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1.
Physiol Mol Biol Plants ; 26(3): 433-444, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-32205921

RESUMEN

Basic leucine zipper motif (bZIP) transcription factors (TFs) are involved in plant growth regulation, development, and environmental stress responses. These genes have been well characterized in model plants. In current study, a genome-wide analysis of bZIP genes was performed in Gossypium raimondii and Gossypium arboreum taking Arabidopsis thaliana as a reference genome. In total, 85 members of G. raimondii and 87 members of G. arboreum were identified and designated as GrbZIPs and GabZIPs respectively. Phylogenetic analysis clustered bZIP genes into 11 subgroups (A, B, C, D, F, G, H, I, S and X). Gene structure analysis to find the intro-exon structures revealed 1-14 exons in both species. The maximum number of introns were present in subgroup G and D while genes in subgroup S were intron-less except GrbZIP78, which is a unique characteristic as compared to other groups. Results of motif analysis predicted that all three species share a common bZIP motif. A detailed comparison of bZIPs gene distribution on chromosomes has shown a diverse arrangement of genes in both cotton species. Moreover, the functional similarity with orthologs was also predicted. The findings of this study revealed close similarity in gene structure of both cotton species and diversity in gene distribution on chromosomes. This study supports the divergence of both species from the common ancestor and later diversity in gene distribution on chromosomes due to evolutionary changes. Additionally, this work will facilitate the functional characterization of bZIP genes in cotton. Outcomes of this study represent foundation research on the bZIP TFs family in cotton and as a reference for other crops.

2.
Int J Mol Sci ; 20(9)2019 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-31052464

RESUMEN

Salinity is not only a major environmental factor which limits plant growth and productivity, but it has also become a worldwide problem. However, little is known about the genetic basis underlying salt tolerance in cotton. This study was carried out to identify marker-trait association signals of seven salt-tolerance-related traits and one salt tolerance index using association analysis for 215 accessions of Asiatic cotton. According to a comprehensive index of salt tolerance (CIST), 215 accessions were mainly categorized into four groups, and 11 accessions with high salinity tolerance were selected for breeding. Genome-wide association studies (GWAS) revealed nine SNP rich regions significantly associated with relative fresh weight (RFW), relative stem length (RSL), relative water content (RRWC) and CIST. The nine SNP rich regions analysis revealed 143 polymorphisms that distributed 40 candidate genes and significantly associated with salt tolerance. Notably, two SNP rich regions on chromosome 7 were found to be significantly associated with two salinity related traits, RFW and RSL, by the threshold of -log10P ≥ 6.0, and two candidate genes (Cotton_A_37775 and Cotton_A_35901) related to two key SNPs (Ca7_33607751 and Ca7_77004962) were possibly associated with salt tolerance in G. arboreum. These can provide fundamental information which will be useful for future molecular breeding of cotton, in order to release novel salt tolerant cultivars.


Asunto(s)
Gossypium/genética , Polimorfismo de Nucleótido Simple , Tolerancia a la Sal , Genoma de Planta , Gossypium/fisiología
3.
Am J Bot ; 105(10): 1771-1780, 2018 10.
Artículo en Inglés | MEDLINE | ID: mdl-30324664

RESUMEN

PREMISE OF THE STUDY: Plant phenology is a critical trait, as the timings of phenophases such as budburst, leafout, flowering, and fruiting, are important to plant fitness. Despite much study about when individual phenophases occur and how they may shift with climate change, little is known about how multiple phenophases relate to one another across an entire growing season. We test the extent to which early phenological stages constrain later ones, throughout a growing season, across 25 angiosperm tree species. METHODS: We observed phenology (budburst, leafout, flowering, fruiting, and senescence) of 118 individual trees across 25 species, from April through December 2015. KEY RESULTS: We found that early phenological events weakly constrain most later events, with the strongest constraints seen between consecutive stages. In contrast, interphase duration was a much stronger predictor of phenology, especially for reproductive events, suggesting that the development time of flowers and fruits may constrain the phenology of these events. CONCLUSIONS: Much of the variation in later phenological events can be explained by the timing of earlier events and by interphase durations. This highlights that a shift in one phenophase may often have cascading effects on later phases. Accurate forecasts of climate change impacts should therefore include multiple phenophases within and across years.


