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The Saccharomyces Genome Database Variant Viewer.
Sheppard, Travis K; Hitz, Benjamin C; Engel, Stacia R; Song, Giltae; Balakrishnan, Rama; Binkley, Gail; Costanzo, Maria C; Dalusag, Kyla S; Demeter, Janos; Hellerstedt, Sage T; Karra, Kalpana; Nash, Robert S; Paskov, Kelley M; Skrzypek, Marek S; Weng, Shuai; Wong, Edith D; Cherry, J Michael.
Afiliación
  • Sheppard TK; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Hitz BC; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Engel SR; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Song G; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Balakrishnan R; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Binkley G; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Costanzo MC; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Dalusag KS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Demeter J; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Hellerstedt ST; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Karra K; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Nash RS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Paskov KM; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Skrzypek MS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Weng S; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Wong ED; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
  • Cherry JM; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA cherry@stanford.edu.
Nucleic Acids Res ; 44(D1): D698-702, 2016 Jan 04.
Article en En | MEDLINE | ID: mdl-26578556
ABSTRACT
The Saccharomyces Genome Database (SGD; http//www.yeastgenome.org) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. In recent years, we have moved toward increased representation of sequence variation and allelic differences within S. cerevisiae. The publication of numerous additional genomes has motivated the creation of new tools for their annotation and analysis. Here we present the Variant Viewer a dynamic open-source web application for the visualization of genomic and proteomic differences. Multiple sequence alignments have been constructed across high quality genome sequences from 11 different S. cerevisiae strains and stored in the SGD. The alignments and summaries are encoded in JSON and used to create a two-tiered dynamic view of the budding yeast pan-genome, available at http//www.yeastgenome.org/variant-viewer.
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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Saccharomyces cerevisiae / Variación Genética / Genoma Fúngico / Bases de Datos Genéticas Idioma: En Revista: Nucleic Acids Res Año: 2016 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Saccharomyces cerevisiae / Variación Genética / Genoma Fúngico / Bases de Datos Genéticas Idioma: En Revista: Nucleic Acids Res Año: 2016 Tipo del documento: Article País de afiliación: Estados Unidos