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1.
Sensors (Basel) ; 24(4)2024 Feb 18.
Artigo em Inglês | MEDLINE | ID: mdl-38400470

RESUMO

Cardiac CINE, a form of dynamic cardiac MRI, is indispensable in the diagnosis and treatment of heart conditions, offering detailed visualization essential for the early detection of cardiac diseases. As the demand for higher-resolution images increases, so does the volume of data requiring processing, presenting significant computational challenges that can impede the efficiency of diagnostic imaging. Our research presents an approach that takes advantage of the computational power of multiple Graphics Processing Units (GPUs) to address these challenges. GPUs are devices capable of performing large volumes of computations in a short period, and have significantly improved the cardiac MRI reconstruction process, allowing images to be produced faster. The innovation of our work resides in utilizing a multi-device system capable of processing the substantial data volumes demanded by high-resolution, five-dimensional cardiac MRI. This system surpasses the memory capacity limitations of single GPUs by partitioning large datasets into smaller, manageable segments for parallel processing, thereby preserving image integrity and accelerating reconstruction times. Utilizing OpenCL technology, our system offers adaptability and cross-platform functionality, ensuring wider applicability. The proposed multi-device approach offers an advancement in medical imaging, accelerating the reconstruction process and facilitating faster and more effective cardiac health assessment.


Assuntos
Algoritmos , Imageamento por Ressonância Magnética , Coração/diagnóstico por imagem , Aumento da Imagem/métodos , Imageamento Tridimensional/métodos
2.
Magn Reson Med ; 89(6): 2270-2280, 2023 06.
Artigo em Inglês | MEDLINE | ID: mdl-36705075

RESUMO

PURPOSE: The aim of this paper is to show that geometrical criteria for designing multishell q $$ q $$ -space sampling procedures do not necessarily translate into reconstruction matrices with high figures of merit commonly used in the compressed sensing theory. In addition, we show that a well-known method for visiting k-space in radial three-dimensional acquisitions, namely, the Spiral Phyllotaxis, is a competitive initialization for the optimization of our nonconvex objective function. THEORY AND METHODS: We propose the gradient design method WISH (WeIghting SHells) which uses an objective function that accounts for weighted distances between gradients within M-tuples of consecutive shells, with M $$ M $$ ranging between 1 and the maximum number of shells S $$ S $$ . All the M $$ M $$ -tuples share the same weight ω M $$ {\omega}_M $$ . The objective function is optimized for a sample of these weights, using Spiral Phyllotaxis as initialization. State-of-the-art General Electrostatic Energy Minimization (GEEM) and Spherical Codes (SC) were used for comparison. For the three methods, reconstruction matrices of the attenuation signal using MAP-MRI were tested using figures of merit borrowed from the Compressed Sensing theory (namely, Restricted Isometry Property -RIP- and Coherence); we also tested the gradient design using a geometric criterion based on Voronoi cells. RESULTS: For RIP and Coherence, WISH got better results in at least one combination of weights, whilst the criterion based on Voronoi cells showed an unrelated pattern. CONCLUSION: The versatility provided by WISH is supported by better results. Optimization in the weight parameter space is likely to provide additional improvements. For a practical design with an intermediate number of gradients, our results recommend to carry out the methodology here used to determine the appropriate gradient table.


Assuntos
Algoritmos , Aumento da Imagem , Aumento da Imagem/métodos , Encéfalo , Imageamento por Ressonância Magnética/métodos , Difusão , Processamento de Imagem Assistida por Computador/métodos
3.
Magn Reson Med ; 90(1): 329-342, 2023 07.
Artigo em Inglês | MEDLINE | ID: mdl-36877139