Asunto(s)
Cambio Climático , Clima , Árboles/crecimiento & desarrollo , Tiempo (Meteorología) , Boston , Flores/crecimiento & desarrollo , Reproducción , Estaciones del Año
4.
BMC Genet ; 17: 54, 2016 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-26993467

RESUMEN

BACKGROUND: Trehalose (a-D-glucopyranosyl a-D-glucopyranoside) is a nonreducing disaccharide and is widely distributed in bacteria, fungi, algae, plants and invertebrates. In the study, the identification of trehalose-6-phosphate synthase (TPS) genes stress-related in cotton, and the genetic structure analysis and molecular evolution analysis of TPSs were conducted with bioinformatics methods, which could lay a foundation for further research of TPS functions in cotton. RESULTS: The genome information of Gossypium raimondii (group D), G. arboreum L. (group A), and G. hirsutum L. (group AD) was used in the study. Fifty-three TPSs were identified comprising 15 genes in group D, 14 in group A, and 24 in group AD. Bioinformatics methods were used to analyze the genetic structure and molecular evolution of TPSs. Real-time PCR analysis was performed to investigate the expression patterns of gene family members. All TPS family members in cotton can be divided into two subfamilies: Class I and Class II. The similarity of the TPS sequence is high within the same species and close within their family relatives. The genetic structures of two TPS subfamily members are different, with more introns and a more complicated gene structure in Class I. There is a TPS domain(Glyco transf_20) at the N-terminal in all TPS family members and a TPP domain(Trehalose_PPase) at the C-terminal in all except GrTPS6, GhTPS4, and GhTPS9. All Class II members contain a UDP-forming domain. The responses to environmental stresses showed that stresses could induce the expression of TPSs but the expression patterns vary with different stresses. CONCLUSIONS: The distribution of TPSs varies with different species but is relatively uniform on chromosomes. Genetic structure varies with different gene members, and expression levels vary with different stresses and exhibit tissue specificity. The upregulated genes in upland cotton TM-1 is significantly more than that in G. raimondii and G. arboreum L. Shixiya 1.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Glucosiltransferasas/genética , Gossypium/genética , Familia de Multigenes , Proteínas de Plantas/genética , Evolución Molecular , Gossypium/enzimología , Filogenia , Reacción en Cadena en Tiempo Real de la Polimerasa , Alineación de Secuencia
5.
Ann Bot ; 118(3): 393-9, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27328683

RESUMEN

BACKGROUND: Genomic research depends upon access to DNA or tissue collected and preserved according to high-quality standards. At present, the collections in most natural history museums do not sufficiently address these standards, making them often hard or impossible to use for whole-genome sequencing or transcriptomics. In response to these challenges, natural history museums, herbaria, botanical gardens and other stakeholders have started to build high-quality biodiversity biobanks. Unfortunately, information about these collections remains fragmented, scattered and largely inaccessible. Without a central registry or even an overview of relevant institutions, it is difficult and time-consuming to locate the needed samples. SCOPE: The Global Genome Biodiversity Network (GGBN) was created to fill this vacuum by establishing a one-stop access point for locating samples meeting quality standards for genome-scale applications, while complying with national and international legislations and conventions. Increased accessibility to genomic samples will further genomic research and development, conserve genetic resources, help train the next generation of genome researchers and raise the visibility of biodiversity collections. Additionally, the availability of a data-sharing platform will facilitate identification of gaps in the collections, thereby empowering targeted sampling efforts, increasing the breadth and depth of preservation of genetic diversity. The GGBN is rapidly growing and currently has 41 members. The GGBN covers all branches of the Tree of Life, except humans, but here the focus is on a pilot project with emphasis on 'harvesting' the Tree of Life for vascular plant taxa to enable genome-level studies. CONCLUSION: While current efforts are centred on getting the existing samples of all GGBN members online, a pilot project, GGI-Gardens, has been launched as proof of concept. Over the next 6 years GGI-Gardens aims to add to the GGBN high-quality genetic material from at least one species from each of the approx. 460 vascular plant families and one species from half of the approx. 15 000 vascular plant genera.


