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1.

The Alazami Syndrome-Associated Protein LARP7 Guides U6 Small Nuclear RNA Modification and Contributes to Splicing Robustness.

Hasler, Daniele; Meduri, Rajyalakshmi; Bak, Maciej; Lehmann, Gerhard; Heizinger, Leonhard; Wang, Xin; Li, Zhi-Tong; Sement, François M; Bruckmann, Astrid; Dock-Bregeon, Anne-Catherine; Merkl, Rainer; Kalb, Reinhard; Grauer, Eva; Kunstmann, Erdmute; Zavolan, Mihaela; Liu, Mo-Fang; Fischer, Utz; Meister, Gunter.

Mol Cell; 77(5): 1014-1031.e13, 2020 03 05.

Artículo en Inglés | MEDLINE | ID: mdl-32017898

2.

Roquin Suppresses the PI3K-mTOR Signaling Pathway to Inhibit T Helper Cell Differentiation and Conversion of Treg to Tfr Cells.

Essig, Katharina; Hu, Desheng; Guimaraes, Joao C; Alterauge, Dominik; Edelmann, Stephanie; Raj, Timsse; Kranich, Jan; Behrens, Gesine; Heiseke, Alexander; Floess, Stefan; Klein, Juliane; Maiser, Andreas; Marschall, Susan; Hrabe de Angelis, Martin; Leonhardt, Heinrich; Calkhoven, Cornelis F; Noessner, Elfriede; Brocker, Thomas; Huehn, Jochen; Krug, Anne B; Zavolan, Mihaela; Baumjohann, Dirk; Heissmeyer, Vigo.

Immunity; 47(6): 1067-1082.e12, 2017 12 19.

Artículo en Inglés | MEDLINE | ID: mdl-29246441

3.

Alternative cleavage and polyadenylation in health and disease.

Gruber, Andreas J; Zavolan, Mihaela.

Nat Rev Genet; 20(10): 599-614, 2019 10.

Artículo en Inglés | MEDLINE | ID: mdl-31267064

4.

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner, Markus; Landthaler, Markus; Burger, Lukas; Khorshid, Mohsen; Hausser, Jean; Berninger, Philipp; Rothballer, Andrea; Ascano, Manuel; Jungkamp, Anna-Carina; Munschauer, Mathias; Ulrich, Alexander; Wardle, Greg S; Dewell, Scott; Zavolan, Mihaela; Tuschl, Thomas.

Cell; 141(1): 129-41, 2010 Apr 02.

Artículo en Inglés | MEDLINE | ID: mdl-20371350

5.

Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation.

Ghosh, Souvik; Guimaraes, Joao C; Lanzafame, Manuela; Schmidt, Alexander; Syed, Afzal Pasha; Dimitriades, Beatrice; Börsch, Anastasiya; Ghosh, Shreemoyee; Mittal, Nitish; Montavon, Thomas; Correia, Ana Luisa; Danner, Johannes; Meister, Gunter; Terracciano, Luigi M; Pfeffer, Sébastien; Piscuoglio, Salvatore; Zavolan, Mihaela.

EMBO J; 39(18): e103922, 2020 Sep 15.

Artículo en Inglés | MEDLINE | ID: mdl-32812257

6.

Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs.

Liko, Dritan; Rzepiela, Andrzej; Vukojevic, Vanja; Zavolan, Mihaela; Hall, Michael N.

Proc Natl Acad Sci U S A; 117(3): 1524-1532, 2020 01 21.

Artículo en Inglés | MEDLINE | ID: mdl-31919282

7.

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing.

Herrmann, Christina J; Schmidt, Ralf; Kanitz, Alexander; Artimo, Panu; Gruber, Andreas J; Zavolan, Mihaela.

Nucleic Acids Res; 48(D1): D174-D179, 2020 01 08.

Artículo en Inglés | MEDLINE | ID: mdl-31617559

8.

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates.

Riba, Andrea; Di Nanni, Noemi; Mittal, Nitish; Arhné, Erik; Schmidt, Alexander; Zavolan, Mihaela.

Proc Natl Acad Sci U S A; 116(30): 15023-15032, 2019 07 23.

Artículo en Inglés | MEDLINE | ID: mdl-31292258

9.

Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.

Schönemann, Lars; Kühn, Uwe; Martin, Georges; Schäfer, Peter; Gruber, Andreas R; Keller, Walter; Zavolan, Mihaela; Wahle, Elmar.

Genes Dev; 28(21): 2381-93, 2014 Nov 01.

Artículo en Inglés | MEDLINE | ID: mdl-25301781

10.

Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms.

Gruber, Andreas J; Gypas, Foivos; Riba, Andrea; Schmidt, Ralf; Zavolan, Mihaela.

Nat Methods; 15(10): 832-836, 2018 10.

Artículo en Inglés | MEDLINE | ID: mdl-30202060

11.

Reply to 'A different perspective on alternative cleavage and polyadenylation'.

Gruber, Andreas J; Zavolan, Mihaela.

Nat Rev Genet; 21(1): 63-64, 2020 01.

Artículo en Inglés | MEDLINE | ID: mdl-31745294

12.

TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs.

Ustianenko, Dmytro; Pasulka, Josef; Feketova, Zuzana; Bednarik, Lukas; Zigackova, Dagmar; Fortova, Andrea; Zavolan, Mihaela; Vanacova, Stepanka.

EMBO J; 35(20): 2179-2191, 2016 10 17.

Artículo en Inglés | MEDLINE | ID: mdl-27647875

13.

Identification and consequences of miRNA-target interactions--beyond repression of gene expression.

Hausser, Jean; Zavolan, Mihaela.

Nat Rev Genet; 15(9): 599-612, 2014 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-25022902

14.

Conserved regulation of RNA processing in somatic cell reprogramming.

Kanitz, Alexander; Syed, Afzal Pasha; Kaji, Keisuke; Zavolan, Mihaela.

BMC Genomics; 20(1): 100, 2019 Jan 31.

Artículo en Inglés | MEDLINE | ID: mdl-30704403

15.

A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.

Gruber, Andreas J; Schmidt, Ralf; Gruber, Andreas R; Martin, Georges; Ghosh, Souvik; Belmadani, Manuel; Keller, Walter; Zavolan, Mihaela.

Genome Res; 26(8): 1145-59, 2016 08.

Artículo en Inglés | MEDLINE | ID: mdl-27382025

16.

Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction.

Rzepiela, Andrzej J; Ghosh, Souvik; Breda, Jeremie; Vina-Vilaseca, Arnau; Syed, Afzal P; Gruber, Andreas J; Eschbach, Katja; Beisel, Christian; van Nimwegen, Erik; Zavolan, Mihaela.

Mol Syst Biol; 14(8): e8266, 2018 08 27.

Artículo en Inglés | MEDLINE | ID: mdl-30150282

17.

High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq.

Gumienny, Rafal; Jedlinski, Dominik J; Schmidt, Alexander; Gypas, Foivos; Martin, Georges; Vina-Vilaseca, Arnau; Zavolan, Mihaela.

Nucleic Acids Res; 45(5): 2341-2353, 2017 03 17.

Artículo en Inglés | MEDLINE | ID: mdl-28031372

18.

Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans.

Subasic, Deni; Brümmer, Anneke; Wu, Yibo; Pinto, Sérgio Morgado; Imig, Jochen; Keller, Martin; Jovanovic, Marko; Lightfoot, Helen Louise; Nasso, Sara; Goetze, Sandra; Brunner, Erich; Hall, Jonathan; Aebersold, Ruedi; Zavolan, Mihaela; Hengartner, Michael O.

Genome Res; 25(11): 1680-91, 2015 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-26232411

19.

Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.

Omidi, Saeed; Zavolan, Mihaela; Pachkov, Mikhail; Breda, Jeremie; Berger, Severin; van Nimwegen, Erik.

PLoS Comput Biol; 13(7): e1005176, 2017 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-28753602

20.

An updated human snoRNAome.

Jorjani, Hadi; Kehr, Stephanie; Jedlinski, Dominik J; Gumienny, Rafal; Hertel, Jana; Stadler, Peter F; Zavolan, Mihaela; Gruber, Andreas R.

Nucleic Acids Res; 44(11): 5068-82, 2016 06 20.

Artículo en Inglés | MEDLINE | ID: mdl-27174936

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