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1.

Diversification of mammalian deltaviruses by host shifting.

Bergner, Laura M; Orton, Richard J; Broos, Alice; Tello, Carlos; Becker, Daniel J; Carrera, Jorge E; Patel, Arvind H; Biek, Roman; Streicker, Daniel G.

Proc Natl Acad Sci U S A; 118(3)2021 Jan 19.

Artículo en Inglés | MEDLINE | ID: mdl-33397804

2.

Attenuation of Infectious Bronchitis Virus in Eggs Results in Different Patterns of Genomic Variation across Multiple Replicates.

Oade, Michael S; Keep, Sarah; Freimanis, Graham L; Orton, Richard J; Britton, Paul; Hammond, John A; Bickerton, Erica.

J Virol; 93(14)2019 07 15.

Artículo en Inglés | MEDLINE | ID: mdl-31043525

3.

Demographic and environmental drivers of metagenomic viral diversity in vampire bats.

Bergner, Laura M; Orton, Richard J; Benavides, Julio A; Becker, Daniel J; Tello, Carlos; Biek, Roman; Streicker, Daniel G.

Mol Ecol; 29(1): 26-39, 2020 01.

Artículo en Inglés | MEDLINE | ID: mdl-31561274

4.

Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.

Shaw, Andrew E; Hughes, Joseph; Gu, Quan; Behdenna, Abdelkader; Singer, Joshua B; Dennis, Tristan; Orton, Richard J; Varela, Mariana; Gifford, Robert J; Wilson, Sam J; Palmarini, Massimo.

PLoS Biol; 15(12): e2004086, 2017 12.

Artículo en Inglés | MEDLINE | ID: mdl-29253856

5.

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020).

Walker, Peter J; Siddell, Stuart G; Lefkowitz, Elliot J; Mushegian, Arcady R; Adriaenssens, Evelien M; Dempsey, Donald M; Dutilh, Bas E; Harrach, Balázs; Harrison, Robert L; Hendrickson, R Curtis; Junglen, Sandra; Knowles, Nick J; Kropinski, Andrew M; Krupovic, Mart; Kuhn, Jens H; Nibert, Max; Orton, Richard J; Rubino, Luisa; Sabanadzovic, Sead; Simmonds, Peter; Smith, Donald B; Varsani, Arvind; Zerbini, Francisco Murilo; Davison, Andrew J.

Arch Virol; 165(11): 2737-2748, 2020 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-32816125

6.

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV).

Lefkowitz, Elliot J; Dempsey, Donald M; Hendrickson, Robert Curtis; Orton, Richard J; Siddell, Stuart G; Smith, Donald B.

Nucleic Acids Res; 46(D1): D708-D717, 2018 01 04.

Artículo en Inglés | MEDLINE | ID: mdl-29040670

7.

Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock.

Sumner, Tom; Orton, Richard J; Green, Darren M; Kao, Rowland R; Gubbins, Simon.

PLoS Comput Biol; 13(4): e1005470, 2017 04.

Artículo en Inglés | MEDLINE | ID: mdl-28369082

8.

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

Adams, Michael J; Lefkowitz, Elliot J; King, Andrew M Q; Harrach, Balázs; Harrison, Robert L; Knowles, Nick J; Kropinski, Andrew M; Krupovic, Mart; Kuhn, Jens H; Mushegian, Arcady R; Nibert, Max L; Sabanadzovic, Sead; Sanfaçon, Hélène; Siddell, Stuart G; Simmonds, Peter; Varsani, Arvind; Zerbini, Francisco Murilo; Orton, Richard J; Smith, Donald B; Gorbalenya, Alexander E; Davison, Andrew J.

Arch Virol; 162(5): 1441-1446, 2017 May.

Artículo en Inglés | MEDLINE | ID: mdl-28078475

9.

Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data.

Orton, Richard J; Wright, Caroline F; Morelli, Marco J; King, David J; Paton, David J; King, Donald P; Haydon, Daniel T.

BMC Genomics; 16: 229, 2015 Mar 24.

Artículo en Inglés | MEDLINE | ID: mdl-25886445

10.

Whole genome sequencing reveals local transmission patterns of Mycobacterium bovis in sympatric cattle and badger populations.

Biek, Roman; O'Hare, Anthony; Wright, David; Mallon, Tom; McCormick, Carl; Orton, Richard J; McDowell, Stanley; Trewby, Hannah; Skuce, Robin A; Kao, Rowland R.

PLoS Pathog; 8(11): e1003008, 2012.

Artículo en Inglés | MEDLINE | ID: mdl-23209404

11.

Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats.

