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1.

Saturation mutagenesis reveals manifold determinants of exon definition.

Ke, Shengdong; Anquetil, Vincent; Zamalloa, Jorge Rojas; Maity, Alisha; Yang, Anthony; Arias, Mauricio A; Kalachikov, Sergey; Russo, James J; Ju, Jingyue; Chasin, Lawrence A.

Genome Res; 28(1): 11-24, 2018 01.

Artículo en Inglés | MEDLINE | ID: mdl-29242188

2.

Nucleotide Analogues as Inhibitors of SARS-CoV-2 Polymerase, a Key Drug Target for COVID-19.

Chien, Minchen; Anderson, Thomas K; Jockusch, Steffen; Tao, Chuanjuan; Li, Xiaoxu; Kumar, Shiv; Russo, James J; Kirchdoerfer, Robert N; Ju, Jingyue.

J Proteome Res; 19(11): 4690-4697, 2020 11 06.

Artículo en Inglés | MEDLINE | ID: mdl-32692185

3.

Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array.

Stranges, P Benjamin; Palla, Mirkó; Kalachikov, Sergey; Nivala, Jeff; Dorwart, Michael; Trans, Andrew; Kumar, Shiv; Porel, Mintu; Chien, Minchen; Tao, Chuanjuan; Morozova, Irina; Li, Zengmin; Shi, Shundi; Aberra, Aman; Arnold, Cleoma; Yang, Alexander; Aguirre, Anne; Harada, Eric T; Korenblum, Daniel; Pollard, James; Bhat, Ashwini; Gremyachinskiy, Dmitriy; Bibillo, Arek; Chen, Roger; Davis, Randy; Russo, James J; Fuller, Carl W; Roever, Stefan; Ju, Jingyue; Church, George M.

Proc Natl Acad Sci U S A; 113(44): E6749-E6756, 2016 11 01.

Artículo en Inglés | MEDLINE | ID: mdl-27729524

4.

Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array.

Fuller, Carl W; Kumar, Shiv; Porel, Mintu; Chien, Minchen; Bibillo, Arek; Stranges, P Benjamin; Dorwart, Michael; Tao, Chuanjuan; Li, Zengmin; Guo, Wenjing; Shi, Shundi; Korenblum, Daniel; Trans, Andrew; Aguirre, Anne; Liu, Edward; Harada, Eric T; Pollard, James; Bhat, Ashwini; Cech, Cynthia; Yang, Alexander; Arnold, Cleoma; Palla, Mirkó; Hovis, Jennifer; Chen, Roger; Morozova, Irina; Kalachikov, Sergey; Russo, James J; Kasianowicz, John J; Davis, Randy; Roever, Stefan; Church, George M; Ju, Jingyue.

Proc Natl Acad Sci U S A; 113(19): 5233-8, 2016 May 10.

Artículo en Inglés | MEDLINE | ID: mdl-27091962

5.

Photochemical conversion of a cytidine derivative to a thymidine analog via [2+2]-cycloaddition.

Li, Xiaoxu; Erturk, Ece; Chen, Xin; Kumar, Shiv; Guo, Cheng; Jockusch, Steffen; Russo, James J; Bestor, Timothy H; Ju, Jingyue.

Photochem Photobiol Sci; 17(8): 1049-1055, 2018 Aug 08.

Artículo en Inglés | MEDLINE | ID: mdl-29926889

6.

A strategy to capture and characterize the synaptic transcriptome.

Puthanveettil, Sathyanarayanan V; Antonov, Igor; Kalachikov, Sergey; Rajasethupathy, Priyamvada; Choi, Yun-Beom; Kohn, Andrea B; Citarella, Mathew; Yu, Fahong; Karl, Kevin A; Kinet, Maxime; Morozova, Irina; Russo, James J; Ju, Jingyue; Moroz, Leonid L; Kandel, Eric R.

Proc Natl Acad Sci U S A; 110(18): 7464-9, 2013 Apr 30.

Artículo en Inglés | MEDLINE | ID: mdl-23589870

7.

Quantitative evaluation of all hexamers as exonic splicing elements.

Ke, Shengdong; Shang, Shulian; Kalachikov, Sergey M; Morozova, Irina; Yu, Lin; Russo, James J; Ju, Jingyue; Chasin, Lawrence A.

Genome Res; 21(8): 1360-74, 2011 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-21659425

8.

A MEMS-Based Approach to Single Nucleotide Polymorphism Genotyping.

Zhu, Jing; Palla, Mirkó; Ronca, Stefano; Warpner, Ronald; Ju, Jingyue; Lin, Qiao.

Sens Actuators A Phys; 195: 175-182, 2013 Jun 01.

Artículo en Inglés | MEDLINE | ID: mdl-24729659

9.

Design and synthesis of cleavable biotinylated dideoxynucleotides for DNA sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Qiu, Chunmei; Kumar, Shiv; Guo, Jia; Yu, Lin; Guo, Wenjing; Shi, Shundi; Russo, James J; Ju, Jingyue.

Anal Biochem; 427(2): 193-201, 2012 Aug 15.

