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1.

StrainHub: a phylogenetic tool to construct pathogen transmission networks.

de Bernardi Schneider, Adriano; Ford, Colby T; Hostager, Reilly; Williams, John; Cioce, Michael; Çatalyürek, Ümit V; Wertheim, Joel O; Janies, Daniel.

Bioinformatics; 36(3): 945-947, 2020 02 01.

Artículo en Inglés | MEDLINE | ID: mdl-31418766

2.

Addressing Ethical Challenges in US-Based HIV Phylogenetic Research.

Dawson, Liza; Benbow, Nanette; Fletcher, Faith E; Kassaye, Seble; Killelea, Amy; Latham, Stephen R; Lee, Lisa M; Leitner, Thomas; Little, Susan J; Mehta, Sanjay R; Martinez, Omar; Minalga, Brian; Poon, Art; Rennie, Stuart; Sugarman, Jeremy; Sweeney, Patricia; Torian, Lucia V; Wertheim, Joel O.

J Infect Dis; 222(12): 1997-2006, 2020 Nov 13.

Artículo en Inglés | MEDLINE | ID: mdl-32525980

3.

The Relationship Between the Human Immunodeficiency Virus-1 Transmission Network and the HIV Care Continuum in Los Angeles County.

Hassan, Adiba; De Gruttola, Victor; Hu, Yunyin W; Sheng, Zhijuan; Poortinga, Kathleen; Wertheim, Joel O.

Clin Infect Dis; 71(9): e384-e391, 2020 Dec 03.

Artículo en Inglés | MEDLINE | ID: mdl-32020172

4.

FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences.

Moshiri, Niema; Ragonnet-Cronin, Manon; Wertheim, Joel O; Mirarab, Siavash.

Bioinformatics; 35(11): 1852-1861, 2019 06 01.

Artículo en Inglés | MEDLINE | ID: mdl-30395173

5.

Phosphoserine acidic cluster motifs bind distinct basic regions on the µ subunits of clathrin adaptor protein complexes.

Singh, Rajendra; Stoneham, Charlotte; Lim, Christopher; Jia, Xiaofei; Guenaga, Javier; Wyatt, Richard; Wertheim, Joel O; Xiong, Yong; Guatelli, John.

J Biol Chem; 293(40): 15678-15690, 2018 10 05.

Artículo en Inglés | MEDLINE | ID: mdl-30135209

6.

HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens.

Kosakovsky Pond, Sergei L; Weaver, Steven; Leigh Brown, Andrew J; Wertheim, Joel O.

Mol Biol Evol; 35(7): 1812-1819, 2018 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-29401317

7.

Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc.

Chaillon, Antoine; Gianella, Sara; Lada, Steven M; Perez-Santiago, Josué; Jordan, Parris; Ignacio, Caroline; Karris, Maile; Richman, Douglas D; Mehta, Sanjay R; Little, Susan J; Wertheim, Joel O; Smith, Davey M.

J Virol; 92(3)2018 02 01.

Artículo en Inglés | MEDLINE | ID: mdl-29142136

8.

Social and Genetic Networks of HIV-1 Transmission in New York City.

Wertheim, Joel O; Kosakovsky Pond, Sergei L; Forgione, Lisa A; Mehta, Sanjay R; Murrell, Ben; Shah, Sharmila; Smith, Davey M; Scheffler, Konrad; Torian, Lucia V.

PLoS Pathog; 13(1): e1006000, 2017 01.

Artículo en Inglés | MEDLINE | ID: mdl-28068413

9.

HIV co-infection is associated with increased transmission risk in patients with chronic hepatitis C virus.

Ragonnet-Cronin, Manon; Hostager, Reilly; Hedskog, Charlotte; Osinusi, Ana; Svarovskaia, Eugenia; Wertheim, Joel O.

J Viral Hepat; 26(11): 1351-1354, 2019 11.

Artículo en Inglés | MEDLINE | ID: mdl-31194901

10.

Transmission Patterns in a Low HIV-Morbidity State - Wisconsin, 2014-2017.

Grande, Katarina M; Schumann, Casey L; Bañez Ocfemia, M Cheryl; Vergeront, James M; Wertheim, Joel O; Oster, Alexandra M.

MMWR Morb Mortal Wkly Rep; 68(6): 149-152, 2019 Feb 15.

Artículo en Inglés | MEDLINE | ID: mdl-30763299

11.

Growth of HIV-1 Molecular Transmission Clusters in New York City.

