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1.
Extremophiles ; 22(2): 165-175, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29275441

RESUMO

Melanised cell walls and extracellular polymeric matrices protect rock-inhabiting microcolonial fungi from hostile environmental conditions. How extracellular polymeric substances (EPS) perform this protective role was investigated by following development of the model microcolonial black fungus Knufia petricola A95 grown as a sub-aerial biofilm. Extracellular substances were extracted with NaOH/formaldehyde and the structures of two excreted polymers studied by methylation as well as NMR analyses. The main polysaccharide (~ 80%) was pullulan, also known as α-1,4-; α-1,6-glucan, with different degrees of polymerisation. Αlpha-(1,4)-linked-Glcp and α-(1,6)-linked-Glcp were present in the molar ratios of 2:1. A branched galactofuromannan with an α-(1,2)-linked Manp main chain and a ß-(1,6)-linked Galf side chain formed a minor fraction (~ 20%). To further understand the roles of EPS in the weathering of minerals and rocks, viscosity along with corrosive properties were studied using atomic force microscopy (AFM). The kinetic viscosity of extracellular K. petricola A95 polysaccharides (≈ 0.97 × 10-6 m2 s-1) ranged from the equivalent of 2% (w/v) to 5% glycerine, and could thus profoundly affect diffusion-dominated processes. The corrosive nature of rock-inhabiting fungal EPS was also demonstrated by its effects on the aluminium coating of the AFM cantilever and the silicon layer below.


Assuntos
Ascomicetos/química , Corrosão , Glucanos/química , Ascomicetos/metabolismo , Biofilmes , Sedimentos Geológicos/microbiologia , Glucanos/metabolismo
2.
Annu Rev Microbiol ; 63: 431-50, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19575564

RESUMO

Life at the atmosphere-lithosphere boundary is an ancient terrestrial niche that is sparsely covered by thin subaerial biofilms. The microbial inhabitants of these biofilms (a) have adapted to all types of terrestrial/subaerial stresses (e.g., desiccation, extreme temperatures, low nutrient availability, intense solar radiation), (b) interact with minerals that serve as both a dwelling and a source of mineral nutrients, and (c) provoke weathering of rocks and soil formation. Subaerial communities comprise heterotrophic and phototrophic microorganisms that support each other's lifestyle. Major lineages of eubacteria associated with the early colonization of land (e.g., Actinobacteria, Cyanobacteria) are present in these habitats along with eukaryotes such as microscopic green algae and ascomycetous fungi. The subaerial biofilm inhabitants have adapted to desiccation, solar radiation, and other environmental challenges by developing protective, melanized cell walls, assuming microcolonial architectures and symbiotic lifestyles. How these changes occurred, their significance in soil formation, and their potential as markers of climate change are discussed below.


Assuntos
Atmosfera , Ecossistema , Sedimentos Geológicos/microbiologia , Microbiologia do Solo , Bactérias/crescimento & desenvolvimento , Biofilmes/crescimento & desenvolvimento , Clorófitas/crescimento & desenvolvimento , Fungos/crescimento & desenvolvimento
3.
Fungal Genet Biol ; 56: 54-66, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23587800

RESUMO

Rock-inhabiting black fungi [also microcolonial or meristematic fungi (MCF)] are a phylogenetically diverse group of melanised ascomycetes with distinctive morphological features that confer extensive stress tolerance and permit survival in hostile environments. The MCF strain A95 Knufia petricola (syn. Sarcinomyces petricola) belongs to an ancestral lineage of the order Chaetothyriales (class Eurotiomycetes). K. petricola strain A95 is a rock-inhabiting MCF and its growth requirements were studied using the 96-well plate-based Biolog System under ∼1070 different conditions (osmotic stress, pH growth optima, growth factor requirements and nutrient catabolism). A95 is an osmotolerant, oligotrophic MCF that grows best around pH 5. Remarkably, A95 shows metabolic activity in the absence of added nitrogen, phosphorus or sulphur. Correlations could be drawn between the known nutrient requirements of A95 and what probably is available in sub-aerial systems (rock and other material surfaces). Detailed knowledge of A95's metabolic requirements allowed formulation of a synthetic medium that supports strong fungal growth.


