Enzymatic resolution of α-methyleneparaconic acids and evaluation of their biological activity.

Both enantiomers of three biologically relevant paraconic acids-MB-3, methylenolactocin, and C75-were obtained with enantioselectivities up to 99% by kinetic enzymatic resolutions. Good enantiomeric excesses were obtained for MB-3 and methylenolactocin, using α-chymotrypsin and aminoacylase as enantiocomplementary enzymes, while C75 was resolved with aminoacylase. They all were evaluated for their antiproliferative, antibacterial, and antifungal activities, showing weak effects and practically no difference between enantiomers in each case. At high concentrations (16-64 µg/mL), (-)- C75 acted as an antimicrobial agent against Gram-positive bacteria.

Cloning, overexpression, and characterization of a novel alkali-thermostable xylanase from Geobacillus sp. WBI.

An endo-ß-1,4-xylanase gene xynA of a thermophilic Geobacillus sp. WBI from "hot" compost was isolated by PCR amplification. The gene encoding 407 residues were overexpressed in E. coli and purified by Ni-NTA chromatography. The purified enzyme (47 kDa) had a broad pH optimum of 6.0 to 9.0, and was active between 50 and 90 °C. The enzyme retained 100% of its activity when incubated at 65 °C for 1 h under alkaline condition (pH 10.0) and retained 75% activity at pH 11.0. The K(m) and V(max) of the enzyme were 0.9 mg ml(-1) and 0.8 µmol ml(-1) min(-1), respectively. In molecular dynamics simulation at 338 K (65 °C), the enzyme was found to be stable. At an elevated temperature (450 K) specific α-helix and ß-turns of the proteins were most denatured. The denaturation was less in WBI compared with its highest homolog G. stearothermophilus T-6 xylanase with difference of six residues. The results predict that these regions are responsible for the improved thermostability observed over related enzymes. The present work encourages further experimental demonstration to understand how these regions contribute thermostability to WBI xylanase. The study noted that WBI produces a xylanase with unique characteristics, specifically alkali-thermostability.

Ligand-assisted acyl migration in Au-catalyzed isomerization of propargylic ester to diketone: a DFT study.

Gold-catalyzed isomerization of propargylic ester to a diketone derivative is a fascinating example for the generation of the C-C bond in organoaurate chemistry as it is one of the few reactions that exploit the nucleophilicity of organoaurates to a migrating acyl group. The proposed mechanistic pathway, involving the formation of a four-membered intermediate, has never been substantiated by any theoretical or experimental evidence. Detailed theoretical calculation suggests that the formation of an alkylideneoxoniumcyclobutene intermediate is highly unlikely. Instead, an acyl migration, assisted by the chlorine ligand in the square planar geometry of metal complex offers an alternative mechanism that can justify the reasonable activation barrier and the associated stereochemical feature involved in the reaction. The initial mandatory steps of the catalytic process such as allene formation (af) and rotamerization of allene-bound gold complex (ra) are found to be quite facile. However, the final step, acyl migration (am), that takes place through the formation of an intermediate with C-Cl bond, acts as the rate-determining step of the reaction. The mechanism also justifies the lack of sufficient activity of Au(I) salt to catalyze the isomerization process.

Mechanism of the gold(III)-catalyzed isomerization of substituted allenes to conjugated dienes: a DFT study.

The mechanism of gold(III) [Au(III)]-catalyzed isomerization of alkyl-substituted allenes to conjugated dienes in the presence of a nitroso compound (additive) was studied quantum mechanically using hybrid density functional PBE0 with 6-31G** basis set for lighter atoms and (aug)-ccpVDZ basis set and LANL2 electron core potential for Au atom. Several pathways, involving the nitroso compound in a free or bound state to the gold-allene (GA) complex, were investigated. Calculated results reveal that the unbound nitroso compound acts as a better proton transferring agent in the isomerization process and utilizes its own nitrogen atom to carry the proton. While comparing the efficiency of other basic reagents to carry out the process, it appeared that the moderate basicity of the nitroso compound plays a crucial role to reduce the activation barrier of the reaction pathway. A similar pathway was also investigated using a gold(I) [Au(I)] catalyst and found to be less favorable than the process catalyzed by a Au(III) catalyst. All these facts agree well with the experimental reports for the reaction.

Cell permeable fluorescent receptor for detection of H2PO4(-) in aqueous solvent.

A new colorimetric fluorescent receptor for H(2)PO(4)(-) is reported in this communication. The receptor can detect dihydrogen phosphates optically by developing a color change from yellow to green. Acute spectral responses to H(2)PO(4)(-) in HEPES buffer (DMSO-HEPES 1:9) have been observed. The selectivity zone in terms of pH of the receptor for H(2)PO(4)(-) is attributed to the fitness in the acidity (pK(a)) of receptor with H(2)PO(4)(-). Hydrogen bonding plays the key role here which is confirmed by (1)H NMR titration. The receptor also has good potential for bio-imaging. The mode of interaction has also been established by ab initio calculation.

