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1.

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity.

Thomson, Emma C; Rosen, Laura E; Shepherd, James G; Spreafico, Roberto; da Silva Filipe, Ana; Wojcechowskyj, Jason A; Davis, Chris; Piccoli, Luca; Pascall, David J; Dillen, Josh; Lytras, Spyros; Czudnochowski, Nadine; Shah, Rajiv; Meury, Marcel; Jesudason, Natasha; De Marco, Anna; Li, Kathy; Bassi, Jessica; O'Toole, Aine; Pinto, Dora; Colquhoun, Rachel M; Culap, Katja; Jackson, Ben; Zatta, Fabrizia; Rambaut, Andrew; Jaconi, Stefano; Sreenu, Vattipally B; Nix, Jay; Zhang, Ivy; Jarrett, Ruth F; Glass, William G; Beltramello, Martina; Nomikou, Kyriaki; Pizzuto, Matteo; Tong, Lily; Cameroni, Elisabetta; Croll, Tristan I; Johnson, Natasha; Di Iulio, Julia; Wickenhagen, Arthur; Ceschi, Alessandro; Harbison, Aoife M; Mair, Daniel; Ferrari, Paolo; Smollett, Katherine; Sallusto, Federica; Carmichael, Stephen; Garzoni, Christian; Nichols, Jenna; Galli, Massimo.

Cell; 2021 Jan 28.

Artículo en Inglés | MEDLINE | ID: mdl-33621484

2.

Suboptimal SVR rates in African patients with atypical genotype 1 subtypes: Implications for global elimination of hepatitis C.

Childs, Kate; Davis, Christopher; Cannon, Mary; Montague, Sarah; Filipe, Ana; Tong, Lily; Simmonds, Peter; Smith, Donald; Thomson, Emma C; Dusheiko, Geoff; Agarwal, Kosh.

J Hepatol; 71(6): 1099-1105, 2019 12.

Artículo en Inglés | MEDLINE | ID: mdl-31400349

3.

Analysis of tick-borne encephalitis virus-induced host responses in human cells of neuronal origin and interferon-mediated protection.

Selinger, Martin; Wilkie, Gavin S; Tong, Lily; Gu, Quan; Schnettler, Esther; Grubhoffer, Libor; Kohl, Alain.

J Gen Virol; 98(8): 2043-2060, 2017 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-28786780

4.

Novel Role for Protein Inhibitor of Activated STAT 4 (PIAS4) in the Restriction of Herpes Simplex Virus 1 by the Cellular Intrinsic Antiviral Immune Response.

Conn, Kristen L; Wasson, Peter; McFarlane, Steven; Tong, Lily; Brown, James R; Grant, Kyle G; Domingues, Patricia; Boutell, Chris.

J Virol; 90(9): 4807-4826, 2016 May.

Artículo en Inglés | MEDLINE | ID: mdl-26937035

5.

SUMO Ligase Protein Inhibitor of Activated STAT1 (PIAS1) Is a Constituent Promyelocytic Leukemia Nuclear Body Protein That Contributes to the Intrinsic Antiviral Immune Response to Herpes Simplex Virus 1.

Brown, James R; Conn, Kristen L; Wasson, Peter; Charman, Matthew; Tong, Lily; Grant, Kyle; McFarlane, Steven; Boutell, Chris.

J Virol; 90(13): 5939-5952, 2016 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-27099310

6.

Corrigendum: Analysis of tick-borne encephalitis virus-induced host responses in human cells of neuronal origin and interferon-mediated protection.

Selinger, Martin; Wilkie, Gavin S; Tong, Lily; Gu, Quan; Schnettler, Esther; Grubhoffer, Libor; Kohl, Alain.

J Gen Virol; 99(8): 1147-1149, 2018 08.

Artículo en Inglés | MEDLINE | ID: mdl-30067173

7.

Depletion of intracellular zinc inhibits the ubiquitin ligase activity of viral regulatory protein ICP0 and restricts herpes simplex virus 1 replication in cell culture.