Assuntos
Ascomicetos/fisiologia , Microbiologia do Solo , Ascomicetos/crescimento & desenvolvimento , Ascomicetos/isolamento & purificação , Ascomicetos/metabolismo , Meios de Cultura/química , DNA Fúngico/química , DNA Fúngico/genética , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Nitrogênio/metabolismo , Fenômenos Fisiológicos da Nutrição , Compostos Orgânicos/metabolismo , Pressão Osmótica , Fósforo/metabolismo , Análise de Sequência de DNA , Enxofre/metabolismo
4.
J Bacteriol ; 193(9): 2218-28, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21357487

RESUMO

BacA of Sinorhizobium meliloti plays an essential role in the establishment of nitrogen-fixing symbioses with Medicago plants, where it is involved in peptide import and in the addition of very-long-chain fatty acids (VLCFA) to lipid A of lipopolysaccharide (LPS). We investigated the role of BacA in Rhizobium species strain NGR234 by mutating the bacA gene. In the NGR234 bacA mutant, peptide import was impaired, but no effect on VLCFA addition was observed. More importantly, the symbiotic ability of the mutant was comparable to that of the wild type for a variety of legume species. Concurrently, an acpXL mutant of NGR234 was created and assayed. In rhizobia, AcpXL is a dedicated acyl carrier protein necessary for the addition of VLCFA to lipid A. LPS extracted from the NGR234 mutant lacked VLCFA, and this mutant was severely impaired in the ability to form functional nodules with the majority of legumes tested. Our work demonstrates the importance of VLCFA in the NGR234-legume symbiosis and also shows that the necessity of BacA for bacteroid differentiation is restricted to specific legume-Rhizobium interactions.


Assuntos
Proteínas de Bactérias/metabolismo , Lipopolissacarídeos/biossíntese , Proteínas de Membrana Transportadoras/metabolismo , Nodulação/fisiologia , Rhizobium/metabolismo , Proteínas de Bactérias/genética , Regulação Bacteriana da Expressão Gênica/fisiologia , Proteínas de Membrana Transportadoras/genética , Mutação , Polissacarídeos Bacterianos/genética , Polissacarídeos Bacterianos/metabolismo , Regiões Promotoras Genéticas , Transporte Proteico , Rhizobium/classificação , Transcrição Gênica
5.
Mol Plant Microbe Interact ; 24(12): 1513-21, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-22066901

RESUMO

In the presence of flavonoids, Rhizobium sp. strain NGR234 synthesizes a new lipopolysaccharide (LPS), characterized by a rhamnan O-antigen. The presence of this rhamnose-rich LPS is important for the establishment of competent symbiotic interactions between NGR234 and many species of leguminous plants. Two putative rhamnosyl transferases are encoded in a cluster of genes previously shown to be necessary for the synthesis of the rhamnose-rich LPS. These two genes, wbgA and rgpF, were mutated. The resulting mutant strains synthesized truncated rough LPS species rather than the wild-type rhamnose-rich LPS when grown with flavonoids. Based on the compositions of these purified mutant LPS species, we inferred that RgpF is responsible for adding the first one to three rhamnose residues to the flavonoid-induced LPS, whereas WbgA is necessary for the synthesis of the rest of the rhamnan O-antigen. The NGR234 homologue of lpsB, which, in other bacteria, encodes a glycosyl transferase acting early in synthesis of the core portion of LPS, was identified and also mutated. LpsB was required for all the LPS species produced by NGR234, in the presence or absence of flavonoids. Mutants (i.e., of lpsB and rgpF) that lacked any portion of the rhamnan O-antigen of the induced LPS were severely affected in their symbiotic interaction with Vigna unguiculata, whereas the NGR?wbgA mutant, although having very few rhamnose residues in its LPS, was able to elicit functional nodules.


Assuntos
Fabaceae/fisiologia , Flavonoides/farmacologia , Lipopolissacarídeos/metabolismo , Rhizobium/enzimologia , Transferases/metabolismo , Proteínas de Bactérias/genética , Fabaceae/microbiologia , Regulação Bacteriana da Expressão Gênica , Lipopolissacarídeos/química , Lipopolissacarídeos/isolamento & purificação , Família Multigênica , Mutação , Fenótipo , Nodulação , Polissacarídeos Bacterianos , Ramnose/metabolismo , Rhizobium/efeitos dos fármacos , Rhizobium/genética , Rhizobium/fisiologia , Simbiose , Transferases/genética
6.
Microbiology (Reading) ; 157(Pt 3): 627-635, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21109563

