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1.
Nature ; 426(6963): 141-6, 2003 Nov 13.
Artigo em Inglês | MEDLINE | ID: mdl-14614496

RESUMO

The elasticity of a solid can vary depending on its state of deformation. For example, metals will soften and polymers may stiffen as they are deformed to levels approaching failure. It is only when the deformation is infinitesimally small that elastic moduli can be considered constant, and hence the elasticity linear. Yet, many existing theories model fracture using linear elasticity, despite the fact that materials will experience extreme deformations at crack tips. Here we show by large-scale atomistic simulations that the elastic behaviour observed at large strains--hyperelasticity--can play a governing role in the dynamics of fracture, and that linear theory is incapable of fully capturing all fracture phenomena. We introduce the concept of a characteristic length scale for the energy flux near the crack tip, and demonstrate that the local hyperelastic wave speed governs the crack speed when the hyperelastic zone approaches this energy length scale.

2.
Biophys J ; 94(12): 4837-46, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18326644

RESUMO

One of the predictions of the energy landscape theory of protein folding is the possibility of barrierless, "downhill" folding under certain conditions. The protein 1BBL has been proposed to fold by such a downhill mechanism, though this is a matter of some dispute. We carried out extensive replica exchange molecular dynamics simulations on 1BBL in explicit solvent to address this controversy and provide a microscopic picture of its folding thermodynamics. Our simulations show two distinct structural transitions in the folding of 1BBL. A low-temperature transition involves a disordering of the protein's tertiary structure without loss of secondary structure. A distinct, higher temperature transition involves the complete loss of secondary structure and dissolution of the hydrophobic core. In contrast, control simulations of the 1BBL homolog E3BD show a single high temperature unfolding transition. Further simulations of 1BBL at high ionic strength show a significant destabilization of helix II but not helix I, suggesting that the apparent folding cooperativity of 1BBL may be highly dependent on experimental conditions. Although our simulations cannot provide definitive evidence of downhill folding in 1BBL, they clearly show evidence of a complex, non-two-state folding process.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/ultraestrutura , Modelos Químicos , Modelos Moleculares , Complexo de Proteína do Fotossistema II/química , Complexo de Proteína do Fotossistema II/ultraestrutura , Simulação por Computador , Conformação Proteica , Dobramento de Proteína , Termodinâmica
3.
Nano Lett ; 6(10): 2379-82, 2006 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-17034115

RESUMO

Recent nanomechanical tests on submicron metal columns and wires have revealed a dramatic increase in yield strength with decreasing sample size. Here, we demonstrate that nanoporous metal foams can be envisioned as a three-dimensional network of ultrahigh-strength nanowires, thus bringing together two seemingly conflicting properties: high strength and high porosity. Specifically, we characterized the size-dependent mechanical properties of nanoporous gold using a combination of nanoindentation, column microcompression, and molecular dynamics simulations. We find that nanoporous gold can be as strong as bulk Au, despite being a highly porous material, and that the ligaments in nanoporous gold approach the theoretical yield strength of Au.


Assuntos
Ouro/química , Nanoestruturas/química , Nanoestruturas/ultraestrutura , Força Compressiva , Elasticidade , Dureza , Teste de Materiais , Mecânica , Conformação Molecular , Tamanho da Partícula , Porosidade , Estresse Mecânico , Propriedades de Superfície , Resistência à Tração
4.
Philos Trans A Math Phys Eng Sci ; 360(1792): 367-82, 2002 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-16210185

RESUMO

With present-day supercomputers, simulation is becoming a powerful tool for providing immediate insights into the nature of fracture dynamics. Atomistic simulations yield ab initio information about crack-tip formation and deformation at length-scales unattainable by experimental measurement and unpredictable by continuum elasticity theory. We will describe several atomistic dynamics studies concerning brittle fracture and ductile deformation.


Assuntos
Materiais Biocompatíveis/análise , Materiais Biocompatíveis/química , Teste de Materiais/métodos , Modelos Químicos , Modelos Moleculares , Teoria Quântica , Reologia/métodos , Simulação por Computador , Elasticidade , Dureza
5.
Proc Natl Acad Sci U S A ; 99(9): 5777-82, 2002 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-16578876

RESUMO

We describe the first of two large-scale atomic simulation projects on materials failure performed on the 12-teraflop ASCI (Accelerated Strategic Computing Initiative) White computer at Lawrence Livermore National Laboratory. This is a multimillion-atom simulation study of crack propagation in rapid brittle fracture where the cracks travel faster than the speed of sound. Our finding centers on a bilayer solid that behaves under large strain like an interface crack between a soft (linear) material and a stiff (nonlinear) material. We verify that the crack behavior is dominated by the local (nonlinear) wave speeds, which can be in excess of the conventional sound speeds of a solid.

6.
Proc Natl Acad Sci U S A ; 99(9): 5783-7, 2002 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-16578877

RESUMO

We describe the second of two large-scale atomic simulation projects on materials failure performed on the 12-teraflop ASCI (Accelerated Strategic Computing Initiative) White computer at the Lawrence Livermore National Laboratory. This investigation simulates ductile failure by using more than one billion atoms where the true complexity of the creation and interaction of hundreds of dislocations are revealed.

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