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Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach.
Kueffner, Robert; Zach, Neta; Bronfeld, Maya; Norel, Raquel; Atassi, Nazem; Balagurusamy, Venkat; Di Camillo, Barbara; Chio, Adriano; Cudkowicz, Merit; Dillenberger, Donna; Garcia-Garcia, Javier; Hardiman, Orla; Hoff, Bruce; Knight, Joshua; Leitner, Melanie L; Li, Guang; Mangravite, Lara; Norman, Thea; Wang, Liuxia; Xiao, Jinfeng; Fang, Wen-Chieh; Peng, Jian; Yang, Chen; Chang, Huan-Jui; Stolovitzky, Gustavo.
Afiliación
  • Kueffner R; Icahn School of Medicine at Mount Sinai, New York, NY, USA. r.m.kueffner@gmail.com.
  • Zach N; Teva Pharmaceuticals, Netanyah, Israel. netazach@gmail.com.
  • Bronfeld M; Prize4Life, Haifa, Israel.
  • Norel R; IBM Research, Yorktown Heights, NY, USA.
  • Atassi N; Massachusetts General Hospital, Boston, MA, USA.
  • Balagurusamy V; IBM Research, Yorktown Heights, NY, USA.
  • Di Camillo B; Information Engineering Department, University of Padova, Padova, Italy.
  • Chio A; University of Turin, Turin, Italy.
  • Cudkowicz M; Massachusetts General Hospital, Boston, MA, USA.
  • Dillenberger D; IBM Research, Yorktown Heights, NY, USA.
  • Garcia-Garcia J; Pompeu Fabra University, Barcelona, Spain.
  • Hardiman O; Institute of Neuroscience, Trinity College, Dublin, Ireland.
  • Hoff B; Sage Bionetworks, Seattle, WA, USA.
  • Knight J; IBM Research, Yorktown Heights, NY, USA.
  • Leitner ML; Accelerating NeuroVentures, Boston, MA, USA.
  • Li G; Amazon, Seattle, WA, USA.
  • Mangravite L; Sage Bionetworks, Seattle, WA, USA.
  • Norman T; Sage Bionetworks, Seattle, WA, USA.
  • Wang L; Zillow, Seattle, WA, USA.
  • Xiao J; Department of Computer Science, University of Illinois at Urbana-Champaign, Champaign, IL, USA.
  • Fang WC; Department of Information and Learning Technology, National University, Tainan City, Taiwan.
  • Peng J; Department of Computer Science, University of Illinois at Urbana-Champaign, Champaign, IL, USA.
  • Yang C; Department of Computer Science and Information Engineering, National University, Tainan City, Taiwan.
  • Chang HJ; Faculty of Information Technology, Monash University, Clayton, Australia.
  • Stolovitzky G; IBM Research, Yorktown Heights, NY, USA.
Sci Rep ; 9(1): 690, 2019 01 24.
Article en En | MEDLINE | ID: mdl-30679616
ABSTRACT
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease where substantial heterogeneity in clinical presentation urgently requires a better stratification of patients for the development of drug trials and clinical care. In this study we explored stratification through a crowdsourcing approach, the DREAM Prize4Life ALS Stratification Challenge. Using data from >10,000 patients from ALS clinical trials and 1479 patients from community-based patient registers, more than 30 teams developed new approaches for machine learning and clustering, outperforming the best current predictions of disease outcome. We propose a new method to integrate and analyze patient clusters across methods, showing a clear pattern of consistent and clinically relevant sub-groups of patients that also enabled the reliable classification of new patients. Our analyses reveal novel insights in ALS and describe for the first time the potential of a crowdsourcing to uncover hidden patient sub-populations, and to accelerate disease understanding and therapeutic development.
Asunto(s)

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Colaboración de las Masas Tipo de estudio: Etiology_studies / Prognostic_studies Límite: Humans País/Región como asunto: Europa Idioma: En Revista: Sci Rep Año: 2019 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Colaboración de las Masas Tipo de estudio: Etiology_studies / Prognostic_studies Límite: Humans País/Región como asunto: Europa Idioma: En Revista: Sci Rep Año: 2019 Tipo del documento: Article País de afiliación: Estados Unidos