Bergner, Laura M; Mollentze, Nardus; Orton, Richard J; Tello, Carlos; Broos, Alice; Biek, Roman; Streicker, Daniel G.

Viruses; 13(2)2021 02 06.

Artículo en Inglés | MEDLINE | ID: mdl-33562073

12.

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

da Silva Filipe, Ana; Shepherd, James G; Williams, Thomas; Hughes, Joseph; Aranday-Cortes, Elihu; Asamaphan, Patawee; Ashraf, Shirin; Balcazar, Carlos; Brunker, Kirstyn; Campbell, Alasdair; Carmichael, Stephen; Davis, Chris; Dewar, Rebecca; Gallagher, Michael D; Gunson, Rory; Hill, Verity; Ho, Antonia; Jackson, Ben; James, Edward; Jesudason, Natasha; Johnson, Natasha; McWilliam Leitch, E Carol; Li, Kathy; MacLean, Alasdair; Mair, Daniel; McAllister, David A; McCrone, John T; McDonald, Sarah E; McHugh, Martin P; Morris, A Keith; Nichols, Jenna; Niebel, Marc; Nomikou, Kyriaki; Orton, Richard J; O'Toole, Áine; Palmarini, Massimo; Parcell, Benjamin J; Parr, Yasmin A; Rambaut, Andrew; Rooke, Stefan; Shaaban, Sharif; Shah, Rajiv; Singer, Joshua B; Smollett, Katherine; Starinskij, Igor; Tong, Lily; Sreenu, Vattipally B; Wastnedge, Elizabeth; Holden, Matthew T G; Robertson, David L.

Nat Microbiol; 6(1): 112-122, 2021 01.

Artículo en Inglés | MEDLINE | ID: mdl-33349681

13.

Complete Genome Sequence of an Alphacoronavirus from Common Vampire Bats in Peru.

Bergner, Laura M; Orton, Richard J; Streicker, Daniel G.

Microbiol Resour Announc; 9(34)2020 Aug 20.

Artículo en Inglés | MEDLINE | ID: mdl-32816981

14.

Estimating viral bottleneck sizes for FMDV transmission within and between hosts and implications for the rate of viral evolution.

Orton, Richard J; Wright, Caroline F; King, Donald P; Haydon, Daniel T.

Interface Focus; 10(1): 20190066, 2020 Feb 06.

Artículo en Inglés | MEDLINE | ID: mdl-31897294

15.

No evidence for distinct types in the evolution of SARS-CoV-2.

MacLean, Oscar A; Orton, Richard J; Singer, Joshua B; Robertson, David L.

Virus Evol; 6(1): veaa034, 2020 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-32817804

16.

GoPrime: Development of an In Silico Framework to Predict the Performance of Real-Time PCR Primers and Probes Using Foot-and-Mouth Disease Virus as a Model.

Howson, Emma L A; Orton, Richard J; Mioulet, Valerie; Lembo, Tiziana; King, Donald P; Fowler, Veronica L.

Pathogens; 9(4)2020 Apr 20.

Artículo en Inglés | MEDLINE | ID: mdl-32326039

17.

Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses.

Clark, Jordan J; Gilray, Janice; Orton, Richard J; Baird, Margaret; Wilkie, Gavin; Filipe, Ana da Silva; Johnson, Nicholas; McInnes, Colin J; Kohl, Alain; Biek, Roman.

PLoS Negl Trop Dis; 14(9): e0008133, 2020 09.

Artículo en Inglés | MEDLINE | ID: mdl-32925939

18.

Virus Adaptation and Selection Following Challenge of Animals Vaccinated against Classical Swine Fever Virus.

Fahnøe, Ulrik; Pedersen, Anders Gorm; Johnston, Camille Melissa; Orton, Richard J; Höper, Dirk; Beer, Martin; Bukh, Jens; Belsham, Graham J; Rasmussen, Thomas Bruun.

Viruses; 11(10)2019 10 10.

Artículo en Inglés | MEDLINE | ID: mdl-31658773

19.

Using noninvasive metagenomics to characterize viral communities from wildlife.

Bergner, Laura M; Orton, Richard J; da Silva Filipe, Ana; Shaw, Andrew E; Becker, Daniel J; Tello, Carlos; Biek, Roman; Streicker, Daniel G.

Mol Ecol Resour; 19(1): 128-143, 2019 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-30240114

20.

Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes.

Babayan, Simon A; Orton, Richard J; Streicker, Daniel G.

Science; 362(6414): 577-580, 2018 11 02.

Artículo en Inglés | MEDLINE | ID: mdl-30385576

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