Paleo-ENSO influence on African environments and early modern humans.

In this study, we synthesize terrestrial and marine proxy records, spanning the past 620 ky, to decipher pan-African climate variability and its drivers and potential linkages to hominin evolution. We find a tight correlation between moisture availability across Africa to El Niño Southern Ocean oscillation (ENSO) variability, a manifestation of the Walker Circulation, that was most likely driven by changes in Earth's eccentricity. Our results demonstrate that low-latitude insolation was a prominent driver of pan-African climate change during the Middle to Late Pleistocene. We argue that these low-latitude climate processes governed the dispersion and evolution of vegetation as well as mammals in eastern and western Africa by increasing resource-rich and stable ecotonal settings thought to have been important to early modern humans.

Moist and warm conditions in Eurasia during the last glacial of the Middle Pleistocene Transition.

The end of the Middle Pleistocene Transition (MPT, ~ 800-670 thousand years before present, ka) was characterised by the emergence of large glacial ice-sheets associated with anomalously warm North Atlantic sea surface temperatures enhancing moisture production. Still, the direction and intensity of moisture transport across Eurasia towards potential ice-sheets is poorly constrained. To reconstruct late MPT moisture production and dispersal, we combine records of upper ocean temperature and pollen-based Mediterranean forest cover, a tracer of westerlies and precipitation, from a subtropical drill-core collected off South-West Iberia, with records of East Asia summer monsoon (EASM) strength and West Pacific surface temperatures, and model simulations. Here we show that south-western European winter precipitation and EASM strength reached high levels during the Marine Isotope Stage 18 glacial. This anomalous situation was caused by nearly-continuous moisture supply from both oceans and its transport to higher latitudes through the westerlies, likely fuelling the accelerated expansion of northern hemisphere ice-sheets during the late MPT.

Disentangling the impact of anthropogenic and natural processes on the environment in a subtropical subalpine lake catchment in northeastern Taiwan over the past 150 years.

Human activities impose significant changes on sedimentation processes and vegetation cover within lake catchments. However, the needed time for an anthropogenically disturbed natural state to be reversed back to its natural state by environmental protection programs is still ambiguous. Here we employ a multi-proxy approach to delineate major environmental disturbances such as logging and forest fires on the catchment in Cueifong Lake, a subtropical subalpine lake in northeastern Taiwan. X-ray Fluorescence (XRF) core scanning, bulk total organic carbon (TOC), bulk total nitrogen (TN), stable carbon isotope (δ13Corg) analysis, and macro-charcoal counting were utilized to reconstruct changes in the catchment environment based on a sediment core from Cueifong Lake. The results show that the element content changed distinctly around 1975 CE, which coincided with the onset of profound deforestation in the lake vicinity recorded in historical documents and aerial photos. After the cessation of the logging event, the detrital input increased, accompanied by decreasing C/N ratios and increasing δ13Corg values. This suggests that increased terrestrial nutrient input promoted algae growth. After the deforestation phase, our results imply a gradual recovery of elemental composition in the catchment environment. By extrapolating the XRF element records, we suggest that it might take >50 years for the sedimentary regime to reach its pre-logging baseline. In contrast to the depositional system, the C/N and δ13Corg shifted significantly - potentially irreversibly - towards an algae-dominant environment instead of recovering to the pre-logging condition. This could be due to both 1) the changes in the different vegetation species used for reforestation and/or 2) anthropogenically introduced fishes in the 1980s. This study proposes the first assessment of the needed recovery time for subtropical Asian subalpine forests after large-scale logging activity and thus provides an apparent reference for policy decisions on natural resource development and environmental protection.

A tale of shifting relations: East Asian summer and winter monsoon variability during the Holocene.

