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1.

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Lu, Jing; du Plessis, Louis; Liu, Zhe; Hill, Verity; Kang, Min; Lin, Huifang; Sun, Jiufeng; François, Sarah; Kraemer, Moritz U G; Faria, Nuno R; McCrone, John T; Peng, Jinju; Xiong, Qianling; Yuan, Runyu; Zeng, Lilian; Zhou, Pingping; Liang, Chumin; Yi, Lina; Liu, Jun; Xiao, Jianpeng; Hu, Jianxiong; Liu, Tao; Ma, Wenjun; Li, Wei; Su, Juan; Zheng, Huanying; Peng, Bo; Fang, Shisong; Su, Wenzhe; Li, Kuibiao; Sun, Ruilin; Bai, Ru; Tang, Xi; Liang, Minfeng; Quick, Josh; Song, Tie; Rambaut, Andrew; Loman, Nick; Raghwani, Jayna; Pybus, Oliver G; Ke, Changwen.

Cell; 181(5): 997-1003.e9, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: mdl-32359424

2.

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018.

Hill, Sarah C; de Souza, Renato; Thézé, Julien; Claro, Ingra; Aguiar, Renato S; Abade, Leandro; Santos, Fabiana C P; Cunha, Mariana S; Nogueira, Juliana S; Salles, Flavia C S; Rocco, Iray M; Maeda, Adriana Y; Vasami, Fernanda G S; du Plessis, Louis; Silveira, Paola P; de Jesus, Jaqueline G; Quick, Joshua; Fernandes, Natália C C A; Guerra, Juliana M; Réssio, Rodrigo A; Giovanetti, Marta; Alcantara, Luiz C J; Cirqueira, Cinthya S; Díaz-Delgado, Josué; Macedo, Fernando L L; Timenetsky, Maria do Carmo S T; de Paula, Regiane; Spinola, Roberta; Telles de Deus, Juliana; Mucci, Luís F; Tubaki, Rosa Maria; de Menezes, Regiane M T; Ramos, Patrícia L; de Abreu, Andre L; Cruz, Laura N; Loman, Nick; Dellicour, Simon; Pybus, Oliver G; Sabino, Ester C; Faria, Nuno R.

PLoS Pathog; 16(8): e1008699, 2020 08.

Artículo en Inglés | MEDLINE | ID: mdl-32764827

3.

Identification of Common Deletions in the Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2.

Liu, Zhe; Zheng, Huanying; Lin, Huifang; Li, Mingyue; Yuan, Runyu; Peng, Jinju; Xiong, Qianling; Sun, Jiufeng; Li, Baisheng; Wu, Jie; Yi, Lina; Peng, Xiaofang; Zhang, Huan; Zhang, Wei; Hulswit, Ruben J G; Loman, Nick; Rambaut, Andrew; Ke, Changwen; Bowden, Thomas A; Pybus, Oliver G; Lu, Jing.

J Virol; 94(17)2020 08 17.

Artículo en Inglés | MEDLINE | ID: mdl-32571797

4.

Field investigation with real-time virus genetic characterisation support of a cluster of Ebola virus disease cases in Dubréka, Guinea, April to June 2015.

Pini, Alessandro; Zomahoun, Delayo; Duraffour, Sophie; Derrough, Tarik; Charles, Myrna; Quick, Joshua; Loman, Nick; Cowley, Lauren; Leno, Mamadou; Ouedraogo, Nobila; Thiam, Oumou; Hernández-Romieu, Alfonso; Iko, Annie; Keita, Halimatou; Konate, Djiba; Soumah, Aboubacar Aboubak; Bouchouar, Etran; Ileka-Priouzeau, Samuel; Keita, Sakoba; Diallo, Boubacar; Cisse, Fode; Jansa, Josep; Carroll, Miles; Günther, Stephan; Severi, Ettore; Formenty, Pierre.

Euro Surveill; 23(12)2018 03.

Artículo en Inglés | MEDLINE | ID: mdl-29589579

5.

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition.