RESUMO

PURPOSE: To develop an open-source, high-performance, easy-to-use, extensible, cross-platform, and general MRI simulation framework (Koma). METHODS: Koma was developed using the Julia programming language. Like other MRI simulators, it solves the Bloch equations with CPU and GPU parallelization. The inputs are the scanner parameters, the phantom, and the pulse sequence that is Pulseq-compatible. The raw data is stored in the ISMRMRD format. For the reconstruction, MRIReco.jl is used. A graphical user interface utilizing web technologies was also designed. Two types of experiments were performed: one to compare the quality of the results and the execution speed, and the second to compare its usability. Finally, the use of Koma in quantitative imaging was demonstrated by simulating Magnetic Resonance Fingerprinting (MRF) acquisitions. RESULTS: Koma was compared to two well-known open-source MRI simulators, JEMRIS and MRiLab. Highly accurate results (with mean absolute differences below 0.1% compared to JEMRIS) and better GPU performance than MRiLab were demonstrated. In an experiment with students, Koma was proved to be easy to use, eight times faster on personal computers than JEMRIS, and 65% of test subjects recommended it. The potential for designing acquisition and reconstruction techniques was also shown through the simulation of MRF acquisitions, with conclusions that agree with the literature. CONCLUSIONS: Koma's speed and flexibility have the potential to make simulations more accessible for education and research. Koma is expected to be used for designing and testing novel pulse sequences before implementing them in the scanner with Pulseq files, and for creating synthetic data to train machine learning models.


Assuntos
Idioma , Imageamento por Ressonância Magnética , Humanos , Imageamento por Ressonância Magnética/métodos , Simulação por Computador , Imagens de Fantasmas , Aceleração
4.
NMR Biomed ; 35(9): e4754, 2022 09.
Artigo em Inglês | MEDLINE | ID: mdl-35485596

RESUMO

Glioblastoma is an aggressive and fast-growing brain tumor with poor prognosis. Predicting the expected survival of patients with glioblastoma is a key task for efficient treatment and surgery planning. Survival predictions could be enhanced by means of a radiomic system. However, these systems demand high numbers of multicontrast images, the acquisitions of which are time consuming, giving rise to patient discomfort and low healthcare system efficiency. Synthetic MRI could favor deployment of radiomic systems in the clinic by allowing practitioners not only to reduce acquisition time, but also to retrospectively complete databases or to replace artifacted images. In this work we analyze the replacement of an actually acquired MR weighted image by a synthesized version to predict survival of glioblastoma patients with a radiomic system. Each synthesized version was realistically generated from two acquired images with a deep learning synthetic MRI approach based on a convolutional neural network. Specifically, two weighted images were considered for the replacement one at a time, a T2w and a FLAIR, which were synthesized from the pairs T1w and FLAIR, and T1w and T2w, respectively. Furthermore, a radiomic system for survival prediction, which can classify patients into two groups (survival >480 days and ≤ 480 days), was built. Results show that the radiomic system fed with the synthesized image achieves similar performance compared with using the acquired one, and better performance than a model that does not include this image. Hence, our results confirm that synthetic MRI does add to glioblastoma survival prediction within a radiomics-based approach.


Assuntos
Neoplasias Encefálicas , Glioblastoma , Neoplasias Encefálicas/patologia , Glioblastoma/patologia , Humanos , Imageamento por Ressonância Magnética/métodos , Estudos Retrospectivos
5.
Sensors (Basel) ; 21(18)2021 Sep 08.
Artigo em Inglês | MEDLINE | ID: mdl-34577231

RESUMO

Magnetic resonance is an imaging modality that implies a high complexity for radiographers. Despite some simulators having been developed for training purposes, we are not aware of any attempt to quantitatively measure their educational performance. The present study gives an answer to the question: Does an MRI simulator built on specific functional and non-functional requirements help radiographers learn MRI theoretical and practical concepts better than traditional educational method based on lectures? Our study was carried out in a single day by a total of 60 students of a main hospital in Madrid, Spain. The experiment followed a randomized pre-test post-test design with a control group that used a traditional educational method, and an experimental group that used our simulator. Knowledge level was assessed by means of an instrument with evidence of validity in its format and content, while its reliability was analyzed after the experiment. Statistical differences between both groups were measured. Significant statistical differences were found in favor of the participants who used the simulator for both the post-test score and the gain (difference between post-test and pre-test scores). The effect size turned out to be significant as well. In this work we evaluated a magnetic resonance simulation paradigm as a tool to help in the training of radiographers. The study shows that a simulator built on specific design requirements is a valuable complement to traditional education procedures, backed up with significant quantitative results.


