Frequency and duration of sensory flicker controls astrocyte and neuron specific transcriptional profiles in 5xFAD mice.

Background: Current clinical trials are investigating gamma frequency sensory stimulation as a potential therapeutic strategy for Alzheimer's disease, yet we lack a comprehensive picture of the effects of this stimulation on multiple aspects of brain function. While most prior research has focused on gamma frequency sensory stimulation, we previously showed that exposing mice to visual flickering stimulation increased MAPK and NFκB signaling in the visual cortex in a manner dependent on duration and frequency of sensory stimulation exposure. Because these pathways control multiple neuronal and glial functions and are differentially activated based on the duration and frequency of flicker stimulation, we aimed to define the transcriptional effects of different frequencies and durations of flicker stimulation on multiple brain functions. Methods: We exposed 5xFAD mice to different frequencies of audio/visual flicker stimulation (constant light, 10Hz, 20Hz, 40Hz) for durations of 0.5hr, 1hr, or 4hr, then used bulk RNAseq to profile transcriptional changes within the visual cortex and hippocampus tissues. Using weighted gene co-expression network analysis, we identified modules of co-expressed genes controlled by frequency and/or duration of stimulation. Results: Within the visual cortex, we found that all stimulation frequencies caused fast activation of a module of immune genes within 1hr and slower suppression of synaptic genes after 4hrs of stimulation. Interestingly, all frequencies of stimulation led to slow suppression of astrocyte specific gene sets, while activation of neuronal gene sets was frequency and duration specific. In contrast, in the hippocampus, immune and synaptic modules were suppressed based on the frequency of stimulation. Specifically,10Hz activated a module of genes associated with mitochondrial function, metabolism, and synaptic translation while 10Hz rapidly suppressed a module of genes linked to neurotransmitter activity. Conclusion: Collectively, our data indicate that the frequency and duration of flicker stimulation controls immune, neuronal, and metabolic genes in multiple regions of the brain affected by Alzheimer's disease. Flicker stimulation may thus represent a potential therapeutic strategy that can be tuned based on the brain region and the specific cellular process to be modulated.

A review of caracal and jungle cat diets across their geographical ranges during 1842-2021.

Co-occurring carnivore species that are phylogenetically related or of similar size, morphology, and ecological needs often reduce competition by partitioning shared resources through temporal, spatial, and dietary niche segregation via behavioral adaptations. Caracals (Caracal caracal) and jungle cats (Felis chaus) co-occur in portions of their geographical ranges and are expected to display resource segregation in these ranges. We compiled scat, stomach content, and prey remains found data from published and unpublished sources to summarize information on the diets of caracals and jungle cats across their geographical ranges during 1842-2021. We obtained 63 sources from 26 countries in Europe, Asia, and Africa, in which caracal diet included 151 species while jungle cat diet included 61 species. We found that caracals and jungle cats did not exhibit dietary niche partitioning and had greater dietary similarities in areas of range overlap. We also found that caracals consumed more diverse prey species including prey with greater average body mass compared to jungle cats. Our results suggest that greater prey diversity in areas of range overlap, caracal predation on wide range of prey, and opportunistic feeding behavior that facilitates consumption of more diverse prey species compared to jungle cats, may facilitate co-occurrence between these two felid species.

Intronic OTOF mutation causes an atypical splicing defect resulting in auditory neuropathy spectrum disorder.

Pathogenic variants in OTOF cause auditory neuropathy spectrum disorder (ANSD), namely prelingual nonsyndromic ANSD and temperature-sensitive ANSD (TS-ANSD). All study subjects provided blood sample for genetic analysis and sequencing. Wholeexome sequencing was carried out to identify the causative pathogenic variant. RNAwas extracted to analyse the messenger RNA (mRNA) resulting from the transcription of OTOF. Here, we identified a family with OTOF-related ANSD. This disorder was caused by an intronic mutation in OTOF (NM_194248: c.2406>4A[G). In further analysis, we proved that this variant causes a splicing defect resulting in the omission of exon 20 from the mRNA transcribed from OTOF. In this study, we demonstrated that the variant is four nucleotides away from the conventional splicing site, and our findings suggest that splicing mechanisms need to be better understood, as well as how neighbouring regions may impact splicing.

Evaluation of green lean production in textile industry: a hybrid fuzzy decision-making framework.

Textile industry is an old and effective industry in Iran. However, due to its age and high energy consumption, this industry has low profitability and entrepreneurship. One of the most important problems of the weaving industry is the issue of waste regarding manpower, materials, machinery, and especially energy consumption. Another problem is environmental pollution. In this paper, using a multiple decision-making model for ranking and selecting criteria and sub-criteria, which is presented using the step-wise weight assessment ratio analysis (SWARA) and also by examining several industrial plants on weaving, the final ranking was performed using the fuzzy COPRAS method. According to the final result and using the opinions of experts and reviewing the studied cases, the environmental criterion was more important than other criteria, and also according to the existing sub-criteria, the amount of CO2 production and pH in the process of completion and washing and the types of pollution in the effluent and sewage were more important than other sub-criteria. Also, among the alternatives, company 5 is evaluated as the best alternative.

Phylogenetic analyses of Eurasian lynx (Lynx lynx Linnaeus, 1758) including new mitochondrial DNA sequences from Iran.