Theoretical studies on the pyridoxal-5'-phosphate dependent enzyme dopa decarboxylase: effect of thr 246 residue on the co-factor-enzyme binding and reaction mechanism.

Decarboxylation of amino acid is a key step for biosynthesis of several important cellular metabolites in the biological systems. This process is catalyzed by amino acid decarboxylases and most of them use pyridoxal-5'-phosphate (PLP) as a co-factor. PLP is bound to the active site of the enzyme by various interactions with the neighboring amino acid residues. In the present investigation, density functional theory (DFT) and real-time dynamics studies on both ligand-free and ligand-bound dopa decarboxylases (DDC) have been carried out in order to elucidate the factors responsible for facile decarboxylation and also for proper binding of PLP in the active site of the enzyme. It has been found that in the crystal structure Asp271 interacts with the pyridine nitrogen atom of PLP through H-bonding in both native and substrate-bound DDC. On the contrary, Thr246 is in close proximity to the oxygen of 3-OH ofPLP pyridine ring only in the substrate-bound DDC. In the ligand-free enzyme, the distance between the oxygen atom of 3-OH group of PLP pyridine ring and oxygen atom of Thr246 hydroxyl group is not favorable for hydrogen bonding. Thus, present study reveals that hydrogen bonding with 03 of PLP with a hydrogen bond donor residue provided by the enzyme plays an important role in the decarboxylation process.

Au-Catalyzed Hexannulation and Pt-Catalyzed Pentannulation of Propargylic Ester Bearing a 2-Alkynyl-phenyl Substituent: A Comparative DFT Study.

The mechanistic pathways of metal-catalyzed pentannulation and hexannulation of aromatic enediyne were studied quantum mechanically with Pt and Au salts. In agreement with the experimental facts, our result shows that the pentannulation favors over the hexannulation under Pt-catalyzed conditions and the reverse possibility favors when the Pt salt is replaced with an Au one. The Pt-catalyzed reaction involves a long-range acyl migration that follows the cyclization step. Our study reveals that such migration takes place under the assistance of a ligand of the metal atom. Moreover, the variation of aromaticity (probed by the change of the nucleus-independent chemical shift (0) value) in the cyclization steps shows that both processes maintain the development of the aromatic character of the generated intermediate during the progress of the reaction.

Theoretical Study on the Mechanism of Rearrangement Reactions of Bicyclic Derivatives of Cyclopropane to Monocyclic Derivatives under the Catalysis of Pt-Salt.

In this paper, the mechanistic studies on the isomerization of hydroxyl and silyl derivatives of bicyclic cyclopropanes under the catalytic action of Zeise's salt have been reported. The catalytic activity of both the monomeric and the dimeric forms of Zeise's salt has been studied by applying the high-level quantum mechanical method. Results from this investigation reveal that the reaction goes favorably under the catalysis of the dimeric form of Zeise's salt. The calculated activation barrier for the catalytic process using Zeise's dimer reveals that the rearrangement occurs with an activation barrier of 19-25 kcal mol-1. Depending on the nature of substituents present on the substrate, formation of various products has been explained. This study also includes the heteronuclear counter part of Zeise's dimer where one of the Pt-metals is replaced by palladium (Pd) and nickel (Ni) successively. The calculated activation barrier using these heteronuclear catalysts is found to be close enough to that calculated for the catalytic pathway using Zeise's dimer.

Preparation, biological activity and endogenous occurrence of N6-benzyladenosines.

Cytokinin activity of forty-eight 6-benzyladenosine derivatives at both the receptor and cellular levels as well as their anticancer properties were compared in various in vitro assays. The compounds were prepared by the condensation of 6-chloropurine riboside with corresponding substituted benzylamines and characterized by standard collection of physico-chemical methods. The majority of synthesized derivatives exhibited high activity in all three of the cytokinin bioassays used (tobacco callus, wheat leaf senescence and Amaranthus bioassay). The highest activities were observed in the senescence bioassay. For several of the compounds tested, significant differences in activity were found between the bioassays used, indicating that diverse recognition systems may operate. This suggests that it may be possible to modulate particular cytokinin-dependent processes with specific compounds. In contrast to their high activity in bioassays, the tested compounds were recognized with only very low sensitivity in both Arabidopsis thaliana AHK3 and AHK4 receptor assays. The prepared derivatives were also investigated for their antiproliferative properties on cancer and normal cell lines. Several of them showed very strong cytotoxic activity against various cancer cell lines. On the other hand, they were not cytotoxic for normal murine fibroblast (NIH/3T3) cell line. This anticancer activity of cytokinin ribosides may be important, given that several of them occur as endogenous compounds in different organisms.