Assuntos
Competência Clínica , Treinamento por Simulação , Simulação por Computador , Humanos , Espectroscopia de Ressonância Magnética , Reprodutibilidade dos Testes
6.
Entropy (Basel) ; 23(5)2021 Apr 29.
Artigo em Inglês | MEDLINE | ID: mdl-33947089

RESUMO

Numerous methods in the extensive literature on magnetic resonance imaging (MRI) reconstruction exploit temporal redundancy to accelerate cardiac cine. Some of them include motion compensation, which involves high computational costs and long runtimes. In this work, we proposed a method-elastic alignedSENSE (EAS)-for the direct reconstruction of a motion-free image plus a set of nonrigid deformations to reconstruct a 2D cardiac sequence. The feasibility of the proposed approach was tested in 2D Cartesian and golden radial multi-coil breath-hold cardiac cine acquisitions. The proposed approach was compared against parallel imaging compressed sense (sPICS) and group-wise motion corrected compressed sense (GWCS) reconstructions. EAS provides better results on objective measures with considerable less runtime when an acceleration factor is higher than 10×. Subjective assessment of an expert, however, invited proposing the combination of EAS and GWCS as a preferable alternative to GWCS or EAS in isolation.

7.
Entropy (Basel) ; 22(6)2020 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-33286459

RESUMO

Groupwise image (GW) registration is customarily used for subsequent processing in medical imaging. However, it is computationally expensive due to repeated calculation of transformations and gradients. In this paper, we propose a deep learning (DL) architecture that achieves GW elastic registration of a 2D dynamic sequence on an affordable average GPU. Our solution, referred to as dGW, is a simplified version of the well-known U-net. In our GW solution, the image that the other images are registered to, referred to in the paper as template image, is iteratively obtained together with the registered images. Design and evaluation have been carried out using 2D cine cardiac MR slices from 2 databases respectively consisting of 89 and 41 subjects. The first database was used for training and validation with 66.6-33.3% split. The second one was used for validation (50%) and testing (50%). Additional network hyperparameters, which are-in essence-those that control the transformation smoothness degree, are obtained by means of a forward selection procedure. Our results show a 9-fold runtime reduction with respect to an optimization-based implementation; in addition, making use of the well-known structural similarity (SSIM) index we have obtained significative differences with dGW with respect to an alternative DL solution based on Voxelmorph.

8.
Magn Reson Med ; 81(2): 1353-1367, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30229566

RESUMO

PURPOSE: To characterize the noise distributions in 3D-MRI accelerated acquisitions reconstructed with GRAPPA using an exact noise propagation analysis that operates directly in k-space. THEORY AND METHODS: We exploit the extensive symmetries and separability in the reconstruction steps to account for the correlation between all the acquired k-space samples. Monte Carlo simulations and multi-repetition phantom experiments were conducted to test both the accuracy and feasibility of the proposed method; a high-resolution in-vivo experiment was performed to assess the applicability of our method to clinical scenarios. RESULTS: Our theoretical derivation shows that the direct k-space analysis renders an exact noise characterization under the assumptions of stationarity and uncorrelation in the original k-space. Simulations and phantom experiments provide empirical support to the theoretical proof. Finally, the high-resolution in-vivo experiment demonstrates the ability of the proposed method to assess the impact of the sub-sampling pattern on the overall noise behavior. CONCLUSIONS: By operating directly in the k-space, the proposed method is able to provide an exact characterization of noise for any Cartesian pattern sub-sampled along the two phase-encoding directions. Exploitation of the symmetries and separability into independent blocks through the image reconstruction procedure allows us to overcome the computational challenges related to the very large size of the covariance matrices involved.


Assuntos
Mapeamento Encefálico , Processamento de Imagem Assistida por Computador/métodos , Imageamento Tridimensional , Imageamento por Ressonância Magnética , Algoritmos , Encéfalo/diagnóstico por imagem , Humanos , Aumento da Imagem/métodos , Modelos Estatísticos , Método de Monte Carlo , Distribuição Normal , Imagens de Fantasmas , Reprodutibilidade dos Testes , Software , Água
9.
J Med Syst ; 44(1): 9, 2019 Dec 02.
Artigo em Inglês | MEDLINE | ID: mdl-31792618

RESUMO

A new web-based education-oriented magnetic resonance (MR) simulator is presented. We have identified the main requirements that this simulator should comply with, so that trainees can face useful practical tasks such as setting the exact slice position and its properties, selecting the correct protocol or fitting the parameters to acquire an image. The tool follows the client-server model. The client contains the interface that mimics the console of a real machine and several of its features. The server stores anatomical models and executes the bulk of the simulation. This cross-platform simulator has been used in two real educational scenarios. The acceptance of the tool has been measured using two criteria, namely, the System Usability Scale and the Likelihood to Recommend, both with satisfactory results. Therefore, we conclude that given the potential of the tool, it may play a relevant role for the training of MRI operators and other involved personnel.


