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1.

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Lu, Jing; du Plessis, Louis; Liu, Zhe; Hill, Verity; Kang, Min; Lin, Huifang; Sun, Jiufeng; François, Sarah; Kraemer, Moritz U G; Faria, Nuno R; McCrone, John T; Peng, Jinju; Xiong, Qianling; Yuan, Runyu; Zeng, Lilian; Zhou, Pingping; Liang, Chumin; Yi, Lina; Liu, Jun; Xiao, Jianpeng; Hu, Jianxiong; Liu, Tao; Ma, Wenjun; Li, Wei; Su, Juan; Zheng, Huanying; Peng, Bo; Fang, Shisong; Su, Wenzhe; Li, Kuibiao; Sun, Ruilin; Bai, Ru; Tang, Xi; Liang, Minfeng; Quick, Josh; Song, Tie; Rambaut, Andrew; Loman, Nick; Raghwani, Jayna; Pybus, Oliver G; Ke, Changwen.

Cell; 181(5): 997-1003.e9, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: mdl-32359424

2.

Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities.

Jia, Na; Wang, Jinfeng; Shi, Wenqiang; Du, Lifeng; Sun, Yi; Zhan, Wei; Jiang, Jia-Fu; Wang, Qian; Zhang, Bing; Ji, Peifeng; Bell-Sakyi, Lesley; Cui, Xiao-Ming; Yuan, Ting-Ting; Jiang, Bao-Gui; Yang, Wei-Fei; Lam, Tommy Tsan-Yuk; Chang, Qiao-Cheng; Ding, Shu-Jun; Wang, Xian-Jun; Zhu, Jin-Guo; Ruan, Xiang-Dong; Zhao, Lin; Wei, Jia-Te; Ye, Run-Ze; Que, Teng Cheng; Du, Chun-Hong; Zhou, Yu-Hao; Cheng, Jing Xia; Dai, Pei-Fang; Guo, Wen-Bin; Han, Xiao-Hu; Huang, En-Jiong; Li, Lian-Feng; Wei, Wei; Gao, Yu-Chi; Liu, Jing-Ze; Shao, Hong-Ze; Wang, Xin; Wang, Chong-Cai; Yang, Tian-Ci; Huo, Qiu-Bo; Li, Wei; Chen, Hai-Ying; Chen, Shen-En; Zhou, Ling-Guo; Ni, Xue-Bing; Tian, Jun-Hua; Sheng, Yue; Liu, Tao; Pan, Yu-Sheng.

Cell; 182(5): 1328-1340.e13, 2020 Sep 03.

Artículo en Inglés | MEDLINE | ID: mdl-32814014

3.

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Vasaikar, Suhas; Huang, Chen; Wang, Xiaojing; Petyuk, Vladislav A; Savage, Sara R; Wen, Bo; Dou, Yongchao; Zhang, Yun; Shi, Zhiao; Arshad, Osama A; Gritsenko, Marina A; Zimmerman, Lisa J; McDermott, Jason E; Clauss, Therese R; Moore, Ronald J; Zhao, Rui; Monroe, Matthew E; Wang, Yi-Ting; Chambers, Matthew C; Slebos, Robbert J C; Lau, Ken S; Mo, Qianxing; Ding, Li; Ellis, Matthew; Thiagarajan, Mathangi; Kinsinger, Christopher R; Rodriguez, Henry; Smith, Richard D; Rodland, Karin D; Liebler, Daniel C; Liu, Tao; Zhang, Bing.

Cell; 177(4): 1035-1049.e19, 2019 05 02.

Artículo en Inglés | MEDLINE | ID: mdl-31031003

4.

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

Zhang, Hui; Liu, Tao; Zhang, Zhen; Payne, Samuel H; Zhang, Bai; McDermott, Jason E; Zhou, Jian-Ying; Petyuk, Vladislav A; Chen, Li; Ray, Debjit; Sun, Shisheng; Yang, Feng; Chen, Lijun; Wang, Jing; Shah, Punit; Cha, Seong Won; Aiyetan, Paul; Woo, Sunghee; Tian, Yuan; Gritsenko, Marina A; Clauss, Therese R; Choi, Caitlin; Monroe, Matthew E; Thomas, Stefani; Nie, Song; Wu, Chaochao; Moore, Ronald J; Yu, Kun-Hsing; Tabb, David L; Fenyö, David; Bafna, Vineet; Wang, Yue; Rodriguez, Henry; Boja, Emily S; Hiltke, Tara; Rivers, Robert C; Sokoll, Lori; Zhu, Heng; Shih, Ie-Ming; Cope, Leslie; Pandey, Akhilesh; Zhang, Bing; Snyder, Michael P; Levine, Douglas A; Smith, Richard D; Chan, Daniel W; Rodland, Karin D.

