Electronic structure and energetics of a heterodimeric BChl g'/Chl a' special pair generated by exposure of Heliomicrobium modesticaldum to dioxygen.

Heliobacteria are anoxygenic phototrophs that have a Type I homodimeric reaction center containing bacteriochlorophyll g (BChl g). Previous experimental studies have shown that in the presence of light and dioxygen, BChl g is converted into 81-OH-chlorophyll aF (hereafter Chl aF), with an accompanying loss of light-driven charge separation. These studies suggest that the reaction center only loses the ability to transfer electrons once both BChl g' molecules of the P800 special pair have been converted to Chl aF'. The present work confirms that the partially converted BChl g'/Chl aF' special pair remains functional in samples exposed to dioxygen by demonstrating its presence using hyperfine couplings obtained from Q-band 1H ENDOR, 2D 14N HYSCORE and DFT methods. The DFT calculations of the BChl g'/BChl g' homodimeric primary donor, which are based on the recently published X-ray crystal structure, predict that the unpaired electron spin is equally delocalized over both BChl g' molecules and provide an excellent match to the experimental hyperfine couplings of the anaerobic samples. Exposure to dioxygen leads to substantial changes in the hyperfine interactions, indicative of greater localization of the unpaired electron spin. The measured hyperfine couplings are reproduced in the DFT calculations by replacing one of the BChl g' molecules of the primary donor with a Chl aF' molecule. The calculations reveal that the spin density becomes localized on BChl g' in the heterodimeric primary donor. Time-dependent DFT calculations demonstrate that conversion of either or both of the accessory BChl g molecules and/or one of the BChl g' molecules of P800 to Chl aF' results in minor effects on the energy of the charge-separated states. In contrast, if both of the BChl g' molecules of P800 are converted a large increase in the energy of the charge-separated state occurs. This suggests that the reaction center remains functional when only one half of the dimer is converted, however, conversion of both halves of the P800 dimer leads to loss of function.

Equilibrium Formation of Stable All-Silicon Versions of 1,3-Cyclobutanediyl.

Main group analogues of cyclobutane-1,3-diyls are fascinating due to their unique reactivity and electronic properties. So far only heteronuclear examples have been isolated. Here we report the isolation and characterization of all-silicon 1,3-cyclobutanediyls as stable closed-shell singlet species from the reversible reactions of cyclotrisilene c-Si3 Tip4 (Tip=2,4,6-triisopropylphenyl) with the N-heterocyclic silylenes c-[(CR2 CH2 )(NtBu)2 ]Si: (R=H or methyl) with saturated backbones. At elevated temperatures, tetrasilacyclobutenes are obtained from these equilibrium mixtures. The corresponding reaction with the unsaturated N-heterocyclic silylene c-(CH)2 (NtBu)2 Si: proceeds directly to the corresponding tetrasilacyclobutene without detection of the assumed 1,3-cyclobutanediyl intermediate.

Two competing acceptors: Electronic structure of PNDITBT probed by time-resolved electron paramagnetic resonance spectroscopy.

Balanced charge transport is particularly important for transistors. Hence, ambipolar organic semiconductors with comparable transport capabilities for both positive and negative charges are highly sought-after. Here, we report detailed insights into the electronic structure of PNDITBT, which is an alternating copolymer of naphthalene diimide (NDI), thiophene, benzothiodiazole (B), and thiophene (T) units, as gained by time-resolved electron paramagnetic resonance (TREPR) spectroscopy combined with quantum-chemical calculations. The results are compared to those obtained for PNDIT2 and PCDTBT, which are derivatives without B and NDI acceptor units, respectively. These two polymers show dominant n- and p-channel behavior in organic field-effect transistors. The TBT moiety clearly dominates the electronic structure of PNDITBT, although less so than in PCDTBT. Furthermore, the triplet exciton most probably delocalizes along the backbone, exhibits a highly homogeneous environment, and planarizes the polymer backbone. Obtaining the zero-field splitting tensors of these triplet states by means of quantum-chemical calculations reveals the triplet energy sublevel associated with the molecular axis parallel to the backbone to be preferentially populated, while the one perpendicular to the aromatic plane is not populated at all, consistent with the spin-density distribution. PNDITBT consisting of two acceptors (NDI and B) has a complex electronic structure, as evident from the two charge-transfer bands in its absorption spectrum. TREPR spectroscopy provides a detailed insight on a molecular level not available by and complementing other methods.

Solvent-mediated aggregate formation of PNDIT2: decreasing the available conformational subspace by introducing locally highly ordered domains.