Grant, Kyle; Grant, Louise; Tong, Lily; Boutell, Chris.

J Virol; 86(7): 4029-33, 2012 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-22278229

8.

Functional characterization of residues required for the herpes simplex virus 1 E3 ubiquitin ligase ICP0 to interact with the cellular E2 ubiquitin-conjugating enzyme UBE2D1 (UbcH5a).

Vanni, Emilia; Gatherer, Derek; Tong, Lily; Everett, Roger D; Boutell, Chris.

J Virol; 86(11): 6323-33, 2012 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-22438555

9.

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p.

Moxley, Joel F; Jewett, Michael C; Antoniewicz, Maciek R; Villas-Boas, Silas G; Alper, Hal; Wheeler, Robert T; Tong, Lily; Hinnebusch, Alan G; Ideker, Trey; Nielsen, Jens; Stephanopoulos, Gregory.

Proc Natl Acad Sci U S A; 106(16): 6477-82, 2009 Apr 21.

Artículo en Inglés | MEDLINE | ID: mdl-19346491

10.

Analysis of herpes simplex virus type 1 DNA packaging signal mutations in the context of the viral genome.

Tong, Lily; Stow, Nigel D.

J Virol; 84(1): 321-9, 2010 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-19864384

11.

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

da Silva Filipe, Ana; Shepherd, James G; Williams, Thomas; Hughes, Joseph; Aranday-Cortes, Elihu; Asamaphan, Patawee; Ashraf, Shirin; Balcazar, Carlos; Brunker, Kirstyn; Campbell, Alasdair; Carmichael, Stephen; Davis, Chris; Dewar, Rebecca; Gallagher, Michael D; Gunson, Rory; Hill, Verity; Ho, Antonia; Jackson, Ben; James, Edward; Jesudason, Natasha; Johnson, Natasha; McWilliam Leitch, E Carol; Li, Kathy; MacLean, Alasdair; Mair, Daniel; McAllister, David A; McCrone, John T; McDonald, Sarah E; McHugh, Martin P; Morris, A Keith; Nichols, Jenna; Niebel, Marc; Nomikou, Kyriaki; Orton, Richard J; O'Toole, Áine; Palmarini, Massimo; Parcell, Benjamin J; Parr, Yasmin A; Rambaut, Andrew; Rooke, Stefan; Shaaban, Sharif; Shah, Rajiv; Singer, Joshua B; Smollett, Katherine; Starinskij, Igor; Tong, Lily; Sreenu, Vattipally B; Wastnedge, Elizabeth; Holden, Matthew T G; Robertson, David L.

Nat Microbiol; 6(1): 112-122, 2021 01.

Artículo en Inglés | MEDLINE | ID: mdl-33349681

12.

Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus.

Modha, Sejal; Hughes, Joseph; Bianco, Giovanni; Ferguson, Heather M; Helm, Barbara; Tong, Lily; Wilkie, Gavin S; Kohl, Alain; Schnettler, Esther.

Viruses; 11(9)2019 09 17.

Artículo en Inglés | MEDLINE | ID: mdl-31533247

13.

Interpreting Viral Deep Sequencing Data with GLUE.

Singer, Joshua B; Thomson, Emma C; Hughes, Joseph; Aranday-Cortes, Elihu; McLauchlan, John; da Silva Filipe, Ana; Tong, Lily; Manso, Carmen F; Gifford, Robert J; Robertson, David L; Barnes, Eleanor; Ansari, M Azim; Mbisa, Jean L; Bibby, David F; Bradshaw, Daniel; Smith, David.

Viruses; 11(4)2019 04 03.

Artículo en Inglés | MEDLINE | ID: mdl-30987147

14.

Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas.

Dunlop, James I; Szemiel, Agnieszka M; Navarro, Aitor; Wilkie, Gavin S; Tong, Lily; Modha, Sejal; Mair, Daniel; Sreenu, Vattipally B; Da Silva Filipe, Ana; Li, Ping; Huang, Yan-Jang S; Brennan, Benjamin; Hughes, Joseph; Vanlandingham, Dana L; Higgs, Stephen; Elliott, Richard M; Kohl, Alain.

PLoS Negl Trop Dis; 12(10): e0006884, 2018 10.

Artículo en Inglés | MEDLINE | ID: mdl-30372452

15.

Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

da Silva Filipe, Ana; Shepherd, James G; Williams, Thomas; Hughes, Joseph; Aranday-Cortes, Elihu; Asamaphan, Patawee; Ashraf, Shirin; Balcazar, Carlos; Brunker, Kirstyn; Campbell, Alasdair; Carmichael, Stephen; Davis, Chris; Dewar, Rebecca; Gallagher, Michael D; Gunson, Rory; Hill, Verity; Ho, Antonia; Jackson, Ben; James, Edward; Jesudason, Natasha; Johnson, Natasha; McWilliam Leitch, E Carol; Li, Kathy; MacLean, Alasdair; Mair, Daniel; McAllister, David A; McCrone, John T; McDonald, Sarah E; McHugh, Martin P; Morris, A Keith; Nichols, Jenna; Niebel, Marc; Nomikou, Kyriaki; Orton, Richard J; O'Toole, Áine; Palmarini, Massimo; Parcell, Benjamin J; Parr, Yasmin A; Rambaut, Andrew; Rooke, Stefan; Shaaban, Sharif; Shah, Rajiv; Singer, Joshua B; Smollett, Katherine; Starinskij, Igor; Tong, Lily; Sreenu, Vattipally B; Wastnedge, Elizabeth; Holden, Matthew T G; Robertson, David L.

Nat Microbiol; 2021 Jan 18.

Artículo en Inglés | MEDLINE | ID: mdl-33462438

16.

Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

da Silva Filipe, Ana; Shepherd, James G; Williams, Thomas; Hughes, Joseph; Aranday-Cortes, Elihu; Asamaphan, Patawee; Ashraf, Shirin; Balcazar, Carlos; Brunker, Kirstyn; Campbell, Alasdair; Carmichael, Stephen; Davis, Chris; Dewar, Rebecca; Gallagher, Michael D; Gunson, Rory; Hill, Verity; Ho, Antonia; Jackson, Ben; James, Edward; Jesudason, Natasha; Johnson, Natasha; McWilliam Leitch, E Carol; Li, Kathy; MacLean, Alasdair; Mair, Daniel; McAllister, David A; McCrone, John T; McDonald, Sarah E; McHugh, Martin P; Morris, A Keith; Nichols, Jenna; Niebel, Marc; Nomikou, Kyriaki; Orton, Richard J; O'Toole, Áine; Palmarini, Massimo; Parcell, Benjamin J; Parr, Yasmin A; Rambaut, Andrew; Rooke, Stefan; Shaaban, Sharif; Shah, Rajiv; Singer, Joshua B; Smollett, Katherine; Starinskij, Igor; Tong, Lily; Sreenu, Vattipally B; Wastnedge, Elizabeth; Holden, Matthew T G; Robertson, David L.

Nat Microbiol; 2021 Jan 27.

Artículo en Inglés | MEDLINE | ID: mdl-33504980

17.

Glycosylation changes as markers for the diagnosis and treatment of human disease.

Tong, Lily; Baskaran, Gautam; Jones, Mark B; Rhee, Jun Kyu; Yarema, Kevin J.

Biotechnol Genet Eng Rev; 20: 199-244, 2003.

Artículo en Inglés | MEDLINE | ID: mdl-14997853

18.

Systematic identification of conserved metabolites in GC/MS data for metabolomics and biomarker discovery.

Styczynski, Mark P; Moxley, Joel F; Tong, Lily V; Walther, Jason L; Jensen, Kyle L; Stephanopoulos, Gregory N.

Anal Chem; 79(3): 966-73, 2007 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-17263323

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