RESUMO

Bradyrhizobium elkanii SEMIA587 is a symbiotic nitrogen-fixing bacterium of the group commonly called rhizobia, which induce nodule formation in legumes, and is widely used in Brazilian commercial inoculants of soybean. In response to flavonoid compounds released by plant roots, besides Nod factors, other molecular signals are secreted by rhizobia, such as proteins secreted by type III secretion systems (T3SSs). Rhizobial T3SSs are activated by the transcription regulator TtsI, which binds to sequences present in the promoter regions of T3SS genes via a conserved sequence called the tts box. To study the role of the T3SS of B. elkanii SEMIA587, ttsI was mutated. Protein secretion and flavonoid induction analysis, as well as nodulation tests, were performed with the wild-type and mutant strains. The results obtained showed that B. elkanii SEMIA587 secretes at least two proteins (NopA and NopL, known rhizobial T3SS substrates) after genistein induction, whilst supernatants of the ttsI mutant did not contain these Nops. Unusually for rhizobia, the promoter region of the B. elkanii SEMIA587 ttsI gene contains a tts box, which is responsive to flavonoid induction and to which TtsI can bind. Nodulation tests performed with three different leguminous plants showed that the B. elkanii SEMIA587 ttsI mutant displays host-dependent characteristics; in particular, nodulation of two soybean cultivars, Peking and EMBRAPA 48, was more efficient when TtsI of B. elkanii was functional.


Assuntos
Proteínas de Bactérias/metabolismo , Sistemas de Secreção Bacterianos , Bradyrhizobium/efeitos dos fármacos , Flavonoides/farmacologia , Regulação Bacteriana da Expressão Gênica , Glycine max/microbiologia , Fatores de Transcrição/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Sequência de Bases , Bradyrhizobium/genética , Bradyrhizobium/crescimento & desenvolvimento , Bradyrhizobium/metabolismo , Sequência Conservada , Elementos Facilitadores Genéticos , Flavonoides/metabolismo , Genisteína/metabolismo , Genisteína/farmacologia , Isoflavonas/metabolismo , Isoflavonas/farmacologia , Dados de Sequência Molecular , Mutação , Regiões Promotoras Genéticas , Análise de Sequência de DNA , Glycine max/metabolismo , Simbiose , Fatores de Transcrição/química , Fatores de Transcrição/genética
7.
Mol Microbiol ; 71(1): 92-106, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19019163

RESUMO

A type III protein secretion system (T3SS) is an important host range determinant for the infection of legumes by Rhizobium sp. NGR234. Although a functional T3SS can have either beneficial or detrimental effects on nodule formation, only the rhizobial-specific positively acting effector proteins, NopL and NopP, have been characterized. NGR234 possesses three open reading frames potentially encoding homologues of effector proteins from pathogenic bacteria. NopJ, NopM and NopT are secreted by the T3SS of NGR234. All three can have negative effects on the interaction with legumes, but NopM and NopT also stimulate nodulation on certain plants. NopT belongs to a family of pathogenic effector proteases, typified by the avirulence protein, AvrPphB. The protease domain of NopT is required for its recognition and a subsequent strong inhibition in infection of Crotalaria juncea. In contrast, the negative effects of NopJ are relatively minor when compared with those induced by its Avr homologues. Thus NGR234 uses a mixture of rhizobial-specific and pathogen-derived effector proteins. Whereas some legumes recognize an effector as potentially pathogen-derived, leading to a block in the infection process, others perceive both the negative- and positive-acting effectors concomitantly. It is this equilibrium of effector action that leads to modulation of symbiotic development.


Assuntos
Proteínas de Bactérias/metabolismo , Fabaceae/microbiologia , Rhizobium/fisiologia , Nódulos Radiculares de Plantas/microbiologia , Simbiose , Regulação Bacteriana da Expressão Gênica , Mutagênese Sítio-Dirigida , Fases de Leitura Aberta , Rhizobium/genética , Rhizobium/metabolismo , Especificidade da Espécie
8.
Mol Microbiol ; 68(3): 736-48, 2008 May.
Artigo em Inglês | MEDLINE | ID: mdl-18363648

