vertical lidar as well as provide 2D spatial distributions. The scanning lidar setups in the opposite directions are employed as remote sensing tools. Aerosol measurements are performed with cross scanning from the ground to the height of interest. Aerosol optical properties are retrieved using numerical approximation, in which differences between the measured values and the constructed values of the logarithmic range-square-corrected lidar data in the cross-scanning region are minimized. In the data retrieval, we utilize a matrix formulation, in which a Cartesian 2D range-height-indicator diagram is constructed. To verify this method, scanning measurements by ultraviolet Mie scanning lidar performed at different time intervals were taken as the cross-scanning measurements from the twin scanning lidars. With the retrieved spatial distributions of aerosol optical properties, such as aerosol backscatter, aerosol extinction, and lidar ratio, the regional aerosol studies showed that aerosol loading was relatively small and in the presence of multiple layers, which may be influenced by airflow from long-range transportation and cause a large impact on the local environment. To conclude, the presented method using twin scanning lidars is feasible for aerosol measurement in the application of horizontally atmospheric inhomogeneity.

5.
Ultrason Imaging ; 39(4): 240-259, 2017 07.
Artículo en Inglés | MEDLINE | ID: mdl-28627330

RESUMEN

Volume reconstruction method plays an important role in improving reconstructed volumetric image quality for freehand three-dimensional (3D) ultrasound imaging. By utilizing the capability of programmable graphics processing unit (GPU), we can achieve a real-time incremental volume reconstruction at a speed of 25-50 frames per second (fps). After incremental reconstruction and visualization, hole-filling is performed on GPU to fill remaining empty voxels. However, traditional pixel nearest neighbor-based hole-filling fails to reconstruct volume with high image quality. On the contrary, the kernel regression provides an accurate volume reconstruction method for 3D ultrasound imaging but with the cost of heavy computational complexity. In this paper, a GPU-based fast kernel regression method is proposed for high-quality volume after the incremental reconstruction of freehand ultrasound. The experimental results show that improved image quality for speckle reduction and details preservation can be obtained with the parameter setting of kernel window size of [Formula: see text] and kernel bandwidth of 1.0. The computational performance of the proposed GPU-based method can be over 200 times faster than that on central processing unit (CPU), and the volume with size of 50 million voxels in our experiment can be reconstructed within 10 seconds.


Asunto(s)
Gráficos por Computador , Procesamiento de Imagen Asistido por Computador/métodos , Imagenología Tridimensional/métodos , Ultrasonografía/métodos , Algoritmos , Humanos , Hígado/diagnóstico por imagen , Fantasmas de Imagen
6.
Biomed Eng Online ; 13: 51, 2014 Apr 27.
Artículo en Inglés | MEDLINE | ID: mdl-24767578

RESUMEN

BACKGROUND: In a deforming anatomic environment, the motion of an instrument suffers from complex geometrical and dynamic constraints, robot assisted minimally invasive surgery therefore requires more sophisticated skills for surgeons. This paper proposes a novel dynamic virtual fixture (DVF) to enhance the surgical operation accuracy of admittance-type medical robotics in the deforming environment. METHODS: A framework for DVF on the Euclidean Group SE(3) is presented, which unites rotation and translation in a compact form. First, we constructed the holonomic/non-holonomic constraints, and then searched for the corresponded reference to make a distinction between preferred and non-preferred directions. Second, different control strategies are employed to deal with the tasks along the distinguished directions. The desired spatial compliance matrix is synthesized from an allowable motion screw set to filter out the task unrelated components from manual input, the operator has complete control over the preferred directions; while the relative motion between the surgical instrument and the anatomy structures is actively tracked and cancelled, the deviation relative to the reference is compensated jointly by the operator and DVF controllers. The operator, haptic device, admittance-type proxy and virtual deforming environment are involved in a hardware-in-the-loop experiment, human-robot cooperation with the assistance of DVF controller is carried out on a deforming sphere to simulate beating heart surgery, performance of the proposed DVF on admittance-type proxy is evaluated, and both human factors and control parameters are analyzed. RESULTS: The DVF can improve the dynamic properties of human-robot cooperation in a low-frequency (0 ~ 40 rad/sec) deforming environment, and maintain synergy of orientation and translation during the operation. Statistical analysis reveals that the operator has intuitive control over the preferred directions, human and the DVF controller jointly control the motion along the non-preferred directions, the target deformation is tracked actively. CONCLUSIONS: The proposed DVF for an admittance-type manipulator is capable of assisting the operator to deal with skilled operations in a deforming environment.


