Your browser doesn't support javascript.
loading
Standards of NGS Data Sharing and Analysis in Ataxias: Recommendations by the NGS Working Group of the Ataxia Global Initiative.
Beijer, Danique; Fogel, Brent L; Beltran, Sergi; Danzi, Matt C; Németh, Andrea H; Züchner, Stephan; Synofzik, Matthis.
Afiliación
  • Beijer D; Dr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA.
  • Fogel BL; Division Translational Genomics of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen, Hoppe-Seyler-Strasse 3, Tübingen, Germany.
  • Beltran S; Departments of Neurology and Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
  • Danzi MC; CNAG-CRG, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Baldiri Reixac 4, 08028, Barcelona, Spain.
  • Németh AH; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
  • Züchner S; Departament de Genètica, Microbiologia I Estadística, Facultat, de Biologia, Universitat de Barcelona (UB), 08028, Barcelona, Spain.
  • Synofzik M; Dr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA.
Cerebellum ; 23(2): 391-400, 2024 Apr.
Article en En | MEDLINE | ID: mdl-36869969
The Ataxia Global Initiative (AGI) is a worldwide multi-stakeholder research platform to systematically enhance trial-readiness in degenerative ataxias. The next-generation sequencing (NGS) working group of the AGI aims to improve methods, platforms, and international standards for ataxia NGS analysis and data sharing, ultimately allowing to increase the number of genetically ataxia patients amenable for natural history and treatment trials. Despite extensive implementation of NGS for ataxia patients in clinical and research settings, the diagnostic gap remains sizeable, as approximately 50% of patients with hereditary ataxia remain genetically undiagnosed. One current shortcoming is the fragmentation of patients and NGS datasets on different analysis platforms and databases around the world. The AGI NGS working group in collaboration with the AGI associated research platforms-CAGC, GENESIS, and RD-Connect GPAP-provides clinicians and scientists access to user-friendly and adaptable interfaces to analyze genome-scale patient data. These platforms also foster collaboration within the ataxia community. These efforts and tools have led to the diagnosis of > 500 ataxia patients and the discovery of > 30 novel ataxia genes. Here, the AGI NGS working group presents their consensus recommendations for NGS data sharing initiatives in the ataxia field, focusing on harmonized NGS variant analysis and standardized clinical and metadata collection, combined with collaborative data and analysis tool sharing across platforms.
Asunto(s)
Palabras clave

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Degeneraciones Espinocerebelosas / Ataxia Cerebelosa Tipo de estudio: Guideline Límite: Humans Idioma: En Revista: Cerebellum Asunto de la revista: CEREBRO Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Degeneraciones Espinocerebelosas / Ataxia Cerebelosa Tipo de estudio: Guideline Límite: Humans Idioma: En Revista: Cerebellum Asunto de la revista: CEREBRO Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos