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1.

Genome-wide CRISPR Screens Reveal Host Factors Critical for SARS-CoV-2 Infection.

Wei, Jin; Alfajaro, Mia Madel; DeWeirdt, Peter C; Hanna, Ruth E; Lu-Culligan, William J; Cai, Wesley L; Strine, Madison S; Zhang, Shang-Min; Graziano, Vincent R; Schmitz, Cameron O; Chen, Jennifer S; Mankowski, Madeleine C; Filler, Renata B; Ravindra, Neal G; Gasque, Victor; de Miguel, Fernando J; Patil, Ajinkya; Chen, Huacui; Oguntuyo, Kasopefoluwa Y; Abriola, Laura; Surovtseva, Yulia V; Orchard, Robert C; Lee, Benhur; Lindenbach, Brett D; Politi, Katerina; van Dijk, David; Kadoch, Cigall; Simon, Matthew D; Yan, Qin; Doench, John G; Wilen, Craig B.

Cell; 184(1): 76-91.e13, 2021 01 07.

Artículo en Inglés | MEDLINE | ID: mdl-33147444

2.

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion.

van Dijk, David; Sharma, Roshan; Nainys, Juozas; Yim, Kristina; Kathail, Pooja; Carr, Ambrose J; Burdziak, Cassandra; Moon, Kevin R; Chaffer, Christine L; Pattabiraman, Diwakar; Bierie, Brian; Mazutis, Linas; Wolf, Guy; Krishnaswamy, Smita; Pe'er, Dana.

Cell; 174(3): 716-729.e27, 2018 07 26.

Artículo en Inglés | MEDLINE | ID: mdl-29961576

3.

Uncovering axes of variation among single-cell cancer specimens.

Chen, William S; Zivanovic, Nevena; van Dijk, David; Wolf, Guy; Bodenmiller, Bernd; Krishnaswamy, Smita.

Nat Methods; 17(3): 302-310, 2020 03.

Artículo en Inglés | MEDLINE | ID: mdl-31932777

4.

Exploring single-cell data with deep multitasking neural networks.

Amodio, Matthew; van Dijk, David; Srinivasan, Krishnan; Chen, William S; Mohsen, Hussein; Moon, Kevin R; Campbell, Allison; Zhao, Yujiao; Wang, Xiaomei; Venkataswamy, Manjunatha; Desai, Anita; Ravi, V; Kumar, Priti; Montgomery, Ruth; Wolf, Guy; Krishnaswamy, Smita.

Nat Methods; 16(11): 1139-1145, 2019 11.

Artículo en Inglés | MEDLINE | ID: mdl-31591579

5.

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.

van Dijk, David; Sharon, Eilon; Lotan-Pompan, Maya; Weinberger, Adina; Segal, Eran; Carey, Lucas B.

Genome Res; 27(1): 87-94, 2017 01.

Artículo en Inglés | MEDLINE | ID: mdl-27965290

6.

Novel Toxin-Antitoxin Module SlvT-SlvA Regulates Megaplasmid Stability and Incites Solvent Tolerance in Pseudomonas putida S12.

Kusumawardhani, Hadiastri; van Dijk, David; Hosseini, Rohola; de Winde, Johannes H.

Appl Environ Microbiol; 86(13)2020 06 17.

Artículo en Inglés | MEDLINE | ID: mdl-32358012

7.

Development and Validation of the Quick COVID-19 Severity Index: A Prognostic Tool for Early Clinical Decompensation.

Haimovich, Adrian D; Ravindra, Neal G; Stoytchev, Stoytcho; Young, H Patrick; Wilson, Francis P; van Dijk, David; Schulz, Wade L; Taylor, R Andrew.

Ann Emerg Med; 76(4): 442-453, 2020 10.

Artículo en Inglés | MEDLINE | ID: mdl-33012378

8.

The reproducibility of skeletal muscle signal intensity on routine magnetic resonance imaging in Crohn's disease.

Spooren, Corinne E G M; Lodewick, Toine M; Beelen, Evelien M J; van Dijk, David P J; Bours, Martijn J L; Haans, Jeoffrey J; Masclee, Ad A M; Pierik, Marie J; Bakers, Frans C H; Jonkers, Daisy M A E.

J Gastroenterol Hepatol; 35(11): 1902-1908, 2020 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-32267571

9.