Asunto(s)
Movimiento (Física) , Cirugía Asistida por Computador/métodos , Conducta Cooperativa , Retroalimentación , Humanos , Procedimientos Quirúrgicos Mínimamente Invasivos , Robótica
7.
Genes (Basel) ; 15(5)2024 05 10.
Artículo en Inglés | MEDLINE | ID: mdl-38790237

RESUMEN

Haworthia cooperi var. pilifera is a succulent plant with ornamental value. The white-green leaf mutant (wl) showed a significant difference in leaf color from the wild-type plant (WT). In this study, we integrated the transcriptomes of wl and WT plants to screen differentially expressed genes related to leaf color variation. The results of transcriptome analysis showed that 84,163 unigenes were obtained after de novo assembly and the NR database annotated the largest number of unigenes, which accounted for 57.13%, followed by NT (43.02%), GO (39.84%), Swiss-Prot (39.25%), KEGG (36.06%), and COG (24.88%). Our finding showed that 2586 genes were differentially expressed in the two samples, including 1996 down-regulated genes and 590 up-regulated genes. GO analysis predicted that these differentially expressed genes (DEGs) participate in 12 cellular components, 20 biological processes, and 13 molecular function terms and KEGG analysis showed that metabolic pathways, plant-pathogen interaction, glycerophospholipid metabolism, endocytosis, plant hormone signal transduction, and ether lipid metabolism were enriched among all identified pathways. Through functional enrichment analysis of DEGs, we found that they were involved in chloroplast division and the biosynthesis of plant pigments, including chlorophyll, carotenoids, anthocyanin, and transcription factor families, which might be related to the formation mechanism of leaf color. Taken together, these results present insights into the difference in gene expression characteristics in leaves between WT and wl mutants and provide a new insight for breeding colorful leaf phenotypes in succulent plants.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Mutación , Hojas de la Planta , Transcriptoma , Hojas de la Planta/genética , Perfilación de la Expresión Génica , Pigmentación/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
8.
Biomed Eng Online ; 12: 101, 2013 Oct 10.
Artículo en Inglés | MEDLINE | ID: mdl-24112763

RESUMEN

BACKGROUND: Motion characteristics of CoP (Centre of Pressure, the point of application of the resultant ground reaction force acting on the plate) are useful for foot type characteristics detection. To date, only few studies have investigated the nonlinear characteristics of CoP velocity and acceleration during the stance phase. The aim of this study is to investigate whether CoP regularity is different among four foot types (normal foot, pes valgus, hallux valgus and pes cavus); this might be useful for classification and diagnosis of foot injuries and diseases. To meet this goal, sample entropy, a measure of time-series regularity, was used to quantify the CoP regularity of four foot types. METHODS: One hundred and sixty five subjects that had the same foot type bilaterally (48 subjects with healthy feet, 22 with pes valgus, 47 with hallux valgus, and 48 with pes cavus) were recruited for this study. A Footscan® system was used to collect CoP data when each subject walked at normal and steady speed. The velocity and acceleration in medial-lateral (ML) and anterior-posterior (AP) directions, and resultant velocity and acceleration were derived from CoP. The sample entropy is the negative natural logarithm of the conditional probability that a subseries of length m that matches pointwise within a tolerance r also matches at the next point. This was used to quantify variables of CoP velocity and acceleration of four foot types. The parameters r (the tolerance) and m (the matching length) for sample entropy calculation have been determined by an optimal method. RESULTS: It has been found that in order to analyze all CoP parameters of velocity and acceleration during the stance phase of walking gait, for each variable there is a different optimal r value. On the contrary, the value m=4 is optimal for all variables.Sample entropies of both velocity and acceleration in AP direction were highly correlated with their corresponding resultant variables for r>0.91. The sample entropy of the velocity in AP direction was moderately correlated with the one of the acceleration in the same direction (r≥0.673), as well as with the resultant acceleration (r≥0.660). The sample entropy of resultant velocity was moderately correlated with the one of the acceleration in AP direction, as well as with the resultant acceleration (for the both r≥0.689). Moderate correlations were found between variables for the left foot and their corresponding variables for the right foot.Sample entropies of AP velocity, resultant velocity, AP acceleration, and resultant acceleration of the right foot as well as AP velocity and resultant velocity of the left foot were, respectively, significantly different among the four foot types. CONCLUSIONS: It can be concluded that the sample entropy of AP velocity (or the resultant velocity) of the left foot, ML velocity, resultant velocity, ML acceleration and resultant acceleration could serve for evaluation of foot types or selection of appropriate footwear.