Cell; 166(3): 755-765, 2016 Jul 28.

Artículo en Inglés | MEDLINE | ID: mdl-27372738

5.

Genome-wide map of nuclear protein degradation shows NCoR1 turnover as a key to mitochondrial gene regulation.

Catic, André; Suh, Carol Y; Hill, Cedric T; Daheron, Laurence; Henkel, Theresa; Orford, Keith W; Dombkowski, David M; Liu, Tao; Liu, X Shirley; Scadden, David T.

Cell; 155(6): 1380-95, 2013 Dec 05.

Artículo en Inglés | MEDLINE | ID: mdl-24315104

6.

In situ NMR metrology reveals reaction mechanisms in redox flow batteries.

Zhao, Evan Wenbo; Liu, Tao; Jónsson, Erlendur; Lee, Jeongjae; Temprano, Israel; Jethwa, Rajesh B; Wang, Anqi; Smith, Holly; Carretero-González, Javier; Song, Qilei; Grey, Clare P.

Nature; 579(7798): 224-228, 2020 03.

Artículo en Inglés | MEDLINE | ID: mdl-32123353

7.

Tetherin Suppresses Type I Interferon Signaling by Targeting MAVS for NDP52-Mediated Selective Autophagic Degradation in Human Cells.

Jin, Shouheng; Tian, Shuo; Luo, Man; Xie, Weihong; Liu, Tao; Duan, Tianhao; Wu, Yaoxing; Cui, Jun.

Mol Cell; 68(2): 308-322.e4, 2017 Oct 19.

Artículo en Inglés | MEDLINE | ID: mdl-28965816

8.

hnRNPLL controls pluripotency exit of embryonic stem cells by modulating alternative splicing of Tbx3 and Bptf.

Wang, Xue; Ping, Changyun; Tan, Puwen; Sun, Chenguang; Liu, Guang; Liu, Tao; Yang, Shuchun; Si, Yanmin; Zhao, Lijun; Hu, Yongfei; Jia, Yuyan; Wang, Xiaoshuang; Zhang, Meili; Wang, Fang; Wang, Dong; Yu, Jia; Ma, Yanni; Huang, Yue.

EMBO J; : e104729, 2020 Dec 22.

Artículo en Inglés | MEDLINE | ID: mdl-33349972

9.

Zika virus elicits inflammation to evade antiviral response by cleaving cGAS via NS1-caspase-1 axis.

Zheng, Yanyan; Liu, Qingxiang; Wu, Yaoxing; Ma, Ling; Zhang, Zhenzhen; Liu, Tao; Jin, Shouheng; She, Yuanchu; Li, Yi-Ping; Cui, Jun.

EMBO J; 37(18)2018 09 14.

Artículo en Inglés | MEDLINE | ID: mdl-30065070

10.

Vibrio cholerae cytotoxin MakA induces noncanonical autophagy resulting in the spatial inhibition of canonical autophagy.

Corkery, Dale P; Nadeem, Aftab; Aung, Kyaw Min; Hassan, Ahmed; Liu, Tao; Cervantes-Rivera, Ramón; Lystad, Alf Håkon; Wang, Hui; Persson, Karina; Puhar, Andrea; Simonsen, Anne; Uhlin, Bernt Eric; Wai, Sun Nyunt; Wu, Yao-Wen.

J Cell Sci; 2020 Oct 26.

Artículo en Inglés | MEDLINE | ID: mdl-33106317

11.

Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis.

Lan, Tian; Hutvagner, Gyorgy; Lan, Qing; Liu, Tao; Li, Jinyan.

Brief Bioinform; 2020 Oct 19.

Artículo en Inglés | MEDLINE | ID: mdl-33073843

12.

scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.

Wu, Xiaohui; Liu, Tao; Ye, Congting; Ye, Wenbin; Ji, Guoli.

Brief Bioinform; 2020 Nov 03.

Artículo en Inglés | MEDLINE | ID: mdl-33142319

13.

Benchmarking variant callers in next-generation and third-generation sequencing analysis.

Pei, Surui; Liu, Tao; Ren, Xue; Li, Weizhong; Chen, Chongjian; Xie, Zhi.

Brief Bioinform; 2020 Jul 23.

Artículo en Inglés | MEDLINE | ID: mdl-32698196

14.

Current Challenges and Routes Forward for Nonaqueous Lithium-Air Batteries.