Understanding the dynamics between the East Asian summer (EASM) and winter monsoon (EAWM) is needed to predict their variability under future global warming scenarios. Here, we investigate the relationship between EASM and EAWM as well as the mechanisms driving their variability during the last 10,000 years by stacking marine and terrestrial (non-speleothem) proxy records from the East Asian realm. This provides a regional and proxy independent signal for both monsoonal systems. The respective signal was subsequently analysed using a linear regression model. We find that the phase relationship between EASM and EAWM is not time-constant and significantly depends on orbital configuration changes. In addition, changes in the Atlantic Meridional Overturning circulation, Arctic sea-ice coverage, El Niño-Southern Oscillation and Sun Spot numbers contributed to millennial scale changes in the EASM and EAWM during the Holocene. We also argue that the bulk signal of monsoonal activity captured by the stacked non-speleothem proxy records supports the previously argued bias of speleothem climatic archives to moisture source changes and/or seasonality.

Meridional changes in the South Atlantic Subtropical Gyre during Heinrich Stadials.

Subtropical ocean gyres play a key role in modulating the global climate system redistributing energy between low and high latitudes. A poleward displacement of the subtropical gyres has been observed over the last decades, but the lack of long-term monitoring data hinders an in-depth understanding of their dynamics. Paleoceanographic records offer the opportunity to identify meridional changes in the subtropical gyres and investigate their consequences to the climate system. Here we use the abundance of planktonic foraminiferal species Globorotalia truncatulinodes from a sediment core collected at the northernmost boundary of the South Atlantic Subtropical Gyre (SASG) together with a previously published record of the same species from the southernmost boundary of the SASG to reconstruct meridional fluctuations of the SASG over last ca. 70 kyr. Our findings indicate southward displacements of the SASG during Heinrich Stadials (HS) 6-4 and HS1, and a contraction of the SASG during HS3 and HS2. During HS6-4 and HS1, the SASG southward displacements likely boosted the transfer of heat to the Southern Ocean, ultimately strengthening deep-water upwelling and CO2 release to the atmosphere. We hypothesize that the ongoing SASG poleward displacement may further increase oceanic CO2 release.

Experimental application of an automated alignment correction algorithm for geological CT imaging: phantom study and application to sediment cores from cold-water coral mounds.

BACKGROUND: In computed tomography (CT) quality assurance, alignment of image quality phantoms is crucial for quantitative and reproducible evaluation and may be improved by alignment correction. Our goal was to develop an alignment correction algorithm to facilitate geological sampling of sediment cores taken from a cold-water coral mount. METHODS: An alignment correction algorithm was developed and tested with a CT acquisition at 120 kVp and 150 mAs of an image quality phantom. Random translation (maximum 15 mm) and rotation (maximum 2.86°) were applied and ground-truth was compared to parameters determined by alignment correction. Furthermore, mean densities were evaluated in four regions of interest (ROIs) placed in the phantom low-contrast section, comparing values before and after correction to ground truth. This process was repeated 1000 times. After validation, alignment correction was applied to CT acquisitions (140 kVp, 570 mAs) of sediment core sections up to 1 m in length, and sagittal reconstructions were calculated for sampling planning. RESULTS: In the phantom, average absolute differences between applied and detected parameters after alignment correction were 0.01 ± 0.06 mm (mean ± standard deviation) along the x-axis, 0.11 ± 0.08 mm along the y-axis, 0.15 ± 0.07° around the x-axis, and 0.02 ± 0.02° around the y-axis, respectively. For ROI analysis, differences in densities were 63.12 ± 30.57, 31.38 ± 32.10, 18.27 ± 35.57, and 9.59 ± 26.37 HU before alignment correction and 1.22 ± 1.40, 0.76 ± 0.9, 0.45 ± 0.86, and 0.36 ± 0.48 HU after alignment correction, respectively. For sediment core segments, average absolute detected parameters were 3.93 ± 2.89 mm, 7.21 ± 2.37 mm, 0.37 ± 0.33°, and 0.21 ± 0.22°, respectively. CONCLUSIONS: The alignment correction algorithm was successfully evaluated in the phantom and allowed a correct alignment of sediment core segments, thus aiding in sampling planning. Application to other tasks, like image quality analysis, seems possible.