RESUMO

Infection of legumes by Rhizobium sp. NGR234 and subsequent development of nitrogen-fixing nodules are dependent on the coordinated actions of Nod factors, proteins secreted by a type III secretion system (T3SS) and modifications to surface polysaccharides. The production of these signal molecules is dependent on plant flavonoids which trigger a regulatory cascade controlled by the transcriptional activators NodD1, NodD2, SyrM2 and TtsI. TtsI is known to control the genes responsible for T3SS function and synthesis of a symbiotically important rhamnose-rich lipo-polysaccharide, most probably by binding to cis elements termed tts boxes. Eleven tts boxes were identified in the promoter regions of target genes on the symbiotic plasmid of NGR234. Expression profiles of lacZ fusions to these tts boxes showed that they are part of a TtsI-dependent regulon induced by plant-derived flavonoids. TtsI was purified and demonstrated to bind directly to two of these tts boxes. DNase I footprinting revealed that TtsI occupied not only the tts box consensus sequence, but also upstream and downstream regions in a concentration-dependent manner. Highly conserved bases of the consensus tts box were mutated and, although TtsI binding was still observed in vitro, gfp fusions were no longer transcribed in vivo. Random mutagenesis of a tts box-containing promoter revealed more nucleotides critical for transcriptional activity outside of the consensus.


Assuntos
Proteínas de Bactérias/genética , Regulação Bacteriana da Expressão Gênica , Elementos de Resposta , Rhizobium/genética , Simbiose , Transativadores/metabolismo , Proteínas de Bactérias/metabolismo , Sequência de Bases , Sequência Consenso , Pegada de DNA , Ensaio de Desvio de Mobilidade Eletroforética , Genes Bacterianos , Genes Reporter , Dados de Sequência Molecular , Regiões Promotoras Genéticas , Rhizobium/fisiologia , Deleção de Sequência , Transativadores/genética , Transcrição Gênica
9.
Appl Environ Microbiol ; 75(12): 4035-45, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19376903

RESUMO

Rhizobium sp. strain NGR234 is a unique alphaproteobacterium (order Rhizobiales) that forms nitrogen-fixing nodules with more legumes than any other microsymbiont. We report here that the 3.93-Mbp chromosome (cNGR234) encodes most functions required for cellular growth. Few essential functions are encoded on the 2.43-Mbp megaplasmid (pNGR234b), and none are present on the second 0.54-Mbp symbiotic plasmid (pNGR234a). Among many striking features, the 6.9-Mbp genome encodes more different secretion systems than any other known rhizobia and probably most known bacteria. Altogether, 132 genes and proteins are linked to secretory processes. Secretion systems identified include general and export pathways, a twin arginine translocase secretion system, six type I transporter genes, one functional and one putative type III system, three type IV attachment systems, and two putative type IV conjugation pili. Type V and VI transporters were not identified, however. NGR234 also carries genes and regulatory networks linked to the metabolism of a wide range of aromatic and nonaromatic compounds. In this way, NGR234 can quickly adapt to changing environmental stimuli in soils, rhizospheres, and plants. Finally, NGR234 carries at least six loci linked to the quenching of quorum-sensing signals, as well as one gene (ngrI) that possibly encodes a novel type of autoinducer I molecule.


Assuntos
Transporte Biológico , Proteínas de Membrana Transportadoras/genética , Proteínas de Membrana Transportadoras/metabolismo , Rhizobium/genética , Rhizobium/metabolismo , Análise de Sequência de DNA , DNA Bacteriano/genética , Genes Bacterianos , Genoma Bacteriano , Plasmídeos , Rhizobium/fisiologia
10.
J Exp Bot ; 60(2): 581-90, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19060298

RESUMO

Lotus japonicus, a model legume, develops an efficient, nitrogen-fixing symbiosis with Mesorhizobium loti that promotes plant growth. Lotus japonicus also forms functional nodules with Rhizobium sp. NGR234 and R. etli. Yet, in a plant defence-like reaction, nodules induced by R. etli quickly degenerate, thus limiting plant growth. In contrast, nodules containing NGR234 are long-lasting. It was found that NGR234 initiates nodule formation in a similar way to M. loti MAFF303099, but that the nodules which develop on eleven L. japonicus ecotypes are less efficient in fixing nitrogen. Detailed examination of nodulation of L. japonicus cultivar MG-20 revealed that symbiosomes formed four weeks after inoculation by NGR234 are enlarged in comparison with MAFF303099 and contain multiple bacteroids. Nevertheless, nodules formed by NGR234 fix sufficient nitrogen to avoid rejection by the plant. With time, these nodules develop into fully efficient organs containing bacteroids tightly enclosed in symbiosome membranes, just like those formed by M. loti MAFF303099. This work demonstrates the usefulness of using the well-characterized micro-symbiont NGR234 to study symbiotic signal exchange in the later stages of rhizobia-legume symbioses, especially given the large range of bacterial (NGR234) and plant (L. japonicus) mutants that are available.


