In silico gepotidacin target mining among 33â213 global Neisseria gonorrhoeae genomes from 1928 to 2023 combined with gepotidacin MIC testing of 22 gonococcal isolates with different GyrA and ParC substitutions.
J Antimicrob Chemother
; 79(9): 2221-2226, 2024 Sep 03.
Article
en En
| MEDLINE
| ID: mdl-39004438
ABSTRACT
OBJECTIVES:
The novel dual-target triazaacenaphthylene, gepotidacin, recently showed promising results in its Phase III randomized controlled trial for the treatment of gonorrhoea. We investigated alterations in the gepotidacin GyrA and ParC targets in gonococci by in silico mining of publicly available global genomes (nâ=â33â213) and determined gepotidacin MICs in isolates with GyrA A92 alterations combined with other GyrA and/or ParC alterations.METHODS:
We examined gonococcal gyrA and parC alleles available at the European Nucleotide Archive. MICs were determined using the agar dilution method (gepotidacin) or Etest (four antimicrobials). Models of DNA gyrase and topoisomerase IV were obtained from AlphaFold and used to model gepotidacin in the binding site.RESULTS:
GyrA A92 alterations were identified in 0.24% of genomes GyrA A92P/S/Vâ+âS91Fâ+âD95Y/A/N (0.208%), A92Pâ+âS91F (0.024%) and A92P (0.003%), but no A92T (previously associated with gepotidacin resistance) was found. ParC D86 alterations were found in 10.6% of genomes ParC D86N/G (10.5%), D86Nâ+âS87I (0.051%), D86Nâ+âS88P (0.012%) and D86Gâ+âE91G (0.003%). One isolate had GyrA A92Pâ+âParC D86N alterations, but remained susceptible to gepotidacin (MICâ=â0.125 mg/L). No GyrA plus ParC alterations resulted in a gepotidacin MICâ>â4 mg/L. Modelling of gepotidacin binding to GyrA A92/A92T/A92P suggested that gepotidacin resistance due to GyrA A92T might be linked to the formation of a new polar contact with DNA.CONCLUSIONS:
In silico mining of 33â213 global gonococcal genomes (isolates from 1928 to 2023) showed that A92 is highly conserved in GyrA, while alterations in D86 of ParC are common. No GyrA plus ParC alterations caused gepotidacin resistance. MIC determination and genomic surveillance of potential antimicrobial resistance determinants are imperative.
Texto completo:
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Bases de datos:
MEDLINE
Asunto principal:
Pruebas de Sensibilidad Microbiana
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Genoma Bacteriano
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Girasa de ADN
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Topoisomerasa de ADN IV
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Acenaftenos
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Antibacterianos
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Neisseria gonorrhoeae
Límite:
Humans
Idioma:
En
Revista:
J Antimicrob Chemother
Año:
2024
Tipo del documento:
Article