The high-mobility n-type donor/acceptor polymer PNDIT2 is well-known to form aggregates in solution depending on the solvent used. To gain additional insight into this process, we probed the local environment of triplet excitons in two different solvents and with two different polymer chain lengths using time-resolved electron paramagnetic resonance (TREPR) spectroscopy. Results clearly show aggregation to introduce a high degree of local order in the polymer and to dramatically enhance the delocalisation of the exciton. Furthermore, triplet exciton delocalisation is only affected by the solvent used and hence by aggregate formation, not by chain length. Finally, aggregation changes the mode of delocalisation from intrachain to interchain when forming aggregates, the latter mode dominating as well in thin films. Taken together, TREPR proves to be a valuable tool for investigating aggregation and order in polymers on a molecular length-scale, ideally complementing preceding optical data.

Structural basis of enzymatic benzene ring reduction.

In chemical synthesis, the widely used Birch reduction of aromatic compounds to cyclic dienes requires alkali metals in ammonia as extremely low-potential electron donors. An analogous reaction is catalyzed by benzoyl-coenzyme A reductases (BCRs) that have a key role in the globally important bacterial degradation of aromatic compounds at anoxic sites. Because of the lack of structural information, the catalytic mechanism of enzymatic benzene ring reduction remained obscure. Here, we present the structural characterization of a dearomatizing BCR containing an unprecedented tungsten cofactor that transfers electrons to the benzene ring in an aprotic cavity. Substrate binding induces proton transfer from the bulk solvent to the active site by expelling a Zn(2+) that is crucial for active site encapsulation. Our results shed light on the structural basis of an electron transfer process at the negative redox potential limit in biology. They open the door for biological or biomimetic alternatives to a basic chemical synthetic tool.

Magnetically sensitive light-induced reactions in cryptochrome are consistent with its proposed role as a magnetoreceptor.

Among the biological phenomena that fall within the emerging field of "quantum biology" is the suggestion that magnetically sensitive chemical reactions are responsible for the magnetic compass of migratory birds. It has been proposed that transient radical pairs are formed by photo-induced electron transfer reactions in cryptochrome proteins and that their coherent spin dynamics are influenced by the geomagnetic field leading to changes in the quantum yield of the signaling state of the protein. Despite a variety of supporting evidence, it is still not clear whether cryptochromes have the properties required to respond to magnetic interactions orders of magnitude weaker than the thermal energy, k(B)T. Here we demonstrate that the kinetics and quantum yields of photo-induced flavin-tryptophan radical pairs in cryptochrome are indeed magnetically sensitive. The mechanistic origin of the magnetic field effect is clarified, its dependence on the strength of the magnetic field measured, and the rates of relevant spin-dependent, spin-independent, and spin-decoherence processes determined. We argue that cryptochrome is fit for purpose as a chemical magnetoreceptor.

Ordering of PCDTBT revealed by time-resolved electron paramagnetic resonance spectroscopy of its triplet excitons.

Time-resolved electron paramagnetic resonance (TREPR) spectroscopy is shown to be a powerful tool to characterize triplet excitons of conjugated polymers. The resulting spectra are highly sensitive to the orientation of the molecule. In thin films cast on PET film, the molecules' orientation with respect to the surface plane can be determined, providing access to sample morphology on a microscopic scale. Surprisingly, the conjugated polymer investigated here, a promising material for organic photovoltaics, exhibits ordering even in bulk samples. Orientation effects may significantly influence the efficiency of solar cells, thus rendering proper control of sample morphology highly important.

Variable electron transfer pathways in an amphibian cryptochrome: tryptophan versus tyrosine-based radical pairs.

Electron transfer reactions play vital roles in many biological processes. Very often the transfer of charge(s) proceeds stepwise over large distances involving several amino acid residues. By using time-resolved electron paramagnetic resonance and optical spectroscopy, we have studied the mechanism of light-induced reduction of the FAD cofactor of cryptochrome/photolyase family proteins. In this study, we demonstrate that electron abstraction from a nearby amino acid by the excited FAD triggers further electron transfer steps even if the conserved chain of three tryptophans, known to be an effective electron transfer pathway in these proteins, is blocked. Furthermore, we were able to characterize this secondary electron transfer pathway and identify the amino acid partner of the resulting flavin-amino acid radical pair as a tyrosine located at the protein surface. This alternative electron transfer pathway could explain why interrupting the conserved tryptophan triad does not necessarily alter photoreactions of cryptochromes in vivo. Taken together, our results demonstrate that light-induced electron transfer is a robust property of cryptochromes and more intricate than commonly anticipated.

Entanglement and sources of magnetic anisotropy in radical pair-based avian magnetoreceptors.