Assuntos
Lotus/crescimento & desenvolvimento , Lotus/microbiologia , Rhizobium/fisiologia , Nódulos Radiculares de Plantas/crescimento & desenvolvimento , Nódulos Radiculares de Plantas/microbiologia , Simbiose , Lotus/citologia , Lotus/ultraestrutura , Rhizobium/citologia , Nódulos Radiculares de Plantas/citologia , Nódulos Radiculares de Plantas/ultraestrutura
11.
J Bacteriol ; 190(2): 750-4, 2008 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17981961

RESUMO

Pili synthesized by the type III secretion system of Rhizobium species strain NGR234 are essential for protein secretion and thus for efficient symbiosis with many legumes. Isolation and partial purification of these pili showed that they are composed of at least three proteins, NopA, NopB, and NopX. Using biochemical assays, we show here that these proteins interact directly with one another.


Assuntos
Proteínas de Fímbrias/metabolismo , Fímbrias Bacterianas/química , Rhizobium/química , Rhizobium/metabolismo , Cromatografia em Gel , Proteínas de Fímbrias/química , Proteínas de Fímbrias/genética , Proteínas de Fímbrias/isolamento & purificação , Modelos Biológicos , Peso Molecular , Ligação Proteica
12.
PeerJ ; 5: e3909, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29038760

RESUMO

BACKGROUND: Aspergillus niger, along with many other lignocellulolytic fungi, has been widely used as a commercial workhorse for cellulase production. A fungal cellulase system generally includes three major classes of enzymes i.e., ß-glucosidases, endoglucanases and cellobiohydrolases. Cellobiohydrolases (CBH) are vital to the degradation of crystalline cellulose present in lignocellulosic biomass. However, A. niger naturally secretes low levels of CBH. Hence, recombinant production of A. niger CBH is desirable to increase CBH production yield and also to allow biochemical characterisation of the recombinant CBH from A. niger. METHODS: In this study, the gene encoding a cellobiohydrolase B (cbhB) from A. niger ATCC 10574 was cloned and expressed in the methylotrophic yeast Pichia pastoris X-33. The recombinant CBHB was purified and characterised to study its biochemical and kinetic characteristics. To evaluate the potential of CBHB in assisting biomass conversion, CBHB was supplemented into a commercial cellulase preparation (Cellic® CTec2) and was used to hydrolyse oil palm empty fruit bunch (OPEFB), one of the most abundant lignocellulosic waste from the palm oil industry. To attain maximum saccharification, enzyme loadings were optimised by response surface methodology and the optimum point was validated experimentally. Hydrolysed OPEFB samples were analysed using attenuated total reflectance FTIR spectroscopy (ATR-FTIR) to screen for any compositional changes upon enzymatic treatment. RESULTS: Recombinant CBHB was over-expressed as a hyperglycosylated protein attached to N-glycans. CBHB was enzymatically active towards soluble substrates such as 4-methylumbelliferyl-ß-D-cellobioside (MUC), p-nitrophenyl-cellobioside (pNPC) and p-nitrophenyl-cellobiotrioside (pNPG3) but was not active towards crystalline substrates like Avicel® and Sigmacell cellulose. Characterisation of purified CBHB using MUC as the model substrate revealed that optimum catalysis occurred at 50 °C and pH 4 but the enzyme was stable between pH 3 to 10 and 30 to 80 °C. Although CBHB on its own was unable to digest crystalline substrates, supplementation of CBHB (0.37%) with Cellic® CTec2 (30%) increased saccharification of OPEFB by 27%. Compositional analyses of the treated OPEFB samples revealed that CBHB supplementation reduced peak intensities of both crystalline cellulose Iα and Iß in the treated OPEFB samples. DISCUSSION: Since CBHB alone was inactive against crystalline cellulose, these data suggested that it might work synergistically with other components of Cellic® CTec2. CBHB supplements were desirable as they further increased hydrolysis of OPEFB when the performance of Cellic® CTec2 was theoretically capped at an enzyme loading of 34% in this study. Hence, A. niger CBHB was identified as a potential supplementary enzyme for the enzymatic hydrolysis of OPEFB.

