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The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.
Nishiyama, Tomoaki; Sakayama, Hidetoshi; de Vries, Jan; Buschmann, Henrik; Saint-Marcoux, Denis; Ullrich, Kristian K; Haas, Fabian B; Vanderstraeten, Lisa; Becker, Dirk; Lang, Daniel; Vosolsobe, Stanislav; Rombauts, Stephane; Wilhelmsson, Per K I; Janitza, Philipp; Kern, Ramona; Heyl, Alexander; Rümpler, Florian; Villalobos, Luz Irina A Calderón; Clay, John M; Skokan, Roman; Toyoda, Atsushi; Suzuki, Yutaka; Kagoshima, Hiroshi; Schijlen, Elio; Tajeshwar, Navindra; Catarino, Bruno; Hetherington, Alexander J; Saltykova, Assia; Bonnot, Clemence; Breuninger, Holger; Symeonidi, Aikaterini; Radhakrishnan, Guru V; Van Nieuwerburgh, Filip; Deforce, Dieter; Chang, Caren; Karol, Kenneth G; Hedrich, Rainer; Ulvskov, Peter; Glöckner, Gernot; Delwiche, Charles F; Petrásek, Jan; Van de Peer, Yves; Friml, Jiri; Beilby, Mary; Dolan, Liam; Kohara, Yuji; Sugano, Sumio; Fujiyama, Asao; Delaux, Pierre-Marc; Quint, Marcel.
Afiliación
  • Nishiyama T; Advanced Science Research Center, Kanazawa University, Kanazawa 920-0934, Japan. Electronic address: tomoakin@staff.kanazawa-u.ac.jp.
  • Sakayama H; Graduate School of Science, Kobe University, Kobe 657-8501, Japan. Electronic address: hsak@port.kobe-u.ac.jp.
  • de Vries J; Institute for Molecular Evolution, Heinrich Heine University, 40225 Düsseldorf, Germany; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada.
  • Buschmann H; Botany Department, School of Biology and Chemistry, Osnabrück University, 49076 Osnabrück, Germany.
  • Saint-Marcoux D; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK; Université de Lyon, UJM-Saint-Étienne, CNRS, BVpam FRE3727, 42023 Saint-Étienne, France.
  • Ullrich KK; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043 Marburg, Germany.
  • Haas FB; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043 Marburg, Germany.
  • Vanderstraeten L; Laboratory of Functional Plant Biology, Department of Biology, Gent University, 9000 Gent, Belgium.
  • Becker D; Molecular Plant Physiology & Biophysics, University of Wuerzburg, 97082 Wuerzburg, Germany.
  • Lang D; PGSB, Helmholtz Center Munich, 85764 Neuherberg, Germany.
  • Vosolsobe S; Department of Experimental Plant Biology, Faculty of Science, Charles University, 128 44 Prague 2, Czech Republic.
  • Rombauts S; Department of Plant Biotechnology and Bioinformatics, Gent University and VIB Center for Plant Systems Biology, 9052 Gent, Belgium.
  • Wilhelmsson PKI; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043 Marburg, Germany.
  • Janitza P; Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, 06120 Halle (Saale), Germany.
  • Kern R; Plant Physiology, University Rostock, 18051 Rostock, Germany.
  • Heyl A; Department of Biology, Adelphi University, Garden City, NY 11530, USA.
  • Rümpler F; Department of Genetics, Friedrich Schiller University Jena, 07743 Jena, Germany.
  • Villalobos LIAC; Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
  • Clay JM; CBMG, University of Maryland, College Park, MD 20742, USA.
  • Skokan R; Department of Experimental Plant Biology, Faculty of Science, Charles University, 128 44 Prague 2, Czech Republic.
  • Toyoda A; Comparative Genomics Laboratory and Advanced Genomics Center, National Institute of Genetics, Shizuoka 411-8540, Japan.
  • Suzuki Y; Department of Computational Biology and Medical Sciences, University of Tokyo, Kashiwa, Chiba 277-8562, Japan.
  • Kagoshima H; Genome Biology Laboratory, National Institute of Genetics, Shizuoka 411-8540, Japan.
  • Schijlen E; Wageningen University, B.U. Bioscience, 6700 AA Wageningen, the Netherlands.
