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1.

A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity.

Rajasethupathy, Priyamvada; Antonov, Igor; Sheridan, Robert; Frey, Sebastian; Sander, Chris; Tuschl, Thomas; Kandel, Eric R.

Cell; 149(3): 693-707, 2012 Apr 27.

Artículo en Inglés | MEDLINE | ID: mdl-22541438

2.

Structured States of Disordered Proteins from Genomic Sequences.

Toth-Petroczy, Agnes; Palmedo, Perry; Ingraham, John; Hopf, Thomas A; Berger, Bonnie; Sander, Chris; Marks, Debora S.

Cell; 167(1): 158-170.e12, 2016 Sep 22.

Artículo en Inglés | MEDLINE | ID: mdl-27662088

3.

3D RNA and Functional Interactions from Evolutionary Couplings.

Weinreb, Caleb; Riesselman, Adam J; Ingraham, John B; Gross, Torsten; Sander, Chris; Marks, Debora S.

Cell; 165(4): 963-75, 2016 May 05.

Artículo en Inglés | MEDLINE | ID: mdl-27087444

4.

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.

Kusebauch, Ulrike; Campbell, David S; Deutsch, Eric W; Chu, Caroline S; Spicer, Douglas A; Brusniak, Mi-Youn; Slagel, Joseph; Sun, Zhi; Stevens, Jeffrey; Grimes, Barbara; Shteynberg, David; Hoopmann, Michael R; Blattmann, Peter; Ratushny, Alexander V; Rinner, Oliver; Picotti, Paola; Carapito, Christine; Huang, Chung-Ying; Kapousouz, Meghan; Lam, Henry; Tran, Tommy; Demir, Emek; Aitchison, John D; Sander, Chris; Hood, Leroy; Aebersold, Ruedi; Moritz, Robert L.

Cell; 166(3): 766-778, 2016 Jul 28.

Artículo en Inglés | MEDLINE | ID: mdl-27453469

5.

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer.

Ciriello, Giovanni; Gatza, Michael L; Beck, Andrew H; Wilkerson, Matthew D; Rhie, Suhn K; Pastore, Alessandro; Zhang, Hailei; McLellan, Michael; Yau, Christina; Kandoth, Cyriac; Bowlby, Reanne; Shen, Hui; Hayat, Sikander; Fieldhouse, Robert; Lester, Susan C; Tse, Gary M K; Factor, Rachel E; Collins, Laura C; Allison, Kimberly H; Chen, Yunn-Yi; Jensen, Kristin; Johnson, Nicole B; Oesterreich, Steffi; Mills, Gordon B; Cherniack, Andrew D; Robertson, Gordon; Benz, Christopher; Sander, Chris; Laird, Peter W; Hoadley, Katherine A; King, Tari A; Perou, Charles M.

Cell; 163(2): 506-19, 2015 Oct 08.

Artículo en Inglés | MEDLINE | ID: mdl-26451490

6.

Three-dimensional structures of membrane proteins from genomic sequencing.

Hopf, Thomas A; Colwell, Lucy J; Sheridan, Robert; Rost, Burkhard; Sander, Chris; Marks, Debora S.

Cell; 149(7): 1607-21, 2012 Jun 22.

Artículo en Inglés | MEDLINE | ID: mdl-22579045

7.

LLGL2 rescues nutrient stress by promoting leucine uptake in ER⁺ breast cancer.

Saito, Yasuhiro; Li, Lewyn; Coyaud, Etienne; Luna, Augustin; Sander, Chris; Raught, Brian; Asara, John M; Brown, Myles; Muthuswamy, Senthil K.

Nature; 569(7755): 275-279, 2019 05.

Artículo en Inglés | MEDLINE | ID: mdl-30996345

8.

CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics.

Luna, Augustin; Elloumi, Fathi; Varma, Sudhir; Wang, Yanghsin; Rajapakse, Vinodh N; Aladjem, Mirit I; Robert, Jacques; Sander, Chris; Pommier, Yves; Reinhold, William C.

Nucleic Acids Res; 2020 Nov 16.

Artículo en Inglés | MEDLINE | ID: mdl-33196823

9.

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.

Rodchenkov, Igor; Babur, Ozgun; Luna, Augustin; Aksoy, Bulent Arman; Wong, Jeffrey V; Fong, Dylan; Franz, Max; Siper, Metin Can; Cheung, Manfred; Wrana, Michael; Mistry, Harsh; Mosier, Logan; Dlin, Jonah; Wen, Qizhi; O'Callaghan, Caitlin; Li, Wanxin; Elder, Geoffrey; Smith, Peter T; Dallago, Christian; Cerami, Ethan; Gross, Benjamin; Dogrusoz, Ugur; Demir, Emek; Bader, Gary D; Sander, Chris.

Nucleic Acids Res; 48(D1): D489-D497, 2020 01 08.

Artículo en Inglés | MEDLINE | ID: mdl-31647099

10.

Perturbation biology links temporal protein changes to drug responses in a melanoma cell line.