Asunto(s)
Entropía , Pie/fisiología , Pie/fisiopatología , Movimiento , Postura , Presión , Aceleración , Adulto , Femenino , Deformidades del Pie/fisiopatología , Hallux Valgus/fisiopatología , Humanos , Masculino
9.
Nat Prod Res ; : 1-8, 2023 Sep 26.
Artículo en Inglés | MEDLINE | ID: mdl-37752790

RESUMEN

Phytochemical investigation of Chrysanthemum indicum L. yielded two new quinolinone glycoalkaloids named as Chrysanthemumsides A-B (1-2). The structures of the new compounds were elucidated by analysis of their 1D- and 2D-NMR, HRESIMS and ECD calculations. Compounds 1-4 were evaluated for antimicrobial activity against the Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa and Candida albicans, and the data showed that compound 2 had significant antimicrobial effects (MIC 3.9 to 7.8 µg/mL).

10.
Front Immunol ; 14: 1193977, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37251394

RESUMEN

Background: Although zebrafish are commonly used to study intestinal mucosal immunity, no dedicated procedure for isolating immune cells from zebrafish intestines is currently available. A speedy and simple operating approach for preparing cell suspension from mucosa has been devised to better understanding of intestinal cellular immunity in zebrafish. Methods and results: The mucosal villi were separated away from the muscle layer by repeated blows. The complete deprivation of mucosa was done and evidenced by HE and qPCR results. Higher expression of both innate (mpeg1, mpx, and lck) and adaptive immune genes (zap70, blnk, foxp3a, and foxp3b) was revealed compared to cells obtained by typical mesh rubbing. The cytometric results also revealed that the tested operation group had a higher concentration and viability. Further, fluorescent-labelled immune cells from 3mo Tg(lyz:DsRED2), Tg(mpeg1:EGFP), Tg(Rag2:DsRED), and Tg(lck:EGFP), were isolated and evaluated for the proportion, and immune cells' type could be inferred from the expression of marker genes. The transcriptomic data demonstrated that the intestinal immune cell suspension made using the new technique was enriched in immune-related genes and pathways, including il17a/f, il22, cd59, and zap70, as well as pattern recognition receptor signaling and cytokine-cytokine receptor interaction. In addition, the low expression of DEG for the adherent and close junctions indicated less muscular contamination. Also, lower expression of gel-forming mucus-associated genes in the mucosal cell suspension was consistent with the current less viscous cell suspension. To apply and validate the developed manipulation, enteritis was induced by soybean meal diet, and immune cell suspensions were analyzed by flow cytometry and qPCR. The finding that in enteritis samples, there was inflammatory increase of neutrophils and macrophages, was in line with upregulated cytokines (il8 and il10) and cell markers (mpeg1 and mpx). Conclusion: As a result, the current work created a realistic technique for studying intestinal immune cells in zebrafish. The immune cells acquired may aid in further research and knowledge of intestinal illness at the cellular level.


Asunto(s)
Enteritis , Pez Cebra , Animales , Enteritis/inducido químicamente , Mucosa Intestinal , Intestinos , Citocinas/metabolismo
11.
Breast Cancer Res Treat ; 136(1): 57-66, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22976807

RESUMEN

Our previous studies demonstrated that specific polyamine analogues, oligoamines, down-regulated the activity of a key polyamine biosynthesis enzyme, ornithine decarboxylase (ODC), and suppressed expression of estrogen receptor alpha (ERα) in human breast cancer cells. However, the mechanism underlying the potential regulation of ERα expression by polyamine metabolism has not been explored. Here, we demonstrated that RNAi-mediated knockdown of ODC (ODC KD) down-regulated the polyamine pool, and hindered growth in ERα-positive MCF7 and T47D and ERα-negative MDA-MB-231 breast cancer cells. ODC KD significantly induced the expression and activity of the key polyamine catabolism enzymes, spermine oxidase (SMO) and spermidine/spermine N (1)-acetyltransferase (SSAT). However, ODC KD-induced growth inhibition could not be reversed by exogenous spermidine or overexpression of antizyme inhibitor (AZI), suggesting that regulation of ODC on cell proliferation may involve the signaling pathways independent of polyamine metabolism. In MCF7 and T47D cells, ODC KD, but not DFMO treatment, diminished the mRNA and protein expression of ERα. Overexpression of antizyme (AZ), an ODC inhibitory protein, suppressed ERα expression, suggesting that ODC plays an important role in regulation of ERα expression. Decrease of ERα expression by ODC siRNA altered the mRNA expression of a subset of ERα response genes. Our previous analysis showed that oligoamines disrupt the binding of Sp1 family members to an ERα minimal promoter element containing GC/CA-rich boxes. By using DNA affinity precipitation and mass spectrometry analysis, we identified ZBTB7A, MeCP2, PARP-1, AP2, and MAZ as co-factors of Sp1 family members that are associated with the ERα minimal promoter element. Taken together, these data provide insight into a novel antiestrogenic mechanism for polyamine biosynthesis enzymes in breast cancer.