Assuntos
Simulação por Computador/normas , Instrução por Computador/normas , Imageamento por Ressonância Magnética/normas , Radiologia/educação , Treinamento por Simulação/normas , Competência Clínica , Humanos , Interface Usuário-Computador
10.
Magn Reson Med ; 77(3): 1208-1215, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-26970237

RESUMO

PURPOSE: To eliminate the need of spatial intraframe regularization in a recently reported dynamic MRI compressed-sensing-based reconstruction method with motion compensation and to increase its performance. THEORY AND METHODS: We propose a new regularization metric based on the introduction of a spatial weighting measure given by the Jacobian of the estimated deformations. It shows convenient discretization properties and, as a byproduct, it also provides a theoretical support to a result reported by others based on an intuitive design. The method has been applied to the reconstruction of both short and long axis views of the heart of four healthy volunteers. Quantitative image quality metrics as well as straightforward visual assessment are reported. RESULTS: Short and long axis reconstructions of cardiac cine MRI sequences have shown superior results than previously reported methods both in terms of quantitative metrics and of visual assessment. Fine details are better preserved due to the lack of additional intraframe regularization, with no significant image artifacts even for an acceleration factor of 12. CONCLUSIONS: The proposed Jacobian Weighted temporal Total Variation results in better reconstructions of highly undersampled cardiac cine MRI than previously proposed methods and sets a theoretical ground for forward and backward predictors used elsewhere. Magn Reson Med 77:1208-1215, 2017. © 2016 International Society for Magnetic Resonance in Medicine.


Assuntos
Algoritmos , Artefatos , Técnicas de Imagem de Sincronização Cardíaca/métodos , Compressão de Dados/métodos , Aumento da Imagem/métodos , Imagem Cinética por Ressonância Magnética/métodos , Interpretação de Imagem Assistida por Computador/métodos , Movimento (Física) , Análise Numérica Assistida por Computador , Reprodutibilidade dos Testes , Sensibilidade e Especificidade
11.
Magn Reson Med ; 75(4): 1525-36, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25960151

RESUMO

PURPOSE: Compressed sensing methods with motion estimation and compensation techniques have been proposed for the reconstruction of accelerated dynamic MRI. However, artifacts that naturally arise in compressed sensing reconstruction procedures hinder the estimation of motion from reconstructed images, especially at high acceleration factors. This work introduces a robust groupwise nonrigid motion estimation technique applied to the compressed sensing reconstruction of dynamic cardiac cine MRI sequences. THEORY AND METHODS: A spatio-temporal regularized, groupwise, nonrigid registration method based on a B-splines deformation model and a least squares metric is used to estimate and to compensate the movement of the heart in breath-hold cine acquisitions and to obtain a quasistatic sequence with highly sparse representation in temporally transformed domains. RESULTS: Short axis in vivo datasets are used for validation, both original multicoil as well as DICOM data. Fully sampled data were retrospectively undersampled with various acceleration factors and reconstructions were compared with the two well-known methods k-t FOCUSS and MASTeR. The proposed method achieves higher signal to error ratio and structure similarity index for medium to high acceleration factors. CONCLUSIONS: Reconstruction methods based on groupwise registration show higher quality reconstructions for cardiac cine images than the pairwise counterparts tested.


Assuntos
Processamento de Imagem Assistida por Computador/métodos , Imagem Cinética por Ressonância Magnética/métodos , Algoritmos , Suspensão da Respiração , Cardiomiopatia Hipertrófica/diagnóstico por imagem , Coração/diagnóstico por imagem , Humanos
12.
Comput Biol Med ; 169: 107855, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-38113681

RESUMO

Cardiac Magnetic Resonance (CMR) Imaging is currently considered the gold standard imaging modality in cardiology. However, it is accompanied by a tradeoff between spatial resolution and acquisition time. Providing accurate measures of thin walls relative to the image resolution may prove challenging. One such anatomical structure is the cardiac right ventricle. Methods for measuring thickness of wall-like anatomical structures often rely on the Laplace equation to provide point-to-point correspondences between both boundaries. This work presents limex, a novel method to solve the Laplace equation using ghost nodes and providing extrapolated values, which is tested on three different datasets: a mathematical phantom, a set of biventricular segmentations from CMR images of ten pigs and the database used at the RV Segmentation Challenge held at MICCAI'12. Thickness measurements using the proposed methodology are more accurate than state-of-the-art methods, especially with the coarsest image resolutions, yielding mean L1 norms of the error between 43.28% and 86.52% lower than the second-best methods on the different test datasets. It is also computationally affordable. Limex has outperformed other state-of-the-art methods in classifying RV myocardial segments by their thickness.


