Transcriptome assembly from long-read RNA-seq alignments with StringTie2.

Kovaka, Sam; Zimin, Aleksey V; Pertea, Geo M; Razaghi, Roham; Salzberg, Steven L; Pertea, Mihaela

Kovaka, Sam; Zimin, Aleksey V; Pertea, Geo M; Razaghi, Roham; Salzberg, Steven L; Pertea, Mihaela.

Afiliación

Kovaka S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, 21218, USA.
Zimin AV; Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, 21205, USA.
Pertea GM; Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, 21205, USA.
Razaghi R; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA.
Salzberg SL; Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, 21205, USA.
Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA.

Genome Biol ; 20(1): 278, 2019 12 16.

Article en En | MEDLINE | ID: mdl-31842956

Asunto(s)

Técnicas Genéticas; Genómica/métodos; Transcriptoma; Animales; Arabidopsis; Humanos; Análisis de Secuencia de ARN; Programas Informáticos; Zea mays

Palabras clave

Gene expression; Long-read sequencing; RNA-seq; Transcriptome assembly

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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Técnicas Genéticas / Genómica / Transcriptoma Tipo de estudio: Evaluation_studies Límite: Animals / Humans Idioma: En Revista: Genome Biol Asunto de la revista: BIOLOGIA MOLECULAR / GENETICA Año: 2019 Tipo del documento: Article País de afiliación: Estados Unidos

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