A review of recent advances and future prospects in calculation of reference evapotranspiration in Bangladesh using soft computing models.

Evapotranspiration (ETo) is a complex and non-linear hydrological process with a significant impact on efficient water resource planning and long-term management. The Penman-Monteith (PM) equation method, developed by the Food and Agriculture Organization of the United Nations (FAO), represents an advancement over earlier approaches for estimating ETo. Eto though reliable, faces limitations due to the requirement for climatological data not always available at specific locations. To address this, researchers have explored soft computing (SC) models as alternatives to conventional methods, known for their exceptional accuracy across disciplines. This critical review aims to enhance understanding of cutting-edge SC frameworks for ETo estimation, highlighting advancements in evolutionary models, hybrid and ensemble approaches, and optimization strategies. Recent applications of SC in various climatic zones in Bangladesh are evaluated, with the order of preference being ANFIS > Bi-LSTM > RT > DENFIS > SVR-PSOGWO > PSO-HFS due to their consistently high accuracy (RMSE and R2). This review introduces a benchmark for incorporating evolutionary computation algorithms (EC) into ETo modeling. Each subsection addresses the strengths and weaknesses of known SC models, offering valuable insights. The review serves as a valuable resource for experienced water resource engineers and hydrologists, both domestically and internationally, providing comprehensive SC modeling studies for ETo forecasting. Furthermore, it provides an improved water resources monitoring and management plans.

Proof of Concept of the Yadokari Nature: a Capsidless Replicase-Encoding but Replication-Dependent Positive-Sense Single-Stranded RNA Virus Hosted by an Unrelated Double-Stranded RNA Virus.

We previously proposed a new virus lifestyle or yadokari/yadonushi nature exhibited by a positive-sense single-stranded RNA (ssRNA) virus, yadokari virus 1 (YkV1), and an unrelated double-stranded RNA (dsRNA) virus, yadonushi virus 1 (YnV1) in a phytopathogenic ascomycete, Rosellinia necatrix. We have proposed that YkV1 diverts the YnV1 capsid to trans-encapsidate YkV1 RNA and RNA-dependent RNA polymerase (RdRp) and replicate in the heterocapsid. However, it remains uncertain whether YkV1 replicates using its own RdRp and whether YnV1 capsid copackages both YkV1 and YnV1 components. To address these questions, we first took advantage of the reverse genetics tools available for YkV1. Mutations in the GDD RdRp motif, one of the two identifiable functional motifs in the YkV1 polyprotein, abolished its replication competency. Mutations were also introduced in the conserved 2A-like peptide motif, hypothesized to cleave the YkV1 polyprotein cotranslationally. Interestingly, the replication proficiency of YkV1 mutants in the host fungus agreed with the cleavage activity of the 2A-like peptide tested using a baculovirus expression system. Cesium chloride equilibrium density gradient centrifugation allowed for the separation of particles, with a subset of YnV1 capsids solely packaging YkV1 dsRNA and RdRp. These results provide proof of concept that a capsidless positive-sense ssRNA [(+)ssRNA] virus is hosted by an unrelated dsRNA virus. IMPORTANCE Viruses typically encode their own capsids that encase their genomes. However, a capsidless positive-sense single-stranded RNA [(+)ssRNA] virus, YkV1, depends on an unrelated double-stranded RNA (dsRNA) virus, YnV1, for encapsidation and replication. We previously showed that YkV1 highjacks the capsid of YnV1 for trans-encapsidation of its own RNA and RdRp. YkV1 was hypothesized to divert the heterocapsid as the replication site, as is commonly observed for dsRNA viruses. Herein, mutational analyses showed that the RdRp and 2A-like domains of the YkV1 polyprotein are important for its replication. The active RdRp must be cleaved by a 2A-like peptide from the C-proximal protein. Cesium chloride equilibrium density gradient centrifugation allowed for the separation of particles, with YnV1 capsids solely packaging YkV1 dsRNA and RdRp. This study provides proof of concept of a virus neo-lifestyle where a (+)ssRNA virus snatches capsids from an unrelated dsRNA virus to replicate with its own RdRp, thereby mimicking the typical dsRNA virus lifestyle.

Overexpression of a rice heme activator protein gene (OsHAP2E) confers resistance to pathogens, salinity and drought, and increases photosynthesis and tiller number.

Heme activator protein (HAP), also known as nuclear factor Y or CCAAT binding factor (HAP/NF-Y/CBF), has important functions in regulating plant growth, development and stress responses. The expression of rice HAP gene (OsHAP2E) was induced by probenazole (PBZ), a chemical inducer of disease resistance. To characterize the gene, the chimeric gene (OsHAP2E::GUS) engineered to carry the structural gene encoding ß-glucuronidase (GUS) driven by the promoter from OsHAP2E was introduced into rice. The transgenic lines of OsHAP2Ein::GUS with the intron showed high GUS activity in the wounds and surrounding tissues. When treated by salicylic acid (SA), isonicotinic acid (INA), abscisic acid (ABA) and hydrogen peroxide (H2 O2 ), the lines showed GUS activity exclusively in vascular tissues and mesophyll cells. This activity was enhanced after inoculation with Magnaporthe oryzae or Xanthomonas oryzae pv. oryzae. The OsHAP2E expression level was also induced after inoculation of rice with M. oryzae and X. oryzae pv. oryzae and after treatment with SA, INA, ABA and H2 O2, respectively. We further produced transgenic rice overexpressing OsHAP2E. These lines conferred resistance to M. oryzae or X. oryzae pv. oryzae and to salinity and drought. Furthermore, they showed a higher photosynthetic rate and an increased number of tillers. Microarray analysis showed up-regulation of defence-related genes. These results suggest that this gene could contribute to conferring biotic and abiotic resistances and increasing photosynthesis and tiller numbers.