Wertheim, Joel O; Murrell, Ben; Mehta, Sanjay R; Forgione, Lisa A; Kosakovsky Pond, Sergei L; Smith, Davey M; Torian, Lucia V.

J Infect Dis; 218(12): 1943-1953, 2018 11 05.

Artículo en Inglés | MEDLINE | ID: mdl-30010850

12.

No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men.

Chaillon, Antoine; Nakazawa, Masato; Wertheim, Joel O; Little, Susan J; Smith, Davey M; Mehta, Sanjay R; Gianella, Sara.

J Virol; 91(21)2017 11 01.

Artículo en Inglés | MEDLINE | ID: mdl-28794047

13.

The Evolutionary Histories of Antiretroviral Proteins SERINC3 and SERINC5 Do Not Support an Evolutionary Arms Race in Primates.

Murrell, Ben; Vollbrecht, Thomas; Guatelli, John; Wertheim, Joel O.

J Virol; 90(18): 8085-9, 2016 09 15.

Artículo en Inglés | MEDLINE | ID: mdl-27356902

14.

Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes.

Madinda, Nadège F; Ehlers, Bernhard; Wertheim, Joel O; Akoua-Koffi, Chantal; Bergl, Richard A; Boesch, Christophe; Akonkwa, Dieudonné Boji Mungu; Eckardt, Winnie; Fruth, Barbara; Gillespie, Thomas R; Gray, Maryke; Hohmann, Gottfried; Karhemere, Stomy; Kujirakwinja, Deo; Langergraber, Kevin; Muyembe, Jean-Jacques; Nishuli, Radar; Pauly, Maude; Petrzelkova, Klara J; Robbins, Martha M; Todd, Angelique; Schubert, Grit; Stoinski, Tara S; Wittig, Roman M; Zuberbühler, Klaus; Peeters, Martine; Leendertz, Fabian H; Calvignac-Spencer, Sébastien.

J Virol; 90(19): 8531-41, 2016 10 01.

Artículo en Inglés | MEDLINE | ID: mdl-27440885

15.

A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies.

Bartlett, Sofia R; Wertheim, Joel O; Bull, Rowena A; Matthews, Gail V; Lamoury, Francois Mj; Scheffler, Konrad; Hellard, Margaret; Maher, Lisa; Dore, Gregory J; Lloyd, Andrew R; Applegate, Tanya L; Grebely, Jason.

J Viral Hepat; 24(5): 404-411, 2017 05.

Artículo en Inglés | MEDLINE | ID: mdl-27882678

16.

Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, California.

Mehta, Sanjay R; Murrell, Ben; Anderson, Christy M; Kosakovsky Pond, Sergei L; Wertheim, Joel O; Young, Jason A; Freitas, Lorri; Richman, Douglas D; Mathews, W Chris; Scheffler, Konrad; Little, Susan J; Smith, Davey M.

Clin Infect Dis; 63(1): 101-107, 2016 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-27174704

17.

RELAX: detecting relaxed selection in a phylogenetic framework.

Wertheim, Joel O; Murrell, Ben; Smith, Martin D; Kosakovsky Pond, Sergei L; Scheffler, Konrad.

Mol Biol Evol; 32(3): 820-32, 2015 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-25540451

18.

Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection.

Smith, Martin D; Wertheim, Joel O; Weaver, Steven; Murrell, Ben; Scheffler, Konrad; Kosakovsky Pond, Sergei L.

Mol Biol Evol; 32(5): 1342-53, 2015 May.

Artículo en Inglés | MEDLINE | ID: mdl-25697341

19.

Gene-wide identification of episodic selection.

Murrell, Ben; Weaver, Steven; Smith, Martin D; Wertheim, Joel O; Murrell, Sasha; Aylward, Anthony; Eren, Kemal; Pollner, Tristan; Martin, Darren P; Smith, Davey M; Scheffler, Konrad; Kosakovsky Pond, Sergei L.

Mol Biol Evol; 32(5): 1365-71, 2015 May.

Artículo en Inglés | MEDLINE | ID: mdl-25701167

20.

Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals.

Chin, Bum Sik; Chaillon, Antoine; Mehta, Sanjay R; Wertheim, Joel O; Kim, Gayeon; Shin, Hyoung-Shik; Smith, Davey M.

J Med Virol; 88(10): 1832-5, 2016 10.

Artículo en Inglés | MEDLINE | ID: mdl-26990771

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