Quince, Christopher; Ijaz, Umer Zeeshan; Loman, Nick; Eren, A Murat; Saulnier, Delphine; Russell, Julie; Haig, Sarah J; Calus, Szymon T; Quick, Joshua; Barclay, Andrew; Bertz, Martin; Blaut, Michael; Hansen, Richard; McGrogan, Paraic; Russell, Richard K; Edwards, Christine A; Gerasimidis, Konstantinos.

Am J Gastroenterol; 110(12): 1718-29; quiz 1730, 2015 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-26526081

6.

Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure.

Webber, Mark A; Whitehead, Rebekah N; Mount, Manuella; Loman, Nick J; Pallen, Mark J; Piddock, Laura J V.

J Antimicrob Chemother; 70(8): 2241-8, 2015 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-25953808

7.

Extreme genetic fragility of the HIV-1 capsid.

Rihn, Suzannah J; Wilson, Sam J; Loman, Nick J; Alim, Mudathir; Bakker, Saskia E; Bhella, David; Gifford, Robert J; Rixon, Frazer J; Bieniasz, Paul D.

PLoS Pathog; 9(6): e1003461, 2013.

Artículo en Inglés | MEDLINE | ID: mdl-23818857

8.

Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019

de Jesus, Jaqueline Goes; Dutra, Karina Rocha; Sales, Flavia Cristina da Silva; Claro, Ingra Morales; Terzian, Ana Carolina; Candido, Darlan da Silva; Hill, Sarah C; Thézé, Julien; Torres, Celeste; DAgostini, Tatiana Lang; Felix, Alvina Clara; Reis, Andreia F Negri; Alcantara, Luiz Carlos Junior; de Abreu, André L; Croda, Júlio HR; de Oliveira, Wanderson K; de Filipis, Ana Maria Bispo; Camis, Maria do Carmo Rodrigues dos Santos; Romano, Camila Malta; Loman, Nick J; Pybus, Oliver G; Sabino, Ester Cerdeira; Nogueira, Mauricio L; Faria, Nuno Rodrigues.

Mem. Inst. Oswaldo Cruz; 115: e190423, 2020. graf

Artículo en Inglés | LILACS-Express | ID: biblio-1135264

9.

The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella.

Ricci, Vito; Loman, Nick; Pallen, Mark; Ivens, Alasdair; Fookes, Maria; Langridge, Gemma C; Wain, John; Piddock, Laura J V.

J Antimicrob Chemother; 67(3): 589-99, 2012 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-22186876

10.

Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy.

Hornsey, Michael; Loman, Nick; Wareham, David W; Ellington, Matthew J; Pallen, Mark J; Turton, Jane F; Underwood, Anthony; Gaulton, Tom; Thomas, Claire P; Doumith, Michel; Livermore, David M; Woodford, Neil.

J Antimicrob Chemother; 66(7): 1499-503, 2011 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-21565804

11.

The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.

Ijaz, Umer Zeeshan; Quince, Christopher; Hanske, Laura; Loman, Nick; Calus, Szymon T; Bertz, Martin; Edwards, Christine A; Gaya, Daniel R; Hansen, Richard; McGrogan, Paraic; Russell, Richard K; Gerasimidis, Konstantinos.

PLoS One; 12(2): e0172605, 2017.

Artículo en Inglés | MEDLINE | ID: mdl-28222161

12.

The effect of DNA extraction methodology on gut microbiota research applications.

Gerasimidis, Konstantinos; Bertz, Martin; Quince, Christopher; Brunner, Katja; Bruce, Alanna; Combet, Emilie; Calus, Szymon; Loman, Nick; Ijaz, Umer Zeeshan.

BMC Res Notes; 9: 365, 2016 Jul 26.

Artículo en Inglés | MEDLINE | ID: mdl-27456340

13.

A disruptive sequencer meets disruptive publishing.

Loman, Nick; Goodwin, Sarah; Jansen, Hans; Loose, Matt.

F1000Res; 4: 1074, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-26998227

14.

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.