Liu, Tao; Vivek, J Padmanabhan; Zhao, Evan Wenbo; Lei, Jiang; Garcia-Araez, Nuria; Grey, Clare P.

Chem Rev; 2020 Feb 24.

Artículo en Inglés | MEDLINE | ID: mdl-32090540

15.

An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.

Tsai, Chia-Feng; Zhao, Rui; Williams, Sarah M; Moore, Ronald J; Schultz, Kendall; Chrisler, William B; Pasa-Tolic, Ljiljana; Rodland, Karin D; Smith, Richard D; Shi, Tujin; Zhu, Ying; Liu, Tao.

Mol Cell Proteomics; 19(5): 828-838, 2020 May.

Artículo en Inglés | MEDLINE | ID: mdl-33451744

16.

An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.

Tsai, Chia-Feng; Zhao, Rui; Williams, Sarah M; Moore, Ronald J; Schultz, Kendall; Chrisler, William B; Pasa-Tolic, Ljiljana; Rodland, Karin D; Smith, Richard D; Shi, Tujin; Zhu, Ying; Liu, Tao.

Mol Cell Proteomics; 19(5): 828-838, 2020 05.

Artículo en Inglés | MEDLINE | ID: mdl-32127492

17.

DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools.

Luo, Hao; Lin, Yan; Liu, Tao; Lai, Fei-Liao; Zhang, Chun-Ting; Gao, Feng; Zhang, Ren.

Nucleic Acids Res; 2020 Oct 23.

Artículo en Inglés | MEDLINE | ID: mdl-33095861

18.

A CRISPR-associated factor Csa3a regulates DNA damage repair in Crenarchaeon Sulfolobus islandicus.

Liu, Zhenzhen; Sun, Mengmeng; Liu, Jilin; Liu, Tao; Ye, Qing; Li, Yingjun; Peng, Nan.

Nucleic Acids Res; 48(17): 9681-9693, 2020 09 25.

Artículo en Inglés | MEDLINE | ID: mdl-32833023

19.

The m6A reader YTHDF1 promotes ovarian cancer progression via augmenting EIF3C translation.

Liu, Tao; Wei, Qinglv; Jin, Jing; Luo, Qingya; Liu, Yi; Yang, Yu; Cheng, Chunming; Li, Lanfang; Pi, Jingnan; Si, Yanmin; Xiao, Hualiang; Li, Li; Rao, Shuan; Wang, Fang; Yu, Jianhua; Yu, Jia; Zou, Dongling; Yi, Ping.

Nucleic Acids Res; 48(7): 3816-3831, 2020 04 17.

Artículo en Inglés | MEDLINE | ID: mdl-31996915

20.

A long noncoding RNA distributed in both nucleus and cytoplasm operates in the PYCARD-regulated apoptosis by coordinating the epigenetic and translational regulation.

Miao, Hui; Wang, Linlin; Zhan, Haomiao; Dai, Jiangshan; Chang, Yanbo; Wu, Fan; Liu, Tao; Liu, Zhongyu; Gao, Chunfang; Li, Ling; Song, Xu.

PLoS Genet; 15(5): e1008144, 2019 05.

Artículo en Inglés | MEDLINE | ID: mdl-31086376

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Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities.

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

Genome-wide map of nuclear protein degradation shows NCoR1 turnover as a key to mitochondrial gene regulation.

In situ NMR metrology reveals reaction mechanisms in redox flow batteries.

Tetherin Suppresses Type I Interferon Signaling by Targeting MAVS for NDP52-Mediated Selective Autophagic Degradation in Human Cells.

hnRNPLL controls pluripotency exit of embryonic stem cells by modulating alternative splicing of Tbx3 and Bptf.

Zika virus elicits inflammation to evade antiviral response by cleaving cGAS via NS1-caspase-1 axis.

Vibrio cholerae cytotoxin MakA induces noncanonical autophagy resulting in the spatial inhibition of canonical autophagy.

Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis.

scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.

Benchmarking variant callers in next-generation and third-generation sequencing analysis.

Current Challenges and Routes Forward for Nonaqueous Lithium-Air Batteries.

An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.

An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics.

DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools.

A CRISPR-associated factor Csa3a regulates DNA damage repair in Crenarchaeon Sulfolobus islandicus.

The m6A reader YTHDF1 promotes ovarian cancer progression via augmenting EIF3C translation.

A long noncoding RNA distributed in both nucleus and cytoplasm operates in the PYCARD-regulated apoptosis by coordinating the epigenetic and translational regulation.