The Eurasian lynx (Lynx lynx) is one of the widespread felids in Eurasia; however, relatively little is known about the Asian subspecies, and especially the Iranian populations, which comprise the most southwestern part of its range. The current study aimed to assess the phylogenetic status of Iranian populations relative to other populations of Eurasia, by sequencing a 613 bp fragment of the mitochondrial control region. In total, 44 haplotypes were recorded from 83 sequences throughout Eurasia, two of which were found in Iran. The haplotype (H1) is dominant in all Iranian lynx populations and identical to specimens from SW Russia and central China. The second haplotype (H2) is unique and was recorded only from Ghazvin Province in the central Alborz Mountains. Both haplotypes occur in Ghazvin Province. The phylogenetic tree and a median-joining network identified four clades (i.e., East, West 1, West 2, and South). These results are congruent with previous studies and suggest that Eurasian lynx was restricted to the southern part of its range during the glacial maxima and expanded from there to East Asia and to Europe during several independent re-colonization events. The Caucasus region most like plays an important role as a refugium during glacial cycles.

Genetic structure and ecological niche segregation of Indian gray mongoose (Urva edwardsii) in Iran.

Combining genetic data with ecological niche models is an effective approach for exploring climatic and nonclimatic environmental variables affecting spatial patterns of intraspecific genetic variation. Here, we adopted this combined approach to evaluate genetic structure and ecological niche of the Indian gray mongoose (Urva edwardsii) in Iran, as the most western part of the species range. Using mtDNA, we confirmed the presence of two highly differentiated clades. Then, we incorporated ensemble of small models (ESMs) using climatic and nonclimatic variables with genetic data to assess whether genetic differentiation among clades was coupled with their ecological niche. Climate niche divergence was also examined based on a principal component analysis on climatic factors only. The relative habitat suitability values predicted by the ESMs for both clades revealed their niche separation. Between-clade climate only niche comparison revealed that climate space occupied by clades is similar to some extent, but the niches that they utilize differ between the distribution ranges of clades. We found that in the absence of evidence for recent genetic exchanges, distribution models suggest the species occurs in different niches and that there are apparent areas of disconnection across the species range. The estimated divergence time between the two Iranian clades (4.9 Mya) coincides with the uplifting of the Zagros Mountains during the Early Pliocene. The Zagros mountain-building event seems to have prevented the distribution of U. edwardsii populations between the western and eastern parts of the mountains as a result of vicariance events. Our findings indicated that the two U. edwardsii genetic clades in Iran can be considered as two conservation units and can be utilized to develop habitat-specific and climate change-integrated management strategies.

Distribution and human-caused mortality of Persian leopards Panthera pardus saxicolor in Iran, based on unpublished data and Farsi gray literature.

Gray literature and data from unpublished sources can provide important scientific information that has not been published scientifically. The Persian leopard (hereafter leopard) Panthera pardus saxicolor is classed as endangered on the Red List of the International Union for Conservation of Nature and also is one of the least-studied subspecies of leopard. It occurs in the Caucasus and Central and Southwest Asia. Iran contains more than 75% of the leopard's extant range, and the leopard population in this country serves as a source for neighboring countries. In this study, we determined the distribution and human-caused mortality of leopards in Iran, by reviewing unpublished data and Farsi gray literature (which includes government reports) between 1 January 2010 and 30 December 2018. We created the most recent distribution map of the leopard in Iran. Our data display that human-caused mortality of leopard in Iran mostly includes poaching and intentional poisoning, and roadkill.

Esophageal Infection of Spirocerca lupi with Vulpes rueppellii in Yazd Province, Iran: Case Report.

Spirocerca lupi is an international nematode of Canine and wild carnivores. The generic clinical symptoms are regurgitation, vomiting, and pursiness. The parasite usually procreates nodular masses in the esophagus and pectoral aorta. On July 2014, a four-month male sandy fox was found accidentally killed on the road in Bafgh City, Southeast of Yazd, Yazd Province, Iran during necropsy, referring to esophagus, parasites were collected from esophagus and transmissive up to 70% of alcohol. Parasites were recognized as S. lupi. After clarification of lactophenol and staining, the nematodes were recognized as S. lupi according to key guidelines of Taylor. Besides, the tissue samples were isolated from esophagus wall - the appendix site of nematode for histopathological investigation - so they were transmissive up to 10% of buffered formalin and stained with haematoxylin and eosin. Microscopic diagnoses in esophagus were included epithelial destruction, wall thickening, inflammatory cells infiltration, necrosis and vascular thrombosis. With the author's knowledge, this is the first report and histopathological investigation of S. lupi in sandy fox.

Roads threaten Asiatic cheetahs in Iran.

Wildlife-vehicle collisions are an important cause of mortality for many animal species. They also prove extremely detrimental to the critically endangered Asiatic cheetah (Acinonyx jubatus venaticus) [1,2]. One to two Asiatic cheetahs are killed by vehicles on Iran's roads annually [3,4]. As such, the Asiatic cheetah could be the next charismatic felid subspecies to go extinct in the near future [5]. We identified one statistically-significant cluster of cheetah-vehicle collisions on the Shahroud-Sabzevar Highway (SSH), in Semnan Province. Because of the extremely small population of cheetahs and the corresponding difficulty of finding statistically-significant clusters, we propose that every single cheetah-vehicle collision should be considered important. We further recommend that wildlife underpasses and associated fencing be constructed in areas of previous cheetah-vehicle collisions.