Artículo en Inglés | MEDLINE | ID: mdl-22543091

10.

Mitochondrial single nucleotide polymorphism genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using cleavable biotinylated dideoxynucleotides.

Qiu, Chunmei; Kumar, Shiv; Guo, Jia; Lu, Jiesheng; Shi, Shundi; Kalachikov, Sergey M; Russo, James J; Naini, Ali B; Schon, Eric A; Ju, Jingyue.

Anal Biochem; 427(2): 202-10, 2012 Aug 15.

Artículo en Inglés | MEDLINE | ID: mdl-22579594

11.

CdSe/ZnS core shell quantum dot-based FRET binary oligonucleotide probes for detection of nucleic acids.

Peng, Yiru; Qiu, Chunmei; Jockusch, Steffen; Scott, Amy M; Li, Zengmin; Turro, Nicholas J; Ju, Jingyue.

Photochem Photobiol Sci; 11(6): 881-4, 2012 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-21874193

12.

Fluorescent hybridization probes for nucleic acid detection.

Guo, Jia; Ju, Jingyue; Turro, Nicholas J.

Anal Bioanal Chem; 402(10): 3115-25, 2012 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-22086400

13.

A novel class of small RNAs bind to MILI protein in mouse testes.

Aravin, Alexei; Gaidatzis, Dimos; Pfeffer, Sébastien; Lagos-Quintana, Mariana; Landgraf, Pablo; Iovino, Nicola; Morris, Patricia; Brownstein, Michael J; Kuramochi-Miyagawa, Satomi; Nakano, Toru; Chien, Minchen; Russo, James J; Ju, Jingyue; Sheridan, Robert; Sander, Chris; Zavolan, Mihaela; Tuschl, Thomas.

Nature; 442(7099): 203-7, 2006 Jul 13.

Artículo en Inglés | MEDLINE | ID: mdl-16751777

14.

Translational control analysis by translationally active RNA capture/microarray analysis (TrIP-Chip).

Kudo, Kenji; Xi, Yaguang; Wang, Yuan; Song, Bo; Chu, Edward; Ju, Jingyue; Russo, James J; Ju, Jingfang.

Nucleic Acids Res; 38(9): e104, 2010 May.

Artículo en Inglés | MEDLINE | ID: mdl-20123731

15.

An integrated system for DNA sequencing by synthesis using novel nucleotide analogues.

Guo, Jia; Yu, Lin; Turro, Nicholas J; Ju, Jingyue.

Acc Chem Res; 43(4): 551-63, 2010 Apr 20.

Artículo en Inglés | MEDLINE | ID: mdl-20121268

16.

Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.

Guo, Jia; Xu, Ning; Li, Zengmin; Zhang, Shenglong; Wu, Jian; Kim, Dae Hyun; Sano Marma, Mong; Meng, Qinglin; Cao, Huanyan; Li, Xiaoxu; Shi, Shundi; Yu, Lin; Kalachikov, Sergey; Russo, James J; Turro, Nicholas J; Ju, Jingyue.

Proc Natl Acad Sci U S A; 105(27): 9145-50, 2008 Jul 08.

Artículo en Inglés | MEDLINE | ID: mdl-18591653

17.

Nucleotide Analogues as Inhibitors of SARS-CoV-2 Polymerase.

Chien, Minchen; Anderson, Thomas K; Jockusch, Steffen; Tao, Chuanjuan; Kumar, Shiv; Li, Xiaoxu; Russo, James J; Kirchdoerfer, Robert N; Ju, Jingyue.

bioRxiv; 2020 Mar 20.

Artículo en Inglés | MEDLINE | ID: mdl-32511320

18.

A library of nucleotide analogues terminate RNA synthesis catalyzed by polymerases of coronaviruses that cause SARS and COVID-19.

Jockusch, Steffen; Tao, Chuanjuan; Li, Xiaoxu; Anderson, Thomas K; Chien, Minchen; Kumar, Shiv; Russo, James J; Kirchdoerfer, Robert N; Ju, Jingyue.

Antiviral Res; 180: 104857, 2020 08.

Artículo en Inglés | MEDLINE | ID: mdl-32562705

19.

Nucleotide analogues as inhibitors of SARS-CoV Polymerase.

Ju, Jingyue; Li, Xiaoxu; Kumar, Shiv; Jockusch, Steffen; Chien, Minchen; Tao, Chuanjuan; Morozova, Irina; Kalachikov, Sergey; Kirchdoerfer, Robert N; Russo, James J.

Pharmacol Res Perspect; 8(6): e00674, 2020 12.

Artículo en Inglés | MEDLINE | ID: mdl-33124786

20.

Sofosbuvir terminated RNA is more resistant to SARS-CoV-2 proofreader than RNA terminated by Remdesivir.

Jockusch, Steffen; Tao, Chuanjuan; Li, Xiaoxu; Chien, Minchen; Kumar, Shiv; Morozova, Irina; Kalachikov, Sergey; Russo, James J; Ju, Jingyue.

Sci Rep; 10(1): 16577, 2020 10 06.

Artículo en Inglés | MEDLINE | ID: mdl-33024223

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