Assuntos
Ventrículos do Coração , Imagem Cinética por Ressonância Magnética , Animais , Suínos , Imagem Cinética por Ressonância Magnética/métodos , Coração , Imageamento por Ressonância Magnética , Miocárdio
13.
Neuroimage ; 81: 26-48, 2013 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-23707405

RESUMO

Tract-based analysis from DTI has become a widely employed procedure to study the white matter of the brain and its alterations in neurological and neurosurgical pathologies. Automatic tractography selection methods, where a subset of detected tracts corresponding to a specific white matter structure are selected, are a key component of the DTI processing pipeline. Using automatic tractography selection, repeatable results free of intra and inter-expert variability can be obtained rapidly, without the need for cumbersome manual segmentation. Many of the current approaches for automatic tractography selection rely on a previous registration procedure using an atlas; hence, these methods are likely very sensitive to the accuracy of the registration. In this paper we show that the performance of the registration step is critical to the overall result. This effect can in turn affect the calculation of scalar parameters derived subsequently from the selected tracts and often used in clinical practice; we show that such errors may be comparable in magnitude to the subtle differences found in clinical studies to differentiate between healthy and pathological. As an alternative, we propose a tractography selection method based on the use of geometrical constraints specific for each fiber bundle. Our experimental results show that the approach proposed performs with increased robustness and accuracy with respect to other approaches in the literature, particularly in the presence of imperfect registration.


Assuntos
Encéfalo , Imagem de Tensor de Difusão/métodos , Processamento de Imagem Assistida por Computador/métodos , Fibras Nervosas Mielinizadas , Adulto , Idoso , Feminino , Humanos , Masculino , Pessoa de Meia-Idade
14.
Front Neuroimaging ; 2: 1055463, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37554645

RESUMO

Gadolinium-based contrast agents (GBCAs) have become a crucial part of MRI acquisitions in neuro-oncology for the detection, characterization and monitoring of brain tumors. However, contrast-enhanced (CE) acquisitions not only raise safety concerns, but also lead to patient discomfort, the need of more skilled manpower and cost increase. Recently, several proposed deep learning works intend to reduce, or even eliminate, the need of GBCAs. This study reviews the published works related to the synthesis of CE images from low-dose and/or their native -non CE- counterparts. The data, type of neural network, and number of input modalities for each method are summarized as well as the evaluation methods. Based on this analysis, we discuss the main issues that these methods need to overcome in order to become suitable for their clinical usage. We also hypothesize some future trends that research on this topic may follow.

15.
Artif Intell Med ; 143: 102630, 2023 09.
Artigo em Inglês | MEDLINE | ID: mdl-37673587

RESUMO

Attention Deficit/Hyperactivity Disorder (ADHD) is a prevalent neurodevelopmental disorder in childhood that often persists into adulthood. Objectively diagnosing ADHD can be challenging due to the reliance on subjective questionnaires in clinical assessment. Fortunately, recent advancements in artificial intelligence (AI) have shown promise in providing objective diagnoses through the analysis of medical images or activity recordings. These AI-based techniques have demonstrated accurate ADHD diagnosis; however, the growing complexity of deep learning models has introduced a lack of interpretability. These models often function as black boxes, unable to offer meaningful insights into the data patterns that characterize ADHD. OBJECTIVE: This paper proposes a methodology to interpret the output of an AI-based diagnosis system for combined ADHD in age and gender-stratified populations. METHODS: Our system is based on the analysis of 24 hour-long activity records using Convolutional Neural Networks (CNNs) to classify spectrograms of activity windows. These windows are interpreted using occlusion maps to highlight the time-frequency patterns explaining ADHD activity. RESULTS: Significant differences in the frequency patterns between ADHD and controls both in diurnal and nocturnal activity were found for all the populations. Temporal dispersion also presented differences in the male population. CONCLUSION: The proposed interpretation techniques for CNNs highlighted gender- and age-related differences between ADHD patients and controls. Leveraging these differences could potentially lead to improved diagnostic accuracy, especially if a larger and more balanced dataset is utilized. SIGNIFICANCE: Our findings pave the way for the development of an AI-based diagnosis system for ADHD that offers interpretability, thereby providing valuable insights into the underlying etiology of the disease.