Freschi, Luca; Jeukens, Julie; Kukavica-Ibrulj, Irena; Boyle, Brian; Dupont, Marie-Josée; Laroche, Jérôme; Larose, Stéphane; Maaroufi, Halim; Fothergill, Joanne L; Moore, Matthew; Winsor, Geoffrey L; Aaron, Shawn D; Barbeau, Jean; Bell, Scott C; Burns, Jane L; Camara, Miguel; Cantin, André; Charette, Steve J; Dewar, Ken; Déziel, Éric; Grimwood, Keith; Hancock, Robert E W; Harrison, Joe J; Heeb, Stephan; Jelsbak, Lars; Jia, Baofeng; Kenna, Dervla T; Kidd, Timothy J; Klockgether, Jens; Lam, Joseph S; Lamont, Iain L; Lewenza, Shawn; Loman, Nick; Malouin, François; Manos, Jim; McArthur, Andrew G; McKeown, Josie; Milot, Julie; Naghra, Hardeep; Nguyen, Dao; Pereira, Sheldon K; Perron, Gabriel G; Pirnay, Jean-Paul; Rainey, Paul B; Rousseau, Simon; Santos, Pedro M; Stephenson, Anne; Taylor, Véronique; Turton, Jane F; Waglechner, Nicholas.

Front Microbiol; 6: 1036, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-26483767

15.

Pseudomonas aeruginosa adaptation in the nasopharyngeal reservoir leads to migration and persistence in the lungs.

Fothergill, Joanne L; Neill, Daniel R; Loman, Nick; Winstanley, Craig; Kadioglu, Aras.

Nat Commun; 5: 4780, 2014 Sep 02.

Artículo en Inglés | MEDLINE | ID: mdl-25179232

16.

A cross-sectional survey of bacterial species in plaque from client owned dogs with healthy gingiva, gingivitis or mild periodontitis.

Davis, Ian J; Wallis, Corrin; Deusch, Oliver; Colyer, Alison; Milella, Lisa; Loman, Nick; Harris, Stephen.

PLoS One; 8(12): e83158, 2013.

Artículo en Inglés | MEDLINE | ID: mdl-24349448

17.

Clusters of genetically similar isolates of Pseudomonas aeruginosa from multiple hospitals in the UK.

Martin, Kate; Baddal, Buket; Mustafa, Nazim; Perry, Claire; Underwood, Anthony; Constantidou, Chrystala; Loman, Nick; Kenna, Dervla T; Turton, Jane F.

J Med Microbiol; 62(Pt 7): 988-1000, 2013 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-23558134

18.

Voices of biotech.

Amit, Ido; Baker, David; Barker, Roger; Berger, Bonnie; Bertozzi, Carolyn; Bhatia, Sangeeta; Biffi, Alessandra; Demichelis, Francesca; Doudna, Jennifer; Dowdy, Steven F; Endy, Drew; Helmstaedter, Moritz; Junca, Howard; June, Carl; Kamb, Sasha; Khvorova, Anastasia; Kim, Dae-Hyeong; Kim, Jin-Soo; Krishnan, Yamuna; Lakadamyali, Melike; Lappalainen, Tuuli; Lewin, Sharon; Liao, James; Loman, Nick; Lundberg, Emma; Lynd, Lee; Martin, Cathie; Mellman, Ira; Miyawaki, Atsushi; Mummery, Christine; Nelson, Karen; Paz, Jeanne; Peralta-Yahya, Pamela; Picotti, Paola; Polyak, Kornelia; Prather, Kristala; Qin, Jun; Quake, Stephen; Regev, Aviv; Rogers, John A; Shetty, Reshma; Sommer, Morten; Stevens, Molly; Stolovitzky, Gustavo; Takahashi, Masayo; Tang, Fuchou; Teichmann, Sarah; Torres-Padilla, Maria-Elena; Tripathi, Leena; Vemula, Praveen.

Nat Biotechnol; 34(3): 270-5, 2016 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-26963549

19.

Role of Faecalibacterium prausnitzii in Crohn's Disease: friend, foe, or does not really matter?

Gerasimidis, Konstantinos; Russell, Richard; Hansen, Richard; Quince, Christopher; Loman, Nick; Bertz, Martin; Hanske, Laura; Blaut, Michael; McGrogan, Paraic; Edwards, Christine A.

Inflamm Bowel Dis; 20(7): E18-9, 2014 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-24859302

20.

So you want to be a computational biologist?

Loman, Nick; Watson, Mick.

Nat Biotechnol; 31(11): 996-8, 2013 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-24213777

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