The full-ORF clone resource of the German cDNA Consortium.

BACKGROUND: With the completion of the human genome sequence the functional analysis and characterization of the encoded proteins has become the next urging challenge in the post-genome era. The lack of comprehensive ORFeome resources has thus far hampered systematic applications by protein gain-of-function analysis. Gene and ORF coverage with full-length ORF clones thus needs to be extended. In combination with a unique and versatile cloning system, these will provide the tools for genome-wide systematic functional analyses, to achieve a deeper insight into complex biological processes. RESULTS: Here we describe the generation of a full-ORF clone resource of human genes applying the Gateway cloning technology (Invitrogen). A pipeline for efficient cloning and sequencing was developed and a sample tracking database was implemented to streamline the clone production process targeting more than 2,200 different ORFs. In addition, a robust cloning strategy was established, permitting the simultaneous generation of two clone variants that contain a particular ORF with as well as without a stop codon by the implementation of only one additional working step into the cloning procedure. Up to 92 % of the targeted ORFs were successfully amplified by PCR and more than 93 % of the amplicons successfully cloned. CONCLUSION: The German cDNA Consortium ORFeome resource currently consists of more than 3,800 sequence-verified entry clones representing ORFs, cloned with and without stop codon, for about 1,700 different gene loci. 177 splice variants were cloned representing 121 of these genes. The entry clones have been used to generate over 5,000 different expression constructs, providing the basis for functional profiling applications. As a member of the recently formed international ORFeome collaboration we substantially contribute to generating and providing a whole genome human ORFeome collection in a unique cloning system that is made freely available in the community.

Pliocene oceanic seaways and global climate.

Tectonically induced changes in oceanic seaways had profound effects on global and regional climate during the Late Neogene. The constriction of the Central American Seaway reached a critical threshold during the early Pliocene ~4.8-4 million years (Ma) ago. Model simulations indicate the strengthening of the Atlantic Meridional Overturning Circulation (AMOC) with a signature warming response in the Northern Hemisphere and cooling in the Southern Hemisphere. Subsequently, between ~4-3 Ma, the constriction of the Indonesian Seaway impacted regional climate and might have accelerated the Northern Hemisphere Glaciation. We here present Pliocene Atlantic interhemispheric sea surface temperature and salinity gradients (deduced from foraminiferal Mg/Ca and stable oxygen isotopes, δ18O) in combination with a recently published benthic stable carbon isotope (δ13C) record from the southernmost extent of North Atlantic Deep Water to reconstruct gateway-related changes in the AMOC mode. After an early reduction of the AMOC at ~5.3 Ma, we show in agreement with model simulations of the impacts of Central American Seaway closure a strengthened AMOC with a global climate signature. During ~3.8-3 Ma, we suggest a weakening of the AMOC in line with the global cooling trend, with possible contributions from the constriction of the Indonesian Seaway.

Paleoceanography. Onset of Mediterranean outflow into the North Atlantic.

Sediments cored along the southwestern Iberian margin during Integrated Ocean Drilling Program Expedition 339 provide constraints on Mediterranean Outflow Water (MOW) circulation patterns from the Pliocene epoch to the present day. After the Strait of Gibraltar opened (5.33 million years ago), a limited volume of MOW entered the Atlantic. Depositional hiatuses indicate erosion by bottom currents related to higher volumes of MOW circulating into the North Atlantic, beginning in the late Pliocene. The hiatuses coincide with regional tectonic events and changes in global thermohaline circulation (THC). This suggests that MOW influenced Atlantic Meridional Overturning Circulation (AMOC), THC, and climatic shifts by contributing a component of warm, saline water to northern latitudes while in turn being influenced by plate tectonics.