  • Tajeshwar N; Department of Biology, Adelphi University, Garden City, NY 11530, USA.
  • Catarino B; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK.
  • Hetherington AJ; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK.
  • Saltykova A; Department of Plant Biotechnology and Bioinformatics, Gent University and VIB Center for Plant Systems Biology, 9052 Gent, Belgium; Platform Biotechnology and Molecular Biology, Scientific Institute of Public Health (WIV-ISP), Brussels, Belgium; Department of Information Technology, Gent University,
  • Bonnot C; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK.
  • Breuninger H; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK; ZMBP, Entwicklungsgenetik, 72076 Tübingen, Germany.
  • Symeonidi A; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043 Marburg, Germany.
  • Radhakrishnan GV; Department of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
  • Van Nieuwerburgh F; Laboratory of Pharmaceutical Biotechnology, Gent University, 9000 Gent, Belgium.
  • Deforce D; Laboratory of Pharmaceutical Biotechnology, Gent University, 9000 Gent, Belgium.
  • Chang C; CBMG, University of Maryland, College Park, MD 20742, USA.
  • Karol KG; Lewis B. and Dorothy Cullman Program for Molecular Systematics, The New York Botanical Garden, Bronx, NY 10458, USA.
  • Hedrich R; Molecular Plant Physiology & Biophysics, University of Wuerzburg, 97082 Wuerzburg, Germany.
  • Ulvskov P; Department of Plant and Environmental Sciences, University of Copenhagen, DK-1871 Frederiksberg C, Denmark.
  • Glöckner G; Biochemistry I, Medical Faculty, University of Cologne, 50931 Cologne, Germany.
  • Delwiche CF; CBMG, University of Maryland, College Park, MD 20742, USA.
  • Petrásek J; Department of Experimental Plant Biology, Faculty of Science, Charles University, 128 44 Prague 2, Czech Republic.
  • Van de Peer Y; Department of Plant Biotechnology and Bioinformatics, Gent University and VIB Center for Plant Systems Biology, 9052 Gent, Belgium; Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa.
  • Friml J; Institute of Science and Technology, 3400 Klosterneuburg, Austria.
  • Beilby M; School of Physics, University of NSW, Sydney, Kensington, 2052 NSW, Australia.
  • Dolan L; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK.
  • Kohara Y; Genome Biology Laboratory, National Institute of Genetics, Shizuoka 411-8540, Japan.
  • Sugano S; Department of Computational Biology and Medical Sciences, University of Tokyo, Kashiwa, Chiba 277-8562, Japan.
  • Fujiyama A; Comparative Genomics Laboratory and Advanced Genomics Center, National Institute of Genetics, Shizuoka 411-8540, Japan.
  • Delaux PM; Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Auzeville, BP42617, 31326 Castanet Tolosan, France.
  • Quint M; Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, 06120 Halle (Saale), Germany; Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
Cell ; 174(2): 448-464.e24, 2018 07 12.
Article en En | MEDLINE | ID: mdl-30007417
ABSTRACT
Land plants evolved from charophytic algae, among which Charophyceae possess the most complex body plans. We present the genome of Chara braunii; comparison of the genome to those of land plants identified evolutionary novelties for plant terrestrialization and land plant heritage genes. C. braunii employs unique xylan synthases for cell wall biosynthesis, a phragmoplast (cell separation) mechanism similar to that of land plants, and many phytohormones. C. braunii plastids are controlled via land-plant-like retrograde signaling, and transcriptional regulation is more elaborate than in other algae. The morphological complexity of this organism may result from expanded gene families, with three cases of particular note genes effecting tolerance to reactive oxygen species (ROS), LysM receptor-like kinases, and transcription factors (TFs). Transcriptomic analysis of sexual reproductive structures reveals intricate control by TFs, activity of the ROS gene network, and the ancestral use of plant-like storage and stress protection proteins in the zygote.
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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Genoma de Planta / Chara Tipo de estudio: Prognostic_studies Idioma: En Revista: Cell Año: 2018 Tipo del documento: Article
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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Genoma de Planta / Chara Tipo de estudio: Prognostic_studies Idioma: En Revista: Cell Año: 2018 Tipo del documento: Article