13.
Mol Biotechnol ; 59(7): 271-283, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28573450

RESUMO

Coptotermes curvignathus is a termite that, owing to its ability to digest living trees, serves as a gold mine for robust industrial enzymes. This unique characteristic reflects the presence of very efficient hydrolytic enzyme systems including cellulases. Transcriptomic analyses of the gut of C. curvignathus revealed that carbohydrate-active enzymes (CAZy) were encoded by 3254 transcripts and that included 69 transcripts encoding glycoside hydrolase family 7 (GHF7) enzymes. Since GHF7 enzymes are useful to the biomass conversion industry, a gene encoding for a GHF7 enzyme (Gh1254) was synthesized, sub-cloned and expressed in the methylotrophic yeast Pichia pastoris. Expressed GH1254 had an apparent molecular mass of 42 kDa, but purification was hampered by its low expression levels in shaken flasks. To obtain more of the enzyme, GH1254 was produced in a bioreactor that resulted in a fourfold increase in crude enzyme levels. The purified enzyme was active towards soluble synthetic substrates such as 4-methylumbelliferyl-ß-D-cellobioside, 4-nitrophenyl-ß-D-cellobioside and 4-nitrophenyl-ß-D-lactoside but was non-hydrolytic towards Avicel or carboxymethyl cellulose. GH1254 catalyzed optimally at 35 °C and maintained 70% of its activity at 25 °C. This enzyme is thus potentially useful in food industries employing low-temperature conditions.


Assuntos
Bactérias/enzimologia , Proteínas de Bactérias/genética , Glicosídeo Hidrolases/genética , Isópteros/microbiologia , Animais , Bactérias/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Técnicas de Cultura Celular por Lotes , Reatores Biológicos/microbiologia , Clonagem Molecular , Estabilidade Enzimática , Microbioma Gastrointestinal , Perfilação da Expressão Gênica , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/metabolismo , Filogenia , Pichia/genética , Pichia/crescimento & desenvolvimento
14.
Mol Plant Microbe Interact ; 18(5): 499-507, 2005 May.
Artigo em Inglês | MEDLINE | ID: mdl-15915648

RESUMO

Rhizobium sp. strain NGR234, which is capable of interacting with a large number of legumes, utilizes a variety of signaling molecules to establish nitrogen-fixing symbioses. Among these are nodulation outer proteins (Nops) that transit through a type III secretion system (TTSS). Abolition of Nop secretion affects nodulation of certain legumes. Under free-living conditions, the secretion of Nops can be induced by the addition of flavonoids. Here, we show that an in-frame deletion of nopA abolishes secretion of all other Nops and has the same impact on nodule formation as mutations that lead to a nonfunctional TTSS. This secretion-minus phenotype of the nopA mutant, as well as bioinformatics analysis of NopA itself, suggests that NopA could be an external component of the TTSS. Electron microscopy showed that NGR234 synthesizes fibrillar structures on the cell surface in a flavonoid-inducible and NopA-dependent manner. Purification of the macromolecular surface appendages revealed that NopA is a major component of these structures.


Assuntos
Proteínas de Bactérias/fisiologia , Rhizobium/fisiologia , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Mapeamento Cromossômico , Dados de Sequência Molecular , Rhizobium/genética , Rhizobium/ultraestrutura , Homologia de Sequência de Aminoácidos , Transdução de Sinais
15.
Mol Plant Microbe Interact ; 17(10): 1153-61, 2004 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-15497408

RESUMO

Flavonoids secreted by host plants activate, in conjunction with the transcriptional activator NodD, nod gene expression of rhizobia resulting in the synthesis of Nod factors, which trigger nodule organogenesis. Interestingly, addition of inducing flavonoids also stimulates the production of the phytohormone indole-3-acetic acid (IAA) in several rhizobia. Here, the molecular basis of IAA synthesis in Rhizobium sp. NGR234 was investigated. Mass spectrometric analysis of culture supernatants indicated that NGR234 is capable of synthesizing IAA via three different pathways. The production of IAA is increased strongly by exposure of NGR234 to daidzein in a NodD1-, NodD2-, and SyrM2-dependent manner. This suggests that the y4wEFG locus that is downstream of nod-box NB15 encodes proteins involved in IAA synthesis. Knockout mutations in y4wE and y4wF abolished flavonoid-inducible IAA synthesis and a functional y4wF was required for constitutive IAA production. The promoter activity of NB15 and IAA production both were enhanced by introduction of a multicopy plasmid carrying nodD2 into NGR234. Surprisingly, the y4wE mutant still nodulated Vigna unguiculata and Tephrosia vogelii, although the nodules contained less IAA and IAA conjugates than those formed by the wild-type bacterium.