One of the principal models of magnetic sensing in migratory birds rests on the quantum spin dynamics of transient radical pairs created photochemically in ocular cryptochrome proteins. We consider here the role of electron spin entanglement and coherence in determining the sensitivity of a radical pair-based geomagnetic compass and the origins of the directional response. It emerges that the anisotropy of radical pairs formed from spin-polarized molecular triplets could form the basis of a more sensitive compass sensor than one founded on the conventional hyperfine-anisotropy model. This property offers new and more flexible opportunities for the design of biologically inspired magnetic compass sensors.

cwepr - A Python package for analysing cw-EPR data focussing on reproducibility and simple usage.

Reproducibility is at the heart of science. Nevertheless, with the advent of computer-based data processing and analysis, most spectroscopists have a hard time fully reproducing a figure from last year's publication starting from the raw data. Unfortunately, this renders their work eventually unscientific. To change this, we need to develop analysis tools that relieve their users from having to trace each processing and analysis step. Furthermore, these tools need to be modular, extendible, and easy to use in order to get used. To this end, we present here the open-source Python package cwepr based on the ASpecD framework for reproducible analysis of spectroscopic data. This package follows best practices of both, science and software development. Key features include an automatically generated gap-less record of each individual processing and analysis step from the raw data to the final published figure. Additionally, it provides a powerful user interface requiring no programming skills of the user. Due to its code quality, modularity, and extensive documentation, it can be easily extended and is actively developed by spectroscopists working in the field. We expect this approach to have a high impact in the field and to help fighting the looming reproducibility crisis in spectroscopy.

Double Doping of a Low-Ionization-Energy Polythiophene with a Molybdenum Dithiolene Complex.

Doping of organic semiconductors is crucial for tuning the charge-carrier density of conjugated polymers. The exchange of more than one electron between a monomeric dopant and an organic semiconductor allows the polaron density to be increased relative to the number of counterions that are introduced into the host matrix. Here, a molybdenum dithiolene complex with a high electron affinity of 5.5 eV is shown to accept two electrons from a polythiophene that has a low ionization energy of 4.7 eV. Double p-doping is consistent with the ability of the monoanion salt of the molybdenum dithiolene complex to dope the polymer. The transfer of two electrons to the neutral dopant was also confirmed by electron paramagnetic resonance spectroscopy since the monoanion, but not the dianion, of the molybdenum dithiolene complex features an unpaired electron. Double doping allowed an ionization efficiency of 200% to be reached, which facilitates the design of strongly doped semiconductors while lessening any counterion-induced disruption of the nanostructure.

Unexpected electron transfer in cryptochrome identified by time-resolved EPR spectroscopy.

Subtle differences in the local sequence and conformation of amino acids can result in diversity and specificity in electron transfer (ET) in proteins, despite structural conservation of the redox partners. For individual ET steps, distance is not necessarily the decisive parameter; orientation and solvent accessibility of the ET partners, and thus the stabilization of the charge-separated states, contribute substantially.

All-optical manipulation of singlet exciton transport in individual supramolecular nanostructures by triplet gating.

Directed transport of singlet excitation energy is a key process in natural light-harvesting systems and a desired feature in assemblies of functional organic molecules for organic electronics and nanotechnology applications. However, progress in this direction is hampered by the lack of concepts and model systems. Here we demonstrate an all-optical approach to manipulate singlet exciton transport pathways within supramolecular nanostructures via singlet-triplet annihilation, i.e., to enforce an effective motion of singlet excitons along a predefined direction. For this proof-of-concept, we locally photo-generate a long-lived triplet exciton population and subsequently a singlet exciton population on single bundles of H-type supramolecular nanofibres using two temporally and spatially separated laser pulses. The local triplet exciton population operates as a gate for the singlet exciton transport since singlet-triplet annihilation hinders singlet exciton motion across the triplet population. We visualize this manipulation of singlet exciton transport via the fluorescence signal from the singlet excitons, using a detection-beam scanning approach combined with time-correlated single-photon counting. Our reversible, all-optical manipulation of singlet exciton transport can pave the way to realising new design principles for functional photonic nanodevices.

Structure-Function Relationship of Organic Semiconductors: Detailed Insights From Time-Resolved EPR Spectroscopy.

Organic photovoltaics (OPV) is a promising technology to account for the increasing demand for energy in form of electricity. Whereas the last decades have seen tremendous progress in the field witnessed by the steady increase in efficiency of OPV devices, we still lack proper understanding of fundamental aspects of light-energy conversion, demanding for systematic investigation on a fundamental level. A detailed understanding of the electronic structure of semiconducting polymers and their building blocks is essential to develop efficient materials for organic electronics. Illuminating conjugated polymers not only leads to excited states, but sheds light on some of the most important aspects of device efficiency in organic electronics as well. The interplay between electronic structure, morphology, flexibility, and local ordering, while at the heart of structure-function relationship of organic electronic materials, is still barely understood. (Time-resolved) electron paramagnetic resonance (EPR) spectroscopy is particularly suited to address these questions, allowing one to directly detect paramagnetic states and to reveal their spin-multiplicity, besides its clearly superior spectral resolution compared to optical methods. This article aims at giving a non-specialist audience an overview of what EPR spectroscopy and particularly its time-resolved variant (TREPR) can contribute to unraveling aspects of structure-function relationship in organic semiconductors.