Nyman, Elin; Stein, Richard R; Jing, Xiaohong; Wang, Weiqing; Marks, Benjamin; Zervantonakis, Ioannis K; Korkut, Anil; Gauthier, Nicholas P; Sander, Chris.

PLoS Comput Biol; 16(7): e1007909, 2020 07.

Artículo en Inglés | MEDLINE | ID: mdl-32667922

11.

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.

Buffie, Charlie G; Bucci, Vanni; Stein, Richard R; McKenney, Peter T; Ling, Lilan; Gobourne, Asia; No, Daniel; Liu, Hui; Kinnebrew, Melissa; Viale, Agnes; Littmann, Eric; van den Brink, Marcel R M; Jenq, Robert R; Taur, Ying; Sander, Chris; Cross, Justin R; Toussaint, Nora C; Xavier, Joao B; Pamer, Eric G.

Nature; 517(7533): 205-8, 2015 Jan 08.

Artículo en Inglés | MEDLINE | ID: mdl-25337874

12.

The EVcouplings Python framework for coevolutionary sequence analysis.

Hopf, Thomas A; Green, Anna G; Schubert, Benjamin; Mersmann, Sophia; Schärfe, Charlotta P I; Ingraham, John B; Toth-Petroczy, Agnes; Brock, Kelly; Riesselman, Adam J; Palmedo, Perry; Kang, Chan; Sheridan, Robert; Draizen, Eli J; Dallago, Christian; Sander, Chris; Marks, Debora S.

Bioinformatics; 35(9): 1582-1584, 2019 05 01.

Artículo en Inglés | MEDLINE | ID: mdl-30304492

13.

Protein structure prediction assisted with sparse NMR data in CASP13.

Sala, Davide; Huang, Yuanpeng Janet; Cole, Casey A; Snyder, David A; Liu, Gaohua; Ishida, Yojiro; Swapna, G V T; Brock, Kelly P; Sander, Chris; Fidelis, Krzysztof; Kryshtafovych, Andriy; Inouye, Masayori; Tejero, Roberto; Valafar, Homayoun; Rosato, Antonio; Montelione, Gaetano T.

Proteins; 87(12): 1315-1332, 2019 12.

Artículo en Inglés | MEDLINE | ID: mdl-31603581

14.

Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response.

Lipchina, Inna; Elkabetz, Yechiel; Hafner, Markus; Sheridan, Robert; Mihailovic, Aleksandra; Tuschl, Thomas; Sander, Chris; Studer, Lorenz; Betel, Doron.

Genes Dev; 25(20): 2173-86, 2011 Oct 15.

Artículo en Inglés | MEDLINE | ID: mdl-22012620

15.

Protein structure determination by combining sparse NMR data with evolutionary couplings.

Tang, Yuefeng; Huang, Yuanpeng Janet; Hopf, Thomas A; Sander, Chris; Marks, Debora S; Montelione, Gaetano T.

Nat Methods; 12(8): 751-4, 2015 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-26121406

16.

Pathway and network analysis of cancer genomes.

Creixell, Pau; Reimand, Jüri; Haider, Syed; Wu, Guanming; Shibata, Tatsuhiro; Vazquez, Miguel; Mustonen, Ville; Gonzalez-Perez, Abel; Pearson, John; Sander, Chris; Raphael, Benjamin J; Marks, Debora S; Ouellette, B F Francis; Valencia, Alfonso; Bader, Gary D; Boutros, Paul C; Stuart, Joshua M; Linding, Rune; Lopez-Bigas, Nuria; Stein, Lincoln D.

Nat Methods; 12(7): 615-621, 2015 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-26125594

17.

MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer.

Gauthier, Nicholas Paul; Reznik, Ed; Gao, Jianjiong; Sumer, Selcuk Onur; Schultz, Nikolaus; Sander, Chris; Miller, Martin L.

Nucleic Acids Res; 44(D1): D986-91, 2016 Jan 04.

Artículo en Inglés | MEDLINE | ID: mdl-26590264

18.

A Hybrid Approach for Protein Structure Determination Combining Sparse NMR with Evolutionary Coupling Sequence Data.

Huang, Yuanpeng Janet; Brock, Kelly P; Sander, Chris; Marks, Debora S; Montelione, Gaetano T.

Adv Exp Med Biol; 1105: 153-169, 2018.

Artículo en Inglés | MEDLINE | ID: mdl-30617828

19.

All-atom 3D structure prediction of transmembrane ß-barrel proteins from sequences.

Hayat, Sikander; Sander, Chris; Marks, Debora S; Elofsson, Arne.

Proc Natl Acad Sci U S A; 112(17): 5413-8, 2015 Apr 28.

Artículo en Inglés | MEDLINE | ID: mdl-25858953

20.

Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication.

Shinbrot, Eve; Henninger, Erin E; Weinhold, Nils; Covington, Kyle R; Göksenin, A Yasemin; Schultz, Nikolaus; Chao, Hsu; Doddapaneni, HarshaVardhan; Muzny, Donna M; Gibbs, Richard A; Sander, Chris; Pursell, Zachary F; Wheeler, David A.

Genome Res; 24(11): 1740-50, 2014 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-25228659

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