Asunto(s)
Neoplasias de la Mama , Receptor alfa de Estrógeno/metabolismo , Ornitina Descarboxilasa/metabolismo , Espermidina , Espermina , Acetiltransferasas/metabolismo , Neoplasias de la Mama/enzimología , Neoplasias de la Mama/metabolismo , Neoplasias de la Mama/patología , Proliferación Celular , Femenino , Regulación Neoplásica de la Expresión Génica , Humanos , Células MCF-7 , Inhibidores de la Ornitina Descarboxilasa , Oxidorreductasas actuantes sobre Donantes de Grupo CH-NH/metabolismo , Proteínas/metabolismo , Transducción de Señal , Espermidina/biosíntesis , Espermidina/metabolismo , Espermina/biosíntesis , Espermina/metabolismo , Poliamino Oxidasa
12.
Amino Acids ; 42(2-3): 887-98, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21805138

RESUMEN

Aberrant epigenetic repression of gene expression has been implicated in most cancers, including breast cancer. The nuclear amine oxidase, lysine-specific demethylase 1 (LSD1) has the ability to broadly repress gene expression by removing the activating mono- and di-methylation marks at the lysine 4 residue of histone 3 (H3K4me1 and me2). Additionally, LSD1 is highly expressed in estrogen receptor α negative (ER-) breast cancer cells. Since epigenetic marks are reversible, they make attractive therapeutic targets. Here we examine the effects of polyamine analog inhibitors of LSD1 on gene expression, with the goal of targeting LSD1 as a therapeutic modality in the treatment of breast cancer. Exposure of the ER-negative human breast cancer cells, MDA-MB-231 to the LSD1 inhibitors, 2d or PG11144, significantly increases global H3K4me1 and H3K4me2, and alters gene expression. Array analysis indicated that 98 (75 up and 23 down) and 477 (237 up and 240 down) genes changed expression by at least 1.5-fold or greater after treatment with 2d and PG11144, respectively. The expression of 12 up-regulated genes by 2d and 14 up-regulated genes by PG11144 was validated by quantitative RT-PCR. Quantitative chromatin immunoprecipitation (ChIP) analysis demonstrated that up-regulated gene expression by polyamine analogs is associated with increase of the active histone marks H3K4me1, H3K4me2 and H3K9act, and decrease of the repressive histone marks H3K9me2 and H3K27me3, in the promoter regions of the relevant target genes. These data indicate that the pharmacologic inhibition of LSD1 can effectively alter gene expression and that this therapeutic strategy has potential.


Asunto(s)
Neoplasias de la Mama/patología , Cromatina/metabolismo , Regulación Neoplásica de la Expresión Génica/efectos de los fármacos , Histona Demetilasas/antagonistas & inhibidores , Poliaminas/farmacología , Secuencia de Bases , Neoplasias de la Mama/enzimología , Neoplasias de la Mama/metabolismo , Línea Celular Tumoral , Cartilla de ADN , Femenino , Perfilación de la Expresión Génica , Humanos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
13.
ScientificWorldJournal ; 2012: 913693, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22566782

RESUMEN

A novel deformable registration algorithm is proposed in the application of radiation therapy. The algorithm starts with autodetection of a number of points with distinct tissue features. The feature points are then matched by using the scale invariance features transform (SIFT) method. The associated feature point pairs are served as landmarks for the subsequent thin plate spline (TPS) interpolation. Several registration experiments using both digital phantom and clinical data demonstrate the accuracy and efficiency of the method. For the 3D phantom case, markers with error less than 2 mm are over 85% of total test markers, and it takes only 2-3 minutes for 3D feature points association. The proposed method provides a clinically practical solution and should be valuable for various image-guided radiation therapy (IGRT) applications.


