Pinda: a web service for detection and analysis of intraspecies gene duplication events.
Comput Methods Programs Biomed
; 111(3): 711-4, 2013 Sep.
Article
en En
| MEDLINE
| ID: mdl-23796449
ABSTRACT
We present Pinda, a Web service for the detection and analysis of possible duplications of a given protein or DNA sequence within a source species. Pinda fully automates the whole gene duplication detection procedure, from performing the initial similarity searches, to generating the multiple sequence alignments and the corresponding phylogenetic trees, to bootstrapping the trees and producing a Z-score-based list of duplication candidates for the input sequence. Pinda has been cross-validated using an extensive set of known and bibliographically characterized duplication events. The service facilitates the automatic and dependable identification of gene duplication events, using some of the most successful bioinformatics software to perform an extensive analysis protocol. Pinda will prove of use for the analysis of newly discovered genes and proteins, thus also assisting the study of recently sequenced genomes. The service's location is http//orion.mbg.duth.gr/Pinda. The source code is freely available via https//github.com/dgkontopoulos/Pinda/.
Palabras clave
Texto completo:
1
Bases de datos:
MEDLINE
Asunto principal:
Duplicación de Gen
/
Internet
Tipo de estudio:
Diagnostic_studies
/
Prognostic_studies
Idioma:
En
Revista:
Comput Methods Programs Biomed
Asunto de la revista:
INFORMATICA MEDICA
Año:
2013
Tipo del documento:
Article
País de afiliación:
Grecia