The Saccharomyces Genome Database Variant Viewer.
Nucleic Acids Res
; 44(D1): D698-702, 2016 Jan 04.
Article
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| MEDLINE
| ID: mdl-26578556
ABSTRACT
The Saccharomyces Genome Database (SGD; http//www.yeastgenome.org) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. In recent years, we have moved toward increased representation of sequence variation and allelic differences within S. cerevisiae. The publication of numerous additional genomes has motivated the creation of new tools for their annotation and analysis. Here we present the Variant Viewer a dynamic open-source web application for the visualization of genomic and proteomic differences. Multiple sequence alignments have been constructed across high quality genome sequences from 11 different S. cerevisiae strains and stored in the SGD. The alignments and summaries are encoded in JSON and used to create a two-tiered dynamic view of the budding yeast pan-genome, available at http//www.yeastgenome.org/variant-viewer.
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Bases de datos:
MEDLINE
Asunto principal:
Saccharomyces cerevisiae
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Variación Genética
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Genoma Fúngico
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Bases de Datos Genéticas
Idioma:
En
Revista:
Nucleic Acids Res
Año:
2016
Tipo del documento:
Article
País de afiliación:
Estados Unidos