Asunto(s)
Algoritmos , Interpretación de Imagen Radiográfica Asistida por Computador/métodos , Programas Informáticos , Torso/diagnóstico por imagen , Tomografía Computarizada Cuatridimensional/métodos , Humanos , Procesamiento de Imagen Asistido por Computador/métodos , Imagenología Tridimensional/métodos , Fantasmas de Imagen , Planificación de la Radioterapia Asistida por Computador/métodos , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Técnica de Sustracción , Factores de Tiempo
14.
Mitochondrial DNA B Resour ; 7(7): 1234-1236, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35837500

RESUMEN

Rhododendron oreodoxa var. fargesii is an evergreen shrub or small tree, which has great ornamental and huge medicinal value. The complete chloroplast genome of this species has not been reported. In the present study, we obtained the chloroplast complete genome, the circular genome was 200,787 bp in total length, and 141 genes were identified, including 93 protein-coding, 40 tRNA genes, and 8 rRNA genes. The results of the phylogenetic analysis supported the idea that Rhododendron belongs to the Ericaceae family and that R. oreodoxa var. fargesii is closely related to R. griersonianum in the Ericaceae family. This study will provide useful data onto phylogeny research and genomic selective breeding of R. oreodoxa var. fargesii.

15.
Mitochondrial DNA B Resour ; 7(3): 471-473, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35295912

RESUMEN

Clematis florida Thunb. is a herbaceous and perennial plant native to East Asia. The plant is resistant to cold but sensitive to heat. It is an ornamental and medicinal plant that has great commercial potential. Here, we assembled and characterized the complete chloroplast (cp) genome of C. florida. The cp genome of C. florida was characterized by Illumina pair-end sequencing and is 159,606 bp in total length. The genome includes a large single-copy (LSC) region of 79,467 bp, a small single-copy (SSC) region of 18,057 bp, and a pair of inverted repeats (IR) regions of 31,041 bp. The genome contains 135 genes including 91 protein-coding, 36 tRNA, and eight rRNA genes. Phylogenetic analysis based on 18 Clematis species indicates that C. florida is closely related to C. fusca in the Ranunculaceae. The phylogenetic relationships and taxonomic status of C. florida revealed by cp genome were consistent with the previous molecular studies, and can serve as a reference for future studies on molecular biology, evolution, and taxonomy in the genus Clematis.

16.
Mitochondrial DNA B Resour ; 7(11): 1907-1909, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36353059

RESUMEN

Allium triquetrum (Linnaeus, 1753) is a bulbous flowering plant of the genus Allium (Amaryllidaceae), native to the Mediterranean basin, and is now widespread and invasive in different parts of the world via ornamental horticultural trade. However, to date, the genomic study of A. triquetrum has lagged, which impedes the development of appropriate utilization and management practices for this species. Here, we report the complete chloroplast genome sequence of A. triquetrum. The chloroplast genome size of A. triquetrum was 153,298 bp, consisting of a pair of inverted repeat regions (26,547 bp), separated by a large single-copy (82,875 bp) region and a small single-copy (17,329 bp) region. Genome annotation predicted 133 genes, including 87 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on 60 whole chloroplast genome sequences of Allium species suggested that A. triquetrum and A. moly are sister to each other along with the clade of A. fasciculatum, A. hookeri, and A. macranthum.

17.
Sci Rep ; 12(1): 9075, 2022 May 31.
Artículo en Inglés | MEDLINE | ID: mdl-35641595

RESUMEN

The multi-channel lidar has fast acquisition speed, large data volume, high dimension, and vital real-time storage, which makes it challenging to be met using the traditional lidar data storage methods. This paper presents a novel approach to storing the multi-channel lidar data based on the principle of the tree structure, the adjacency linked list, the binary data storage. In the proposed system, a tree structure is constructed by the four-dimensional structure of the multi-channel lidar data, and a data retrieval method of the multi-channel lidar data file is given. The results show that the proposed tree structure approach can save the storage capacity and improve the retrieval speed, which can meet the needs for efficient storage and retrieval of multi-channel lidar data, and improve the data storage utilization and the practicality of multi-channel lidar system.

18.
Proc Natl Acad Sci U S A ; 105(18): 6650-5, 2008 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-18436642

RESUMEN

The biological functions of individual members of the large family of chitinase-like proteins from the red flour beetle, Tribolium castaneum (Tc), were examined by using gene-specific RNAi. One chitinase, TcCHT5, was found to be required for pupal-adult molting only. A lethal phenotype was observed when the transcript level of TcCHT5 was down-regulated by injection of TcCHT5-specific dsRNA into larvae. The larvae had metamorphosed into pupae and then to pharate adults but did not complete adult eclosion. Specific knockdown of transcripts for another chitinase, TcCHT10, which has multiple catalytic domains, prevented embryo hatch, larval molting, pupation, and adult metamorphosis, indicating a vital role for TcCHT10 during each of these processes. A third chitinase-like protein, TcCHT7, was required for abdominal contraction and wing/elytra extension immediately after pupation but was dispensable for larval-larval molting, pupation, and adult eclosion. The wing/elytra abnormalities found in TcCHT7-silenced pupae were also manifest in the ensuing adults. A fourth chitinase-like protein, TcIDGF4, exhibited no chitinolytic activity but contributed to adult eclosion. No phenotypic effects were observed after knockdown of transcripts for several other chitinase-like proteins, including imaginal disk growth factor IDGF2. These data indicate functional specialization among insect chitinase family genes, primarily during the molting process, and provide a biological rationale for the presence of a large assortment of chitinase-like proteins.


Asunto(s)
Quitinasas/genética , Quitinasas/metabolismo , Genes de Insecto , Familia de Multigenes , Interferencia de ARN , Tribolium/enzimología , Tribolium/genética , Abdomen , Animales , Embrión no Mamífero/efectos de los fármacos , Embrión no Mamífero/enzimología , Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica/efectos de los fármacos , Proteínas de Insectos/genética , Proteínas de Insectos/metabolismo , Larva/efectos de los fármacos , Larva/enzimología , Muda/efectos de los fármacos , Contracción Muscular/efectos de los fármacos , Óvulo/efectos de los fármacos , Óvulo/enzimología , Fenotipo , Pupa/efectos de los fármacos , Pupa/enzimología , ARN Bicatenario/farmacología , ARN Mensajero/genética , ARN Mensajero/metabolismo , Tribolium/embriología , Tribolium/crecimiento & desarrollo , Alas de Animales/efectos de los fármacos , Alas de Animales/enzimología
19.
Telemed J E Health ; 17(9): 705-11, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22035321

RESUMEN

Respiratory monitoring is widely used in clinical and healthcare practice to detect abnormal cardiopulmonary function during ordinary and routine activities. There are several approaches to estimate respiratory rate, including accelerometer(s) worn on the torso that are capable of sensing the inclination changes due to breathing. In this article, we present an adaptive band-pass filtering method combined with principal component analysis to derive the respiratory rate from three-dimensional acceleration data, using a body sensor network platform previously developed by us. In situ experiments with 12 subjects indicated that our method was capable of offering dynamic respiration rate estimation during various body activities such as sitting, walking, running, and sleeping. The experimental studies also suggested that our frequency spectrum-based method was more robust, resilient to motion artifact, and therefore outperformed those algorithms primarily based on spatial acceleration information.


Asunto(s)
Monitoreo Ambulatorio/instrumentación , Adulto , Algoritmos , Diseño de Equipo , Humanos , Análisis de Componente Principal , Reproducibilidad de los Resultados , Frecuencia Respiratoria , Sueño/fisiología , Caminata/fisiología
20.
Mitochondrial DNA B Resour ; 5(3): 3521-3523, 2020 Oct 09.
Artículo en Inglés | MEDLINE | ID: mdl-33458226

RESUMEN

Hippeastrum vittatum (L'Hér.) Herb. is a perennial herb in the Amaryllidaceae, which has been used as a medicinal and ornamental plant. Here, we assembled and characterized the complete chloroplast (cp) genome of H. vittatum by high throughput sequencing. As a result, the length of the complete cp genome is 158,082 bp with a canonical quadripartite structure, consists of a large single-copy region (LSC) of 86,165 bp, a small single-copy region (SSC) of 18,283 bp, and two inverted repeat (IR) regions of 26,817 bp, each. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and 8 rRNA genes. The phylogenomic analysis was performed based on the complete cp genomes of 30 species, which revealed the closest relationship between H. vittatum and H. rutilum in the genus Hippeastrum.

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