Assuntos
Transtorno do Deficit de Atenção com Hiperatividade , Aprendizado Profundo , Humanos , Masculino , Transtorno do Deficit de Atenção com Hiperatividade/diagnóstico , Inteligência Artificial , Redes Neurais de Computação
16.
Children (Basel) ; 9(7)2022 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-35884007

RESUMO

Adolescent idiopathic scoliosis (AIS) is characterized by the radiographic presence of a frontal plane curve, with a magnitude greater than 10° (Cobb technique). Diffusion MRI can be employed to assess the cerebral white matter. The aim of this study was to analyze, by means of MRI, the presence of any alteration in the connectivity of cerebral white matter in AIS patients. In this study, 22 patients with AIS participated. The imaging protocol consisted in T1 and diffusion-weighted acquisitions. Based on the information from one of the diffusion acquisitions, a whole brain tractography was performed with the MRtrix tool. Tractography is a method to deduce the trajectory of fiber bundles through the white matter based on the diffusion MRI data. By combining cortical segmentation with tractography, a connectivity matrix of size 84 × 84 was constructed using FA (fractional anisotropy), and the number of streamlines as connectomics metrics. The results obtained support the hypothesis that alterations in cerebral white matter connectivity in patients with adolescent idiopathic scoliosis (AIS) exist. We consider that the application of diffusion MRI, together with transcranial magnetic stimulation neurophysiologically, is useful to search the etiology of AIS.

17.
Comput Methods Programs Biomed ; 210: 106371, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34525411

RESUMO

BACKGROUND AND OBJECTIVE: Synthetic magnetic resonance imaging (MRI) is a low cost procedure that serves as a bridge between qualitative and quantitative MRI. However, the proposed methods require very specific sequences or private protocols which have scarcely found integration in clinical scanners. We propose a learning-based approach to compute T1, T2, and PD parametric maps from only a pair of T1- and T2-weighted images customarily acquired in the clinical routine. METHODS: Our approach is based on a convolutional neural network (CNN) trained with synthetic data; specifically, a synthetic dataset with 120 volumes was constructed from the anatomical brain model of the BrainWeb tool and served as the training set. The CNN learns an end-to-end mapping function to transform the input T1- and T2-weighted images to their underlying T1, T2, and PD parametric maps. Then, conventional weighted images unseen by the network are analytically synthesized from the parametric maps. The network can be fine tuned with a small database of actual weighted images and maps for better performance. RESULTS: This approach is able to accurately compute parametric maps from synthetic brain data achieving normalized squared error values predominantly below 1%. It also yields realistic parametric maps from actual MR brain acquisitions with T1, T2, and PD values in the range of the literature and with correlation values above 0.95 compared to the T1 and T2 maps obtained from relaxometry sequences. Further, the synthesized weighted images are visually realistic; the mean square error values are always below 9% and the structural similarity index is usually above 0.90. Network fine tuning with actual maps improves performance, while training exclusively with a small database of actual maps shows a performance degradation. CONCLUSIONS: These results show that our approach is able to provide realistic parametric maps and weighted images out of a CNN that (a) is trained with a synthetic dataset and (b) needs only two inputs, which are in turn obtained from a common full-brain acquisition that takes less than 8 min of scan time. Although a fine tuning with actual maps improves performance, synthetic data is crucial to reach acceptable performance levels. Hence, we show the utility of our approach for both quantitative MRI in clinical viable times and for the synthesis of additional weighted images to those actually acquired.


Assuntos
Aprendizado Profundo , Encéfalo/diagnóstico por imagem , Processamento de Imagem Assistida por Computador , Imageamento por Ressonância Magnética , Redes Neurais de Computação
18.
Comput Methods Programs Biomed ; 200: 105812, 2021 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-33160691

RESUMO

BACKGROUND AND OBJECTIVE: This paper proposes a new and highly efficient implementation of 3D+t groupwise registration based on the free-form deformation paradigm. METHODS: Deformation is posed as a cascade of 1D convolutions, achieving great reduction in execution time for evaluation of transformations and gradients. RESULTS: The proposed method has been applied to 4D cardiac MRI and 4D thoracic CT monomodal datasets. Results show an average runtime reduction above 90%, both in CPU and GPU executions, compared with the classical tensor product formulation. CONCLUSIONS: Our implementation, although fully developed for the metric sum of squared differences, can be extended to other metrics and its adaptation to multiresolution strategies is straightforward. Therefore, it can be extremely useful to speed up image registration procedures in different applications where high dimensional data are involved.


Assuntos
Algoritmos , Tomografia Computadorizada Quadridimensional , Imageamento por Ressonância Magnética
19.
Comput Methods Programs Biomed ; 207: 106143, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34029830

RESUMO

BACKGROUND AND OBJECTIVE: Recent research has reported methods that reconstruct cardiac MR images acquired with acceleration factors as high as 15 in Cartesian coordinates. However, the computational cost of these techniques is quite high, taking about 40 min of CPU time in a typical current machine. This delay between acquisition and final result can completely rule out the use of MRI in clinical environments in favor of other techniques, such as CT. In spite of this, reconstruction methods reported elsewhere can be parallelized to a high degree, a fact that makes them suitable for GPU-type computing devices. This paper contributes a vendor-independent, device-agnostic implementation of such a method to reconstruct 2D motion-compensated, compressed-sensing MRI sequences in clinically viable times. METHODS: By leveraging our OpenCLIPER framework, the proposed system works in any computing device (CPU, GPU, DSP, FPGA, etc.), as long as an OpenCL implementation is available, and development is significantly simplified versus a pure OpenCL implementation. In OpenCLIPER, the problem is partitioned in independent black boxes which may be connected as needed, while device initialization and maintenance is handled automatically. Parallel implementations of both a groupwise FFD-based registration method, as well as a multicoil extension of the NESTA algorithm have been carried out as processes of OpenCLIPER. Our platform also includes significant development and debugging aids. HIP code and precompiled libraries can be integrated seamlessly as well since OpenCLIPER makes data objects shareable between OpenCL and HIP. This also opens an opportunity to include CUDA source code (via HIP) in prospective developments. RESULTS: The proposed solution can reconstruct a whole 12-14 slice CINE volume acquired in 19-32 coils and 20 phases, with an acceleration factor of ranging 4-8, in a few seconds, with results comparable to another popular platform (BART). If motion compensation is included, reconstruction time is in the order of one minute. CONCLUSIONS: We have obtained clinically-viable times in GPUs from different vendors, with delays in some platforms that do not have correspondence with its price in the market. We also contribute a parallel groupwise registration subsystem for motion estimation/compensation and a parallel multicoil NESTA subsystem for l1-l2-norm problem solving.


Assuntos
Algoritmos , Imageamento por Ressonância Magnética , Estudos Prospectivos , Radiografia , Software
20.
Chronobiol Int ; 38(2): 286-295, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-32869668

RESUMO

Rhythm research has had a long tradition in psychiatry, especially in affective disorders. The study of trends in incidence plays a central role in epidemiology and public health. The aims of this research were to describe the socio-demographic and clinical characteristics of persons admitted for psychiatric hospitalization and their trends and periodicity in cases (global and by groups) in Spain over the 11 year study span. We conducted a cross-sectional study of the hospital discharge database of Castilla y León from 2005 to 2015, selecting hospitalizations for psychiatric reasons. Trends in the rates of hospitalization were studied by joinpoint regression analysis. Time series analysis for periodicities was done by spectral analysis, fast Fourier transform, and cosinor analysis. Some 49501 hospitalizations due to psychiatric disorders, out of 2717192 hospital admissions, took place during the study span. Hospitalizations for psychosis were frequent (15949, 32.2%), while such for eating disorders were infrequent, but showed the highest average stay (28 days) and DRG relative weight (2.41). The general trend was a statistically significant 2% annual increase in psychiatric hospitalizations over the 11 year span; substance abuse was the only exception to this trend. The whole population and the subgroups of psychosis and bipolar disorders showed significant circannual (one-year) variation in admissions. The rhythm percentage of the global group was 11.4%, while the rhythm percentages of the psychosis, bipolar, and eating disorders were 17.1%, 17.5%, and 9.6%, respectively (p < .05).


Assuntos
Transtornos Mentais , Transtornos Psicóticos , Ritmo Circadiano , Estudos Transversais , Hospitalização , Humanos , Transtornos Mentais/epidemiologia , Transtornos Psicóticos/epidemiologia , Espanha/epidemiologia
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