Assuntos
Genes Bacterianos , Ácidos Indolacéticos/metabolismo , Rhizobium/genética , Rhizobium/metabolismo , Proteínas de Bactérias/metabolismo , Proteínas de Ligação a DNA/metabolismo , Fabaceae/metabolismo , Fabaceae/microbiologia , Flavonoides/metabolismo , Regulação Bacteriana da Expressão Gênica , Família Multigênica , Mutação , Simbiose , Tephrosia/metabolismo , Tephrosia/microbiologia , Transativadores/metabolismo
16.
Mol Plant Microbe Interact ; 16(9): 743-51, 2003 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-12971597

RESUMO

The nitrogen-fixing symbiotic bacterium Rhizobium species NGR234 secretes, via a type III secretion system (TTSS), proteins called Nops (nodulation outer proteins). Abolition of TTSS-dependent protein secretion has either no effect or leads to a change in the number of nodules on selected plants. More dramatically, Nops impair nodule development on Crotalaria juncea roots, resulting in the formation of nonfixing pseudonodules. A double mutation of nopX and nopL, which code for two previously identified secreted proteins, leads to a phenotype on Pachyrhizus tuberosus differing from that of a mutant in which the TTSS is not functional. Use of antibodies and a modification of the purification protocol revealed that NGR234 secretes additional proteins in a TTSS-dependent manner. One of them was identified as NopA, a small 7-kDa protein. Single mutations in nopX and nopL were also generated to assess the involvement of each Nop in protein secretion and nodule formation. Mutation of nopX had little effect on NopL and NopA secretion but greatly affected the interaction of NGR234 with many plant hosts tested. NopL was not necessary for the secretion of any Nops but was required for efficient nodulation of some plant species. NopL may thus act as an effector protein whose recognition is dependent upon the hosts' genetic background.


Assuntos
Proteínas de Bactérias/química , Rhizobium/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sequência de Bases , Primers do DNA , Eletroforese em Gel de Poliacrilamida , Dados de Sequência Molecular , Mutagênese , Mutação , Homologia de Sequência de Aminoácidos , Simbiose
17.
Mol Plant Microbe Interact ; 17(9): 958-66, 2004 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-15384486

RESUMO

Formation of nitrogen-fixing nodules on legume roots by Rhizobium sp. NGR234 requires an array of bacterial factors, including nodulation outer proteins (Nops) secreted through a type III secretion system (TTSS). Secretion of Nops is abolished upon inactivation of ttsI (formerly y4xI), a protein with characteristics of two-component response regulators that was predicted to activate transcription of TTSS-related genes. During the symbiotic interaction, the phenotype of NGR omega ttsI differs from that of a mutant with a nonfunctional secretion machine, however. This indicated that TtsI regulates the synthesis of other symbiotic factors as well. Conserved sequences, called tts boxes, proposed to act as binding sites for TtsI, were identified not only within the TTSS cluster but also in the promoter regions of i) genes predicted to encode homologs of virulence factors secreted by pathogenic bacteria, ii) loci involved in the synthesis of a rhamnose-rich component (rhamnan) of the lipopolysaccharides (LPS), and iii) open reading frames that play roles in plasmid partitioning. Transcription studies showed that TtsI and tts boxes are required for the activation of TTSS-related genes and those involved in rhamnose synthesis. Furthermore, extraction of polysaccharides revealed that inactivation of ttsI abolishes the synthesis of the rhamnan component of the LPS. The phenotypes of mutants impaired in TTSS-dependent protein secretion, rhamnan synthesis, or in both functions were compared to assess the roles of some of the TtsI-controlled factors during symbiosis.


