Detalhe da pesquisa
1.
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.
Nucleic Acids Res
; 52(D1): D513-D521, 2024 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37962356
2.
The Quest for Orthologs orthology benchmark service in 2022.
Nucleic Acids Res
; 50(W1): W623-W632, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35552456
3.
OMAMO: orthology-based alternative model organism selection.
Bioinformatics
; 38(10): 2965-2966, 2022 05 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-35561194
4.
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Nucleic Acids Res
; 49(D1): D373-D379, 2021 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33174605
5.
OMA standalone: orthology inference among public and custom genomes and transcriptomes.
Genome Res
; 29(7): 1152-1163, 2019 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-31235654
6.
The Quest for Orthologs benchmark service and consensus calls in 2020.
Nucleic Acids Res
; 48(W1): W538-W545, 2020 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-32374845
7.
iHam and pyHam: visualizing and processing hierarchical orthologous groups.
Bioinformatics
; 35(14): 2504-2506, 2019 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30508066
8.
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome.
Bioinformatics
; 35(7): 1159-1166, 2019 04 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30184069
9.
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Nucleic Acids Res
; 46(D1): D477-D485, 2018 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29106550
10.
Standardized benchmarking in the quest for orthologs.
Nat Methods
; 13(5): 425-30, 2016 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-27043882
11.
Gearing up to handle the mosaic nature of life in the quest for orthologs.
Bioinformatics
; 34(2): 323-329, 2018 Jan 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28968857
12.
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference.
Bioinformatics
; 33(14): i75-i82, 2017 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28881964
13.
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.
Nucleic Acids Res
; 43(Database issue): D240-9, 2015 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-25399418
14.
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res
; 42(Web Server issue): W436-41, 2014 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-24792157
15.
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree.
Nat Biotechnol
; 42(1): 139-147, 2024 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-37081138
16.
Quality assessment of gene repertoire annotations with OMArk.
Nat Biotechnol
; 2024 Feb 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-38383603
17.
Quality of computationally inferred gene ontology annotations.
PLoS Comput Biol
; 8(5): e1002533, 2012 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-22693439
18.
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs.
PLoS Comput Biol
; 8(5): e1002514, 2012.
Artigo
em Inglês
| MEDLINE | ID: mdl-22615551
19.
OMA 2011: orthology inference among 1000 complete genomes.
Nucleic Acids Res
; 39(Database issue): D289-94, 2011 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-21113020
20.
DrosOMA: the Drosophila Orthologous Matrix browser.
F1000Res
; 12: 936, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-38434623