Comment on "Pressure enhancement in carbon nanopores: a major confinement effect" by Y. Long, J. C. Palmer, B. Coasne, M. Sliwinska-Bartkowiak and K. E. Gubbins, Phys. Chem. Chem. Phys., 2011, 13, 17163.

van Dijk, David.

Phys Chem Chem Phys; 2020 Apr 27.

Artículo en Inglés | MEDLINE | ID: mdl-32338273

10.

Low thoracic muscle radiation attenuation is associated with postoperative pneumonia following partial hepatectomy for colorectal metastasis.

van der Kroft, Gregory; van Dijk, David P J; Rensen, Sander S; Van Tiel, Frank H; de Greef, Bianca; West, Malcolm; Ostridge, Kris; Dejong, Cornelis H C; Neumann, Ulf P; Olde Damink, Steven W M.

HPB (Oxford); 2019 Nov 14.

Artículo en Inglés | MEDLINE | ID: mdl-31735648

11.

A novel human cell culture model to study visceral smooth muscle phenotypic modulation in health and disease.

Vaes, Rianne D W; van den Berk, Linda; Boonen, Bas; van Dijk, David P J; Olde Damink, Steven W M; Rensen, Sander S.

Am J Physiol Cell Physiol; 315(4): C598-C607, 2018 10 01.

Artículo en Inglés | MEDLINE | ID: mdl-30044660

12.

Noise in gene expression is coupled to growth rate.

Keren, Leeat; van Dijk, David; Weingarten-Gabbay, Shira; Davidi, Dan; Jona, Ghil; Weinberger, Adina; Milo, Ron; Segal, Eran.

Genome Res; 25(12): 1893-902, 2015 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-26355006

13.

The effect of cause, timing, kidney function recovery, and recurrent events on the prognosis of acute kidney injury in kidney transplant recipients.

van Dijk, Tuvya Y; Rahamimov, Ruth; Chagnac, Avry; van Dijk, David J; Mor, Eytan; Shlomai, Amir; Rozen-Zvi, Benaya.

Clin Transplant; 32(10): e13398, 2018 10.

Artículo en Inglés | MEDLINE | ID: mdl-30175412

14.

Myosteatosis predicts survival after surgery for periampullary cancer: a novel method using MRI.

van Dijk, David P J; Bakers, Frans C H; Sanduleanu, Sebastian; Vaes, Rianne D W; Rensen, Sander S; Dejong, Cornelis H C; Beets-Tan, Regina G H; Olde Damink, Steven W M.

HPB (Oxford); 20(8): 715-720, 2018 08.

Artículo en Inglés | MEDLINE | ID: mdl-29519644

15.

Probing the effect of promoters on noise in gene expression using thousands of designed sequences.

Sharon, Eilon; van Dijk, David; Kalma, Yael; Keren, Leeat; Manor, Ohad; Yakhini, Zohar; Segal, Eran.

Genome Res; 24(10): 1698-706, 2014 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-25030889

16.

ERAS: Improving outcome in the cachectic HPB patient.

van Dijk, David P J; van Woerden, Victor; Cakir, Hamit; den Dulk, Marcel; Olde Damink, Steven W M; Dejong, Cornelis H C.

J Surg Oncol; 116(5): 617-622, 2017 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-28767125

17.

Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise.

Dadiani, Maya; van Dijk, David; Segal, Barak; Field, Yair; Ben-Artzi, Gil; Raveh-Sadka, Tali; Levo, Michal; Kaplow, Irene; Weinberger, Adina; Segal, Eran.

Genome Res; 23(6): 966-76, 2013 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-23403035

18.

Promoter sequence determines the relationship between expression level and noise.

Carey, Lucas B; van Dijk, David; Sloot, Peter M A; Kaandorp, Jaap A; Segal, Eran.

PLoS Biol; 11(4): e1001528, 2013.

Artículo en Inglés | MEDLINE | ID: mdl-23565060

19.

A New Cutoff for Abnormal Proteinuria in Diabetes Mellitus Patients: Relationship to Albuminuria.

Erman, Orit; Erman, Arie; Vodonos, Alina; Gafter, Uzi; van Dijk, David J.

Isr Med Assoc J; 18(7): 418-421, 2016 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-28471565

20.

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.