Botrytis gray mold of Lilium in Bangladesh: Diagnosis, basic study and control.

Bangladesh Agricultural Research Institute (BARI) released two beautiful Lilium varieties in 2020. In the same year the farmers in Gazipur district reported a set of disease symptoms on these flowers and alerted the Plant Pathology Division of BARI. Subsequent investigation confirmed the symptoms as Botrytis gray mold (BGM), caused by Botrytis cinerea. The pathogen identity was confirmed through ITS gene sequencing. A series of in vitro and in planta experiments conducted to understand the symptoms, the optimal growth condition for the pathogen, potential resistant Lilium genotypes, effective chemical treatments and potential of biological control agents to combat the disease. B. cinerea exhibited the highest growth in V8 media (88.55 mm) at pH6 (85.32 mm) and temperature between 20 and 25 °C (89.56 mm), and pH6 (85.32 mm). Screening revealed that five oriental-originated genotypes provided lower disease incidence (31.66-41.66 %), and were categorized as moderately resistant to resistant in disease reaction. Six fungicides successfully reduced mycelial growth in vitro. Moreover, Ipridione provided the lowest % disease incidence (27.11) and % disease severity (5.33) in the in planta nethouse experiment. Therefore, this fungicide was recommended to the farmers initially. Additionally, two fungal biocontrol agents Epicoccum nigrum EJS002 and Trichoderma ThC003, demonstrated effectiveness in reducing leaf lesion size over control in a detach leaf assessment technique. In conclusion, this study presents BGM of Lilium as a farmers issue for the first time in Bangladesh. It also provides valuable insights into its management, recommending specific chemical fungicides for farmers to use, and two fungal antagonists (E. nigrum EJS002 and Trichoderma ThC003) as potential disease control agent.

High Thermoelectric Power Factor Realization in Si-Rich SiGe/Si Superlattices by Super-Controlled Interfaces.

A Si-based superlattice is one of the promising thermoelectric films for realizing a stand-alone single-chip power supply. Unlike a p-type superlattice (SL) achieving a higher power factor due to strain-induced high hole mobility, in the n-type SL, the strain can degrade the power factor due to lifting conduction band degeneracy. Here, we propose epitaxial Si-rich SiGe/Si SLs with ultrathin Ge segregation interface layers. The ultrathin interface layers are designed to be sufficiently strained, not to give strain to the above Si layers. Therein, a drastic thermal conductivity reduction occurs by larger phonon scattering at the interfaces with the large atomic size difference between Si layers and Ge segregation layers, while unstrained Si layers preserve a high conduction band degeneracy leading to a high Seebeck coefficient. As a result, the n-type Si0.7Ge0.3/Si SL with controlled interfaces achieves a higher power factor of ∼25 µW cm-1 K-2 in the in-plane direction at room temperature, which is superior to ever reported SiGe-based films: SiGe-based SLs and SiGe films. The Si0.7Ge0.3/Si SL with controlled interfaces also exhibits a low thermal conductivity of ∼2.5 W m-1 K-1 in the cross-plane direction, which is ∼5 times lower than the reported value in a conventional Si0.7Ge0.3/Si SL. These results demonstrate that strain and atomic differences controlled by ultrathin layers can bring a breakthrough for realizing high-performance light-element-based thermoelectric films.

Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.

BACKGROUND: Aspartic protease (APs) plays important roles in plant growth, development and biotic and abiotic stresses. We previously reported that the expression of a rice AP gene (OsAP77, Os10g0537800) was induced by probenazole (PBZ), a chemical inducer of disease resistance. In this study we examined some characteristics of this gene in response to fungal, bacterial and viral pathogens. RESULTS: To elucidate the spatial and temporal expression of OsAP77, the chimeric gene was constructed carrying the structural gene encoding ß-glucuronidase (GUS) driven by the OsAP77 promoter. This construct was introduced into rice and the transgenic lines were tested to analyze gene expression by fungal, bacterial and viral infections. Inoculation with Magnaporthe oryzae or Xanthomonas oryzae pv. oryzae revealed the enhanced GUS activities in vascular tissues surrounding the symptom sites by each pathogen. Moreover, GUS activity also increased after inoculation with Cucumber mosaic virus (CMV). Transgenic plants immersed in a solution containing salicylic acid (SA), isonicotinic acid (INA), hydrogen peroxide (H2O2) or abscisic acid (ABA) showed an increased level of GUS activity exclusively in vascular tissues. RT-PCR analysis showed that OsAP77 was induced not only by infection with these pathogens, but also after treatment with SA, INA, H2O2 or ABA. A knockout mutant line of OsAP77 by the insertion of Tos17 after inoculation with M. oryzae, X. oryzae pv. oryzae or CMV showed an enhanced susceptibility compared to wild type. CONCLUSION: These results suggest that the expression of OsAP77 is induced by pathogen infection and defense related signaling molecules in a vascular tissue specific manner and that this gene has a positive role of defense response against fungal, bacterial and viral infections.