Impact of Side Chains of Conjugated Polymers on Electronic Structure: A Case Study.

Processing from solution is a crucial aspect of organic semiconductors, as it is at the heart of the promise of easy and inexpensive manufacturing of devices. Introducing alkyl side chains is an approach often used to increase solubility and enhance miscibility in blends. The influence of these side chains on the electronic structure, although highly important for a detailed understanding of the structure-function relationship of these materials, is still barely understood. Here, we use time-resolved electron paramagnetic resonance spectroscopy with its molecular resolution to investigate the role of alkyl side chains on the polymer PCDTBT and a series of its building blocks with increasing length. Comparing our results to the non-hexylated compounds allows us to distinguish four different factors determining exciton delocalization. Detailed quantum-chemical calculations (DFT) allows us to further interpret our spectroscopic data and to relate our findings to the molecular geometry. Alkylation generally leads to more localized excitons, most prominent only for the polymer. Furthermore, singlet excitons are more delocalized than the corresponding triplet excitons, despite the larger dihedral angles within the backbone found for the singlet-state geometries. Our results show TREPR spectroscopy of triplet excitons to be well suited for investigating crucial aspects of the structure-function relationship of conjugated polymers used as organic semiconductors on a molecular basis.

Probing Exciton Delocalization in Organic Semiconductors: Insight from Time-Resolved Electron Paramagnetic Resonance and Magnetophotoselection Experiments.

Delocalization of excited states of organic semiconductors is directly related to their efficiency in devices. Time-resolved electron paramagnetic resonance spectroscopy provides unique capabilities in this respect because of its high spectral resolution and capability to probe the geometry and extent of excitons. Using magnetophotoselection experiments, the mode of exciton delocalization, along the backbone or parallel to the π-π stacking direction of the conjugated polymers, can be revealed. We demonstrate the robustness of this approach by applying it to building blocks of a prototypical conjugated polymer showing a symmetry of their excited states being far from ideal for this experiment. This renders magnetophotoselection superior to other approaches because it is applicable to a wealth of other organic semiconductors. The insight gained into exciton delocalization is crucial to the structure-function relationship of organic semiconductors and directly relevant for developing highly efficient materials.

Drastic Improvement of Air Stability in an n-Type Doped Naphthalene-Diimide Polymer by Thionation.

Organic thermoelectrics are attractive for the fabrication of flexible and cost-effective thermoelectric generators (TEGs) for waste heat recovery, in particular by exploiting large-area printing of polymer conductors. Efficient TEGs require both p- and n-type conductors: so far, the air instability of polymer n-type conductors, which typically lose orders of magnitude in electrical conductivity (σ) even for short exposure time to air, has impeded processing under ambient conditions. Here we tackle this problem in a relevant class of electron transporting, naphthalene-diimide copolymers, by substituting the imide oxygen with sulfur. n-type doping of the thionated copolymer gives rise to a higher σ with respect to the non-thionated one, and most importantly, owing to a reduced energy level of the lowest-unoccupied molecular orbital, σ is substantially stable over 16 h of air exposure. This result highlights the effectiveness of chemical tuning to improve air stability of n-type solution-processable polymer conductors and shows a path toward ambient large-area manufacturing of efficient polymer TEGs.

Enhanced n-Doping Efficiency of a Naphthalenediimide-Based Copolymer through Polar Side Chains for Organic Thermoelectrics.

N-doping of conjugated polymers either requires a high dopant fraction or yields a low electrical conductivity because of their poor compatibility with molecular dopants. We explore n-doping of the polar naphthalenediimide-bithiophene copolymer p(gNDI-gT2) that carries oligoethylene glycol-based side chains and show that the polymer displays superior miscibility with the benzimidazole-dimethylbenzenamine-based n-dopant N-DMBI. The good compatibility of p(gNDI-gT2) and N-DMBI results in a relatively high doping efficiency of 13% for n-dopants, which leads to a high electrical conductivity of more than 10-1 S cm-1 for a dopant concentration of only 10 mol % when measured in an inert atmosphere. We find that the doped polymer is able to maintain its electrical conductivity for about 20 min when exposed to air and recovers rapidly when returned to a nitrogen atmosphere. Overall, solution coprocessing of p(gNDI-gT2) and N-DMBI results in a larger thermoelectric power factor of up to 0.4 µW K-2 m-1 compared to other NDI-based polymers.