Assuntos
Rhizobium/genética , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Sequência de Bases , Mapeamento Cromossômico , Escherichia coli/genética , Família Multigênica , Fases de Leitura Aberta/genética , Plasmídeos/genética
18.
FEBS Lett ; 554(3): 271-4, 2003 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-14623078

RESUMO

Bacterial pathogens use type III secretion systems (TTSSs) to deliver virulence factors into eukaryotic cells. These effectors perturb host-defence responses, especially signal transduction pathways. A functional TTSS was identified in the symbiotic, nitrogen-fixing bacterium Rhizobium sp. NGR234. NopL (formerly y4xL) of NGR234 is a putative symbiotic effector that modulates nodulation in legumes. To test whether NopL could interact with plant proteins, in vitro phosphorylation experiments were performed using recombinant nopL protein purified from Escherichia coli as well as protein extracts from Lotus japonicus and tobacco plants. NopL serves as a substrate for plant protein kinases as well as purified protein kinase A. Phosphorylation of NopL was inhibited by the Ser/Thr kinase inhibitor K252a as well as by PD98059, a mitogen-activated protein (MAP) kinase kinase inhibitor. It thus seems likely that, after delivery into the plant cell, NopL modulates MAP kinase pathways.


Assuntos
Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Rhizobium/metabolismo , Autorradiografia/métodos , Proteínas de Bactérias/antagonistas & inibidores , Proteínas de Bactérias/genética , Inibidores Enzimáticos/farmacologia , Escherichia coli/química , Escherichia coli/metabolismo , Immunoblotting , Cinética , Lotus/enzimologia , Proteínas Quinases Ativadas por Mitógeno/antagonistas & inibidores , Proteínas Quinases Ativadas por Mitógeno/metabolismo , Radioisótopos de Fósforo , Fosforilação , Proteínas de Plantas/antagonistas & inibidores , Proteínas de Plantas/isolamento & purificação , Proteínas de Plantas/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Rhizobium/genética , Especificidade por Substrato , Nicotiana/enzimologia
19.
Biotechniques ; 33(5): 1038-40, 1042-3, 2002 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-12449381

RESUMO

Here we report the construction of three different vectors for the identification of bacterial genes induced in vitro and/or in vivo. These plasmids contain kanamycin, gentamicin, or tetracycline resistance genes as selectable markers. A promoterless cat and an improved GFP (mut3-gfp) can be used to follow the induction of gene expression by measuring chloramphenicol resistance and fluorescence, respectively.


Assuntos
Proteínas de Ligação a DNA , Vetores Genéticos/genética , Bactérias Gram-Negativas/genética , Regiões Promotoras Genéticas/genética , Cloranfenicol O-Acetiltransferase/genética , Cromossomos Bacterianos/genética , Clonagem Molecular , Conjugação Genética/genética , DNA Helicases/genética , Farmacorresistência Bacteriana/genética , Herança Extracromossômica , Fluorometria , Regulação Bacteriana da Expressão Gênica , Genes Bacterianos , Genes Reporter , Genômica , Proteínas de Fluorescência Verde , Proteínas Luminescentes/genética , Fixação de Nitrogênio/genética , Rhizobium/genética , Transativadores/genética
20.
AMB Express ; 4: 80, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25401079

RESUMO

We established a protoplast-based system to transfer DNA to Knufia petricola strain A95, a melanised rock-inhabiting microcolonial fungus that is also a component of a model sub-aerial biofilm (SAB) system. To test whether the desiccation resistant, highly melanised cell walls would hinder protoplast formation, we treated a melanin-minus mutant of A95 as well as the type-strain with a variety of cell-degrading enzymes. Of the different enzymes tested, lysing enzymes from Trichoderma harzianum were most effective in producing protoplasts. This mixture was equally effective on the melanin-minus mutant and the type-strain. Protoplasts produced using lysing enzymes were mixed with polyethyleneglycol (PEG) and plasmid pCB1004 which contains the hygromycin B (HmB) phosphotransferase (hph) gene under the control of the Aspergillus nidulans trpC. Integration and expression of hph into the A95 genome conferred hygromycin resistance upon the transformants. Two weeks after plating out on selective agar containing HmB, the protoplasts developed cell-walls and formed colonies. Transformation frequencies were in the range 36 to 87 transformants per 10 µg of vector DNA and 10(6) protoplasts. Stability of transformation was confirmed by sub-culturing the putative transformants on selective agar containing HmB as well as by PCR-detection of the hph gene in the colonies. The hph gene was stably integrated as shown by five subsequent passages with and without selection pressure.

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