Asunto(s)
Biodiversidad , Ecosistema , Genómica , Plantas/genética , Conservación de los Recursos Naturales , Jardines , Humanos , Proyectos Piloto
6.
Oecologia ; 182(1): 243-52, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27167225

RESUMEN

The adoption of exotic plants by indigenous herbivores in the region of introduction can be influenced by numerous factors. A botanical garden in Western Siberia was used to test various hypotheses on the adaptation of indigenous phyllophagous insects to exotic plants invasions, focusing on two feeding guilds, external leaf chewers and leaf miners. A total of 150 indigenous and exotic woody plant species were surveyed for insect damage, abundance and species richness. First, exotic woody plants were much less damaged by chewers and leaf miners than native plants, and the leaf miners' species richness was much lower on exotic than native plants. Second, exotic woody plants having a congeneric species in the region of introduction were more damaged by chewers and hosted a more abundant and species-rich community of leaf miners than plants without native congeneric species. Third, damage by chewers significantly increased with the frequency of planting of exotic host plants outside the botanical garden, and leaf miners' abundance and species richness significantly increased with residence time in the garden. Finally, no significant relationship was found between insect damage or abundance and the origin of the exotic plants. Besides the ecological implications of the results, this study also illustrates the potential of botanical gardens to test ecological hypotheses on biological invasions and insect-plant interactions on a large set of plant species.


Asunto(s)
Ecosistema , Jardines , Animales , Ecología , Insectos , Plantas
7.
Oecologia ; 182(3): 779-88, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-27558697

RESUMEN

The realized host range of herbivores is expected to increase with herbivore population density. Theory also predicts that trait similarity and phylogenetic relatedness between native and exotic plants is expected to increase the susceptibility of introduced plants to feeding by native herbivores. Whether the ability of native herbivores to extend their host range to introduced species is density dependent is still unknown. We addressed this question by monitoring pine processionary moth (PPM, Thaumetopoea pityocampa) attacks during nine consecutive years on 41 pine species (8 native and 33 introduced) planted in an arboretum. The survey encompassed latent and outbreak periods. A total of 28 pine species were attacked by PPM. There was no difference in the probability of attack between native and introduced pine species. Host range increased and was more phylogenetically clustered during outbreak than latent periods. When population density increased, PPM expanded its diet breadth by attacking introduced pine species that were closely related to native hosts. This study demonstrates the density dependence of host range expansion in a common pine herbivore. Importantly, it supports the idea that the degree of phylogenetic proximity between host species can be a better predictor of attacks than the introduction status, which may help to predict the outcomes of new plant-herbivore interactions.


Asunto(s)
Especificidad del Huésped , Filogenia , Animales , Herbivoria , Especies Introducidas , Mariposas Nocturnas
8.
Pathogens ; 11(6)2022 May 27.
Artículo en Inglés | MEDLINE | ID: mdl-35745478

RESUMEN

The family Rhabdoviridae contain important human and mammalian pathogens that are vectored by different arthropod species. The ground supernatants of mosquitoes were used to inoculate in BHK-21 and C6/36 cells for virus isolation. Then, the viral complete genome sequence was obtained and used for phylogenetic analysis. In this study, we observed a cytopathic effect (CPE) in mosquito cells (C6/36) and rod-like virion after inoculating a pool of Armigeres subalbatus samples collected in Shanxi Province, China, in 2019 (SX1916). Meta-transcriptomics sequencing revealed the presence of two distinctive rhabdoviruses with similar abundance levels, namely, Shanxi Armigeres subalbatus rhabdovirus (SXARV) and Shanxi Arboretum virus (SXABTV). Despite the fact that the SXARV genome (9590 nt) was much shorter than that of SXABTV (11,480 nt), both belonged to the Almendravirus group within Rhabdoviridae whose genomes encoded five proteins (N, P, M, G, and L) and a small hydrophobin (U1) and the difference in lengths is mainly caused by a substantially shorter N protein encoded by SXARV. On the phylogenetic tree, SXABTV was closely related (90.7% amino acid identity at L protein) with the Arboretum virus isolated from Psorophora albigenu mosquitoes in Peru in 2014, whereas SXARV was distantly related to Rio Chico virus (63.3% amino acid identity), a genetic distance large enough to be defined as a new species within Rhabdoviridae. Collectively, we report a simultaneous isolation of two related rhabdoviruses from Armigeres subalbatus that marked the circulation of almendraviruses in Shanxi, China.

