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1.
Sensors (Basel) ; 23(5)2023 Feb 27.
Artigo em Inglês | MEDLINE | ID: mdl-36904838

RESUMO

As the demands of various network-dependent services such as Internet of things (IoT) applications, autonomous driving, and augmented and virtual reality (AR/VR) increase, the fifthgeneration (5G) network is expected to become a key communication technology. The latest video coding standard, versatile video coding (VVC), can contribute to providing high-quality services by achieving superior compression performance. In video coding, inter bi-prediction serves to improve the coding efficiency significantly by producing a precise fused prediction block. Although block-wise methods, such as bi-prediction with CU-level weight (BCW), are applied in VVC, it is still difficult for the linear fusion-based strategy to represent diverse pixel variations inside a block. In addition, a pixel-wise method called bi-directional optical flow (BDOF) has been proposed to refine bi-prediction block. However, the non-linear optical flow equation in BDOF mode is applied under assumptions, so this method is still unable to accurately compensate various kinds of bi-prediction blocks. In this paper, we propose an attention-based bi-prediction network (ABPN) to substitute for the whole existing bi-prediction methods. The proposed ABPN is designed to learn efficient representations of the fused features by utilizing an attention mechanism. Furthermore, the knowledge distillation (KD)- based approach is employed to compress the size of the proposed network while keeping comparable output as the large model. The proposed ABPN is integrated into the VTM-11.0 NNVC-1.0 standard reference software. When compared with VTM anchor, it is verified that the BD-rate reduction of the lightweighted ABPN can be up to 5.89% and 4.91% on Y component under random access (RA) and low delay B (LDB), respectively.

2.
Ecotoxicol Environ Saf ; 243: 113962, 2022 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-35988379

RESUMO

This study aimed to examine the impact of chronic (30 days) exposure to polystyrene microplastics (PS-MPs) of different sizes (50 nm and 2 µm) and at different concentrations (0.5 µg/L and 100 mg/L) to marine copepod Tigriopus japonicus. Polystyrene microplastics affected survival rates in size- and concentration-dependent manners. The LC50s values of 50 nm and 2 µm PS-MPs were 0.10 mg/L and 3.92 mg/L, respectively. The developmental time was delayed by 50 nm PS-MPs, and Usp expression was downregulated. Reproduction was negatively affected by 2 µm PS-MPs even at environmentally relevant concentrations; however, the expression of Vtg was not altered. The production rates of reactive oxygen species and nitric oxide also increased after exposure to PS-MPs; but this effect was independent of particle size. The expression levels of Cat and Tnf, genes related to oxidative stress and inflammation, respectively, were upregulated by exposure to PS-MPs, independently of particle size. Meanwhile, the level of oxidative stress in T. japonicus was not significantly affected by PS-MPs at environmentally relevant concentrations. This study suggests that nano-sized PS-MPs are not always more toxic than micro-sized PS-MPs, and that oxidative stress is a key factor in determining the toxic effect on T. japonicus at high concentrations.


Assuntos
Copépodes , Poluentes Químicos da Água , Animais , Microplásticos , Plásticos , Poliestirenos/toxicidade , Reprodução , Poluentes Químicos da Água/toxicidade
3.
Bull Environ Contam Toxicol ; 98(2): 183-189, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27995293

RESUMO

Many studies of the toxic effects of zinc oxide nanoparticles (ZnO NPs) in aquatic organisms have been performed because of increasing ZnO NP use. However, the toxicological pathways are not understood. In this study, ZnO NPs were found to be more toxic than ZnSO4 to zebrafish larvae, but ZnO NP toxicity did not involve transcript alterations. Biological processes affected by ZnO NPs and ZnSO4 were investigated by performing ingenuity pathway analysis on differently expressed genes in larvae exposed to sub-lethal ZnO NP and ZnSO4 concentrations. We identified upregulated and downregulated differently expressed genes in fish exposed to ZnO NPs and ZnSO4, and found that ZnO NPs slightly induced cell differentiation and pathways associated with the immune system and activated several key genes involved in cancer cell signaling. The results may be key to predicting and elucidating the mechanisms involved in ZnO NP and ZnSO4 toxicity in zebrafish larvae.


Assuntos
Nanopartículas/toxicidade , Peixe-Zebra/genética , Óxido de Zinco/toxicidade , Sulfato de Zinco/toxicidade , Animais , Diferenciação Celular/efeitos dos fármacos , Diferenciação Celular/genética , Exposição Ambiental , Regulação da Expressão Gênica/efeitos dos fármacos , Larva/efeitos dos fármacos , Larva/genética , Transdução de Sinais/efeitos dos fármacos
4.
Biochem Biophys Res Commun ; 479(4): 753-758, 2016 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-27693782

RESUMO

Silver nanoparticles (AgNPs) have a strong antibacterial activity and the relevant modes of actions have regarded as direct or indirect causes of toxicity observed in the environment. In this study, the transcriptomic profiles in larval zebrafish (Danio rerio) exposed to AgNPs (about 50 nm in size) and AgNO3 as a comparative ionic silver were investigated and analyzed using differential expressed gene (DEG), Gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) pathway analyses. Results indicated that underlying molecular mechanisms are different each other. Interestingly, the global gene expression profiling showed that cell cycle pathway is affected by both AgNPs and dissolved Ag+, however its regulation pattern was opposite each other. To the best of our knowledge, the up-regulation of cell cycle pathway by AgNPs and down-regulation by Ag+ is the first reporting and suggests the distinguished toxicological perspective from a well-known hypothesis that Ag+ mainly regulates the cell cycle. This study provides novel insights onto the genotoxicological mechanisms of AgNPs.


Assuntos
Ciclo Celular/efeitos dos fármacos , Ciclo Celular/genética , Nanopartículas Metálicas/toxicidade , Prata/toxicidade , Animais , Cátions Monovalentes/química , Cátions Monovalentes/toxicidade , Regulação da Expressão Gênica/efeitos dos fármacos , Redes Reguladoras de Genes/efeitos dos fármacos , Larva/citologia , Larva/efeitos dos fármacos , Larva/genética , Nanopartículas Metálicas/química , Prata/química , Peixe-Zebra/genética , Peixe-Zebra/crescimento & desenvolvimento , Peixe-Zebra/metabolismo
5.
Reprod Biol Endocrinol ; 12: 102, 2014 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-25371027

RESUMO

BACKGROUND: Bisphenol A (BPA) is an applied chemical that is used in many industrial fields and is a potential endocrine disruption chemical (EDC) that is found in the environment. Bisphenol S (BPS) and polyethersulfone (PES) have been suggested as putative BPA alternatives. In this study, the estrogenic potency induced by the binding of 17-beta-estradiol (E2), BPA, BPS, PES and their metabolites formed by the rat liver S9 fraction to the human estrogen receptor (ER) was estimated. METHODS: We used an in vitro bioassay based on the luciferase reporter assay in MVLN cells to evaluate the estrogenic activity of 17-beta-estradiol (E2), BPA, BPS, PES (E2: 0.001 to 0.3 nM; BPA, BPS and PES: 0.0001 to 5 microM) and their metabolites (E2: 0.05 microM; BPA, BPS and PES: 0.1 mM) according to incubation times (0, 20 and 40 min). After chemical treatment to MVLN cells for 72 hrs, and the cell viability and luciferase intensity induced were estimated, from which the estrