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1.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.

Ziegler, Carly G K; Allon, Samuel J; Nyquist, Sarah K; Mbano, Ian M; Miao, Vincent N; Tzouanas, Constantine N; Cao, Yuming; Yousif, Ashraf S; Bals, Julia; Hauser, Blake M; Feldman, Jared; Muus, Christoph; Wadsworth, Marc H; Kazer, Samuel W; Hughes, Travis K; Doran, Benjamin; Gatter, G James; Vukovic, Marko; Taliaferro, Faith; Mead, Benjamin E; Guo, Zhiru; Wang, Jennifer P; Gras, Delphine; Plaisant, Magali; Ansari, Meshal; Angelidis, Ilias; Adler, Heiko; Sucre, Jennifer M S; Taylor, Chase J; Lin, Brian; Waghray, Avinash; Mitsialis, Vanessa; Dwyer, Daniel F; Buchheit, Kathleen M; Boyce, Joshua A; Barrett, Nora A; Laidlaw, Tanya M; Carroll, Shaina L; Colonna, Lucrezia; Tkachev, Victor; Peterson, Christopher W; Yu, Alison; Zheng, Hengqi Betty; Gideon, Hannah P; Winchell, Caylin G; Lin, Philana Ling; Bingle, Colin D; Snapper, Scott B; Kropski, Jonathan A; Theis, Fabian J.

Cell; 181(5): 1016-1035.e19, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: covidwho-100497

2.

Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity.

van Galen, Peter; Hovestadt, Volker; Wadsworth Ii, Marc H; Hughes, Travis K; Griffin, Gabriel K; Battaglia, Sofia; Verga, Julia A; Stephansky, Jason; Pastika, Timothy J; Lombardi Story, Jennifer; Pinkus, Geraldine S; Pozdnyakova, Olga; Galinsky, Ilene; Stone, Richard M; Graubert, Timothy A; Shalek, Alex K; Aster, Jon C; Lane, Andrew A; Bernstein, Bradley E.

Cell; 176(6): 1265-1281.e24, 2019 03 07.

Artículo en Inglés | MEDLINE | ID: mdl-30827681

3.

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics.

Kotliar, Dylan; Lin, Aaron E; Logue, James; Hughes, Travis K; Khoury, Nadine M; Raju, Siddharth S; Wadsworth, Marc H; Chen, Han; Kurtz, Jonathan R; Dighero-Kemp, Bonnie; Bjornson, Zach B; Mukherjee, Nilanjan; Sellers, Brian A; Tran, Nancy; Bauer, Matthew R; Adams, Gordon C; Adams, Ricky; Rinn, John L; Melé, Marta; Schaffner, Stephen F; Nolan, Garry P; Barnes, Kayla G; Hensley, Lisa E; McIlwain, David R; Shalek, Alex K; Sabeti, Pardis C; Bennett, Richard S.

Cell; 183(5): 1383-1401.e19, 2020 Nov 25.

Artículo en Inglés | MEDLINE | ID: mdl-33159858

4.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.

Ziegler, Carly G K; Allon, Samuel J; Nyquist, Sarah K; Mbano, Ian M; Miao, Vincent N; Tzouanas, Constantine N; Cao, Yuming; Yousif, Ashraf S; Bals, Julia; Hauser, Blake M; Feldman, Jared; Muus, Christoph; Wadsworth, Marc H; Kazer, Samuel W; Hughes, Travis K; Doran, Benjamin; Gatter, G James; Vukovic, Marko; Taliaferro, Faith; Mead, Benjamin E; Guo, Zhiru; Wang, Jennifer P; Gras, Delphine; Plaisant, Magali; Ansari, Meshal; Angelidis, Ilias; Adler, Heiko; Sucre, Jennifer M S; Taylor, Chase J; Lin, Brian; Waghray, Avinash; Mitsialis, Vanessa; Dwyer, Daniel F; Buchheit, Kathleen M; Boyce, Joshua A; Barrett, Nora A; Laidlaw, Tanya M; Carroll, Shaina L; Colonna, Lucrezia; Tkachev, Victor; Peterson, Christopher W; Yu, Alison; Zheng, Hengqi Betty; Gideon, Hannah P; Winchell, Caylin G; Lin, Philana Ling; Bingle, Colin D; Snapper, Scott B; Kropski, Jonathan A; Theis, Fabian J.

Cell; 181(5): 1016-1035.e19, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: mdl-32413319

5.

Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies.

Hughes, Travis K; Wadsworth, Marc H; Gierahn, Todd M; Do, Tran; Weiss, David; Andrade, Priscila R; Ma, Feiyang; de Andrade Silva, Bruno J; Shao, Shuai; Tsoi, Lam C; Ordovas-Montanes, Jose; Gudjonsson, Johann E; Modlin, Robert L; Love, J Christopher; Shalek, Alex K.

Immunity; 53(4): 878-894.e7, 2020 Oct 13.

Artículo en Inglés | MEDLINE | ID: mdl-33053333

6.

Prevention of tuberculosis in macaques after intravenous BCG immunization.

Darrah, Patricia A; Zeppa, Joseph J; Maiello, Pauline; Hackney, Joshua A; Wadsworth, Marc H; Hughes, Travis K; Pokkali, Supriya; Swanson, Phillip A; Grant, Nicole L; Rodgers, Mark A; Kamath, Megha; Causgrove, Chelsea M; Laddy, Dominick J; Bonavia, Aurelio; Casimiro, Danilo; Lin, Philana Ling; Klein, Edwin; White, Alexander G; Scanga, Charles A; Shalek, Alex K; Roederer, Mario; Flynn, JoAnne L; Seder, Robert A.

Nature; 577(7788): 95-102, 2020 01.

Artículo en Inglés | MEDLINE | ID: mdl-31894150

7.

Allergic inflammatory memory in human respiratory epithelial progenitor cells.

Ordovas-Montanes, Jose; Dwyer, Daniel F; Nyquist, Sarah K; Buchheit, Kathleen M; Vukovic, Marko; Deb, Chaarushena; Wadsworth, Marc H; Hughes, Travis K; Kazer, Samuel W; Yoshimoto, Eri; Cahill, Katherine N; Bhattacharyya, Neil; Katz, Howard R; Berger, Bonnie; Laidlaw, Tanya M; Boyce, Joshua A; Barrett, Nora A; Shalek, Alex K.

Nature; 560(7720): 649-654, 2018 08.

Artículo en Inglés | MEDLINE | ID: mdl-30135581

8.

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput.

Gierahn, Todd M; Wadsworth, Marc H; Hughes, Travis K; Bryson, Bryan D; Butler, Andrew; Satija, Rahul; Fortune, Sarah; Love, J Christopher; Shalek, Alex K.

Nat Methods; 14(4): 395-398, 2017 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-28192419

9.

Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types.

Mead, Benjamin E; Ordovas-Montanes, Jose; Braun, Alexandra P; Levy, Lauren E; Bhargava, Prerna; Szucs, Matthew J; Ammendolia, Dustin A; MacMullan, Melanie A; Yin, Xiaolei; Hughes, Travis K; Wadsworth, Marc H; Ahmad, Rushdy; Rakoff-Nahoum, Seth; Carr, Steven A; Langer, Robert; Collins, James J; Shalek, Alex K; Karp, Jeffrey M.

BMC Biol; 16(1): 62, 2018 06 05.

Artículo en Inglés | MEDLINE | ID: mdl-29871632

10.

Seq-Well: A Sample-Efficient, Portable Picowell Platform for Massively Parallel Single-Cell RNA Sequencing.

Aicher, Toby P; Carroll, Shaina; Raddi, Gianmarco; Gierahn, Todd; Wadsworth, Marc H; Hughes, Travis K; Love, Chris; Shalek, Alex K.

Methods Mol Biol; 1979: 111-132, 2019.

Artículo en Inglés | MEDLINE | ID: mdl-31028635

11.

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

Ding, Jiarui; Adiconis, Xian; Simmons, Sean K; Kowalczyk, Monika S; Hession, Cynthia C; Marjanovic, Nemanja D; Hughes, Travis K; Wadsworth, Marc H; Burks, Tyler; Nguyen, Lan T; Kwon, John Y H; Barak, Boaz; Ge, William; Kedaigle, Amanda J; Carroll, Shaina; Li, Shuqiang; Hacohen, Nir; Rozenblatt-Rosen, Orit; Shalek, Alex K; Villani, Alexandra-Chloé; Regev, Aviv; Levin, Joshua Z.

Nat Biotechnol; 38(6): 756, 2020 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-32341567

12.

Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

Ding, Jiarui; Adiconis, Xian; Simmons, Sean K; Kowalczyk, Monika S; Hession, Cynthia C; Marjanovic, Nemanja D; Hughes, Travis K; Wadsworth, Marc H; Burks, Tyler; Nguyen, Lan T; Kwon, John Y H; Barak, Boaz; Ge, William; Kedaigle, Amanda J; Carroll, Shaina; Li, Shuqiang; Hacohen, Nir; Rozenblatt-Rosen, Orit; Shalek, Alex K; Villani, Alexandra-Chloé; Regev, Aviv; Levin, Joshua Z.

Nat Biotechnol; 38(6): 737-746, 2020 06.

Artículo en Inglés | MEDLINE | ID: mdl-32341560

13.

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.

Tirosh, Itay; Izar, Benjamin; Prakadan, Sanjay M; Wadsworth, Marc H; Treacy, Daniel; Trombetta, John J; Rotem, Asaf; Rodman, Christopher; Lian, Christine; Murphy, George; Fallahi-Sichani, Mohammad; Dutton-Regester, Ken; Lin, Jia-Ren; Cohen, Ofir; Shah, Parin; Lu, Diana; Genshaft, Alex S; Hughes, Travis K; Ziegler, Carly G K; Kazer, Samuel W; Gaillard, Aleth; Kolb, Kellie E; Villani, Alexandra-Chloé; Johannessen, Cory M; Andreev, Aleksandr Y; Van Allen, Eliezer M; Bertagnolli, Monica; Sorger, Peter K; Sullivan, Ryan J; Flaherty, Keith T; Frederick, Dennie T; Jané-Valbuena, Judit; Yoon, Charles H; Rozenblatt-Rosen, Orit; Shalek, Alex K; Regev, Aviv; Garraway, Levi A.

Science; 352(6282): 189-96, 2016 Apr 08.

Artículo en Inglés | MEDLINE | ID: mdl-27124452

14.

Marrying microfluidics and microwells for parallel, high-throughput single-cell genomics.

Wadsworth, Marc H; Hughes, Travis K; Shalek, Alex K.

Genome Biol; 16: 129, 2015 Jun 20.

Artículo en Inglés | MEDLINE | ID: mdl-26087845

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SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.

Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity.

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.

Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies.

Prevention of tuberculosis in macaques after intravenous BCG immunization.

Allergic inflammatory memory in human respiratory epithelial progenitor cells.

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput.

Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types.

Seq-Well: A Sample-Efficient, Portable Picowell Platform for Massively Parallel Single-Cell RNA Sequencing.

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.

Marrying microfluidics and microwells for parallel, high-throughput single-cell genomics.