9.
Saudi J Biol Sci ; 27(7): 1788-1796, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32565697

RESUMEN

In the current investigation, the active principles of the methanol extracts of Rhododendron arboreum leaves (MEL) and flowers (MEF) were investigated with the help of ultra-high performance liquid chromatography (UHPLC), amino acid analyzer and gas chromatography mass spectrometry (GC-MS). UHPLC revealed different polyphenols present in the extracts. GC-MS identified 20 phytochemicals in leaves and 17 in the flowers, whereas, amino acid analyzer confirmed 11 amino acids in leaves and 10 in the flowers. The extracts were subjected to the investigation of biological activity through analysis of antioxidant activity in different in vitro assays, antimutagenic activity in Ames assay and cancer cell growth inhibition activity by MTT (3-4,5 dimethylthiazol-2,5 diphenyltetrazolium bromide) assay. MEL showed higher antioxidant activity in lipid peroxidation inhibition assay (95.32 ± 0.37%) than MEF (77.09 ± 4.17%) with IC50103.6 µg/ml for MEL and 271.17 µg/ml for MEF. In nitric oxide scavenging assay, an activity of 94.46 ± 0.32% (IC50 150.13) was observed in MEF followed by 83.71 ± 0.74% (IC50 179.52) in MEL. The antimutagenic activity of both the extracts was evaluated against sodium azide, 4-nitro-O-phenylenediamine and 2-aminofluorene mutagens in TA-98 and TA-100 strains of Salmonella typhimurium. The analysis was carried out using pre- and co-incubation modes. However, both extracts were observed to possess considerable antimutagenic activity against different known mutagens, flowers came out to be more effective than the leaves in terms of % inhibition. The extracts also exhibited significant cancer cell growth inhibition activity, when tested against 3 cancer cell lines namely, Human cervical cancer cell line (HeLa), Breast cancer cell line (MCF7) and Lung cancer cell line (A549). In case of HeLa and A549, MEL showed higher activity of 64.62 ± 2.65 and 75.08 ± 1.68% as compared to 53.11 ± 2.84 and 45.92 ± 2.43% in MEL, respectively. The EC50 values for MEL in HeLa and A549 were noted to be 232.76 and 155.38 µg/ml, respectively, whereas, MEF had EC50 of 395.50 µg/ml in HeLa and 660.26 µg/ml in A549. Further, MEF showed higher cytotoxicity in MCF7 cell line (84.93 ± 1.17%) followed by the MEL (73.57 ± 1.27%) with EC50 value of 95.16 µg/ml for MEF followed by 172.19 µg/ml for MEL. The biological activities of the extracts can be attributed to the phyto-constituents identified by sophisticated instruments. The biological activities of the extracts can be attributed to the active principles identified by sophisticated instruments.

10.
Gene ; 709: 36-47, 2019 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-30898717

RESUMEN

Cotton fiber initiation is the first step in fiber development, and it determines the yield. Here, genome-wide transcriptome profiling of Gossypium arboreum was performed to determine the molecular basis of cotton fiber initiation. A comparison of the transcriptomes of fiber-bearing ovules at -0.5, 0, 0.5, 1, 1.5, 2, 2.5 and 3 d post-anthesis detected 12,049 differentially expressed genes that mainly participated in ribosome, carbon metabolism and amino acid biosynthesis pathways. Genes encoding alcohol dehydrogenase 1 and hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase, involving in fatty acid degradation and flavonoid biosynthesis, were enriched. Furthermore, 1049 differentially expressed transcription factors were identified. Among these, 17 were trihelix family transcription factors, which play important roles in plant development and responses to biotic and abiotic stresses. In total, 52 full-length trihelix genes, named as GaGTs, were identified in G. arboreum and located in 12 of the 13 cotton chromosomes. Transcriptomic data and a quantitative real-time PCR analysis indicated that several GaGTs were significantly induced during fiber initiation in G. arboreum. Thus, the genome-wide comprehensive analysis of gene expression in G. arboreum fiber initiation will serve as a useful resource for unraveling the functions of specific genes. The phylogenetic relationships and expression analyses of the G. arboreum trihelix genes established a solid foundation for future comprehensive functional analyses of the GaGTs.


Asunto(s)
Fibra de Algodón , Gossypium/crecimiento & desarrollo , Gossypium/genética , Secuencias Hélice-Asa-Hélice , Factores de Transcripción/genética , Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Genoma de Planta , Estudio de Asociación del Genoma Completo , Secuencias Hélice-Asa-Hélice/genética , Familia de Multigenes , Filogenia , Proteínas de Plantas/química , Proteínas de Plantas/genética , Factores de Transcripción/química
11.
PeerJ ; 7: e7444, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31435491

RESUMEN

The red-eared slider turtle (Trachemys scripta elegans; RES) is often considered one of the world's most invasive species. Results from laboratory and mesocosm experiments suggest that introduced RES outcompete native turtles for key ecological resources, but such experiments can overestimate the strength of competition. We report on the first field experiment with a wild turtle community, involving introduced RES and a declining native species of conservation concern, the western pond turtle (Emys marmorata; WPT). Using a before/after experimental design, we show that after removing most of an introduced RES population, the remaining RES dramatically shifted their spatial basking distribution in a manner consistent with strong intraspecific competition. WPT also altered their spatial basking distribution after the RES removal, but in ways inconsistent with strong interspecific competition. However, we documented reduced levels of WPT basking post-removal, which may reflect a behavioral shift attributable to the lower density of the turtle community. WPT body condition also increased after we removed RES, consistent with either indirect or direct competition between WPT and RES and providing the first evidence that RES can compete with a native turtle in the wild. We conclude that the negative impacts on WPT basking by RES in natural contexts are more limited than suggested by experiments with captive turtles, although wild WPT do appear to compete for food with introduced RES. Our results highlight the importance of manipulative field experiments when studying biological invasions, and the potential value of RES removal as a management strategy for WPT.

12.
Artículo en Inglés | MEDLINE | ID: mdl-30309039

RESUMEN

Mental health problems have become one of the leading causes of disease burden worldwide. This study used qualitative mixed methods including in-situ 'being and doing' activities with participants, interviews, and participant observations to explore participant's experiences of a multi-visit nature-based intervention at Westonbirt Arboretum in England. The research found that three engagement types: (1) social, (2) woodland craft, and (3) creative and sensory, provided a meaningful programme to engage those with mental health, addiction, autism and behavioural problems. These types of engagement conferred a wide range of well-being benefits on participants. The study highlights key elements of the programme that were effective including the importance of repeat visits to nature to enable familiarity, using creative, sensory and craft activities, creating a supportive environment, involving the volunteers, and understanding the needs of participants and the organisations that work with them. The research suggests that nature-based programmes can be designed to be flexible and adaptable to meet the needs of participants with mental health and behavioural problems. Small numbers of participants can be involved in an intensive and immersive way that encourages an emotional affinity with nature. Inclusive and supportive programmes are particularly important for those who are vulnerable, as they are less likely to engage with nature than the wider population.


Asunto(s)
Terapias Complementarias , Trastornos Mentales/terapia , Naturaleza , Adolescente , Adulto , Inglaterra , Femenino , Humanos , Masculino , Persona de Mediana Edad , Problema de Conducta , Voluntarios , Adulto Joven
13.
Bot Stud ; 58(1): 36, 2017 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-28861854

RESUMEN

BACKGROUND: Abandoned human-modified forests are refuges for remnant biodiversity. However, there are very few studies on the biodiversity and regeneration of native species in human-modified forests which are rich in exotic trees. Our research aim is to evaluate the regeneration status and biodiversity of two adjacent human-modified forests. The two forests have distinct overstorey exotic species richness prior to abandonment: one is an exotic tree plantation low in species richness, and the other is an exotic arboretum high in species richness. The original management practices of the two forests have been neglected for more than 20 years. A primary forest was selected as a reference forest to compare their diversity and regeneration status. We asked: (1) Is there a structural difference among the three forests? (2) What are the proportions of native saplings in the human-modified forests? (3) Are the introduced exotic species able to naturalize? RESULTS: We recorded 1316 individuals from 88 species, belonging to 69 genera and 34 families in the three forests [each sampled 16 quadrats (10 m × 5 m)]. Both human-modified forests were similar in their height structure, diameter structure, and sapling density, but differed in species diversity (characterized by rarefaction curves) and floristic composition (indicated by a quantitative similarity index). In the arboretum, only 50% of the sapling individuals were native. Surprisingly, when sampling efforts were standardized, the arboretum had higher native sapling species richness than the exotic species-poor plantation. Moreover, both human-modified forests had conserved a few rare and endemic species. Nevertheless, some exotic species in the arboretum had escaped to the nearby plantation. CONCLUSIONS: After 20 years of abandonment, the two human-modified forests had converged in structure, but not in diversity patterns of native saplings. This could be due to that the diversity of exotic overstorey composition can influence the natural regeneration of understorey plants. Our study also raised concerns about conserving native species and managing naturalized exotic species in these human-modified forests.

14.
Methods Mol Biol ; 1361: 375-89, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26483033

RESUMEN

Comparative functional genomics aims to measure and compare genome-wide functional data such as transcriptomes, proteomes, and epigenomes across multiple species to study the conservation and divergence patterns of such quantitative measurements. However, computational methods to systematically compare these quantitative genomic profiles across multiple species are in their infancy. We developed Arboretum, a novel algorithm to identify modules of co-expressed genes and trace their evolutionary history across multiple species from a complex phylogeny. To interpret the results from Arboretum we developed several measures to examine the extent of conservation and divergence in modules and their relationship to species lifestyle, cis-regulatory elements, and gene duplication. We applied Arboretum to study the evolution of modular transcriptional regulatory programs controlling transcriptional response to different environmental stresses in the yeast Ascomycota phylogeny. We found that modules of similar patterns of expression captured the transcriptional responses to different stresses across species; however, the genes exhibiting these patterns were not the same. Divergence in module membership was associated with changes in lifestyle and specific clades and that gene duplication was a major factor contributing to the divergence of module membership.


Asunto(s)
Biología Computacional/métodos , Redes Reguladoras de Genes , Filogenia , Factores de Transcripción/genética , Algoritmos , Duplicación de Gen/genética , Regulación Fúngica de la Expresión Génica , Saccharomyces cerevisiae/clasificación , Saccharomyces cerevisiae/genética
15.
Mycobiology ; 43(3): 239-57, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26539040

RESUMEN

We conducted five times surveys, in June, September and October in 2012; June and September 2013, to catalog the mushroom flora in Ulleung-gun, Republic of Korea. More than 400 specimens were collected, and 317 of the specimens were successfully sequenced using the ribosomal DNA internal transcribed spacer barcode marker. We also surveyed the morphological characteristics of the sequenced specimens. The specimens were classified into 2 phyla, 7 classes, 21 orders, 59 families, 122 genera, and 221 species, and were deposited in the herbarium of Korea National Arboretum. Among the collected species, 72% were saprophytic, 25% were symbiotic, and 3% were parasitic. The most common order was Agaricales (189 specimens, 132 species), followed by Polyporales (47 specimens, 27 species), Russulales (31 specimens, 22 species), Boletales (10 specimens, 7 species), and so on. Herein, we also reported the first Bovista species in Korea, which was collected from Dokdo, the far-eastern island of Korea.

