Detalhe da pesquisa
1.
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe.
Genome Res
; 2023 Jul 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-37468308
2.
Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family.
PLoS Comput Biol
; 19(8): e1011404, 2023 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-37651409
3.
Identifying genes with conserved splicing structure and orthologous isoforms in human, mouse and dog.
BMC Genomics
; 23(1): 216, 2022 Mar 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35303798
4.
Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering Gene Trajectories and Changes in Biochemical Properties.
Mol Biol Evol
; 38(9): 3754-3774, 2021 08 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-33974066
5.
Sequence selection by FitSS4ASR alleviates ancestral sequence reconstruction as exemplified for geranylgeranylglyceryl phosphate synthase.
Biol Chem
; 400(3): 367-381, 2019 02 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-30763032
6.
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.
Bioinformatics
; 34(4): 585-591, 2018 02 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-29040406
7.
Evolution of the human cold/menthol receptor, TRPM8.
Mol Phylogenet Evol
; 136: 104-118, 2019 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-30980935
8.
Assisted transcriptome reconstruction and splicing orthology.
BMC Genomics
; 17(Suppl 10): 786, 2016 11 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-28185551
9.
ProCARs: Progressive Reconstruction of Ancestral Gene Orders.
BMC Genomics
; 16 Suppl 5: S6, 2015.
Artigo
em Inglês
| MEDLINE | ID: mdl-26040958
10.
Evidence for the existence of elaborate enzyme complexes in the Paleoarchean era.
J Am Chem Soc
; 136(1): 122-9, 2014 Jan 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-24364418
11.
Parallel adaptations to high temperatures in the Archaean eon.
Nature
; 456(7224): 942-5, 2008 Dec 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-19037246
12.
Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathways.
Front Plant Sci
; 15: 1339132, 2024.
Artigo
em Inglês
| MEDLINE | ID: mdl-38357267
13.
The molecular signal for the adaptation to cold temperature during early life on Earth.
Biol Lett
; 9(5): 20130608, 2013 Oct 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-24046876
14.
Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes.
BMC Evol Biol
; 11: 70, 2011 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-21406081
15.
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.
Bioinformatics
; 25(17): 2286-8, 2009 Sep 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-19535536
16.
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.
BMC Genomics
; 10: 534, 2009 Nov 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-19922605
17.
A site- and time-heterogeneous model of amino acid replacement.
Mol Biol Evol
; 25(5): 842-58, 2008 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-18234708
18.
Translational machinery of the chaetognath Spadella cephaloptera: a transcriptomic approach to the analysis of cytosolic ribosomal protein genes and their expression.
BMC Evol Biol
; 7: 146, 2007 Aug 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-17725830
19.
Computational and experimental evidence for the evolution of a (beta alpha)8-barrel protein from an ancestral quarter-barrel stabilised by disulfide bonds.
J Mol Biol
; 398(5): 763-73, 2010 May 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-20363228
20.
A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution.
Mol Biol Evol
; 23(11): 2058-71, 2006 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-16931538