16.
Mycobiology ; 38(2): 81-8, 2010 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23956632

RESUMEN

A total of 560 higher fungal specimens were collected in the Gwangneung Forest from May to November of 2007. All of the collected specimens were identified; categorized into 8 classes, 19 orders, 69 families, 165 genera, and 296 species; and deposited in the herbarium of the Korea National Arboretum. Of the identified specimens, 8 were confirmed as being new to Korea and are as follows: Cudoniella acicularis (Korean name: Jeombakisotugubeoseos), Discina ancilis (Korean name: Jomwonbanbeoseos), Helvella costifera (Korean name: Galbidaeanjangbeoseos), Entoloma cephalotrichum (Korean name: Jomkkaltaejiweodaebeoseos), Mycena leptocephala (Korean name: Yalbeungatweojuleumbeoseos), Naematoloma gracile (Korean name: Ganeundaegaeambeoseos), Sistotrema octosporum (Korean name: Hweosekcheonbeoseos), and Hydnellum peckii (Korean name: Pijeopkkaltaegibeoseos).

17.
Electron. j. biotechnol ; Electron. j. biotechnol;13(5): 3-4, Sept. 2010. ilus, tab
Artículo en Inglés | LILACS | ID: lil-591885

RESUMEN

Exploring genetic variation in Gossypium arboreum L. germplasm is useful as it contains many important genes conferring resistance to different stresses. In limited earlier studies, low level of genetic diversity was found by using conventional DNA marker systems which may impede future genome mapping studies. In the present investigation, we explored the extent of Single Nucleotide Polymorphisms (SNP) among 30 conserved regions of Expressed Sequence Tags (EST) of low copy genes between two genotypes of G. arboreum. A total of 27 SNPs including 21 substitutions and 6 Insertions and deletions (Indels) in 7804 bp were found between these genotypes with a frequency of one SNP per 371 bp and one Indel after every 1300 bp. Out of these SNPs, 52 percent were transitions, whilst 48 percent SNPs were transversion. In conclusion, SNPs are expedient markers that can explore polymorphism in highly conserved sequences where other markers are not effective.


Asunto(s)
Gossypium/genética , Polimorfismo de Nucleótido Simple , Secuencia Conservada , Etiquetas de Secuencia Expresada , Marcadores Genéticos , Polimorfismo Genético
18.
Rev. bras. farmacogn ; 16(2): 246-251, abr.-jun. 2006. tab
Artículo en Portugués | LILACS | ID: lil-570987

RESUMEN

Foi determinada a composição química dos óleos essenciais de 3 espécies do gênero Piper coletadas em Matas de Galeria no Cerrado, e comparada com composição dos óleos das mesmas espécies oriundas da Mata Atlântica. A composição química do óleo de Piper arboreum subsp arboreum, P. dilatatum e P. hispidum foi determinada por cromatografia gasosa em coluna capilar HP-5 e espectrometria de massas. As três espécies do Cerrado apresentaram predominância de sesquiterpenos. Piper arboreum subsp arboreum apresentou como constituintes majoritários biciclogermacreno (12,1 por cento), 10-epi-g-eudesmol (11,6 por cento) e óxido de cariofileno (10,1 por cento). Em P. dilatatum os constituintes em maior quantidade foram cis-b-ocimeno (19,6 por cento) e b-cariofileno (11,3 por cento) e em P. hispidum foram b-pineno (19,7 por cento), a-pineno (9,0 por cento).


The chemical composition of the essential oils of three species of Piper, namely Piper arboretum subsp arboretum, P. dilatatum and P. hispidum, from the Cerrado (Brazillian savannah) was determined and compared with the composition of the oils from the same species collected in the Atlantic Rain Forest. Analyses were performed by gas chromatography and mass spectrometry using a HP5 capillary column. Sesquiterpenes were the major constituents of the oils. In P. arboreum subsp arboreum, bicyclogermacre (12.1 percent), 10-epi-g-eudesmol (11.6 percent) and caryophyllene oxide (10.1 percent) were the main constituents. For P. dilatatum cis-b-ocimene (19.6) and b-caryophyllene (11.3 percent) were the major compounds. The main components in P. hispidum oil were b-pinene (19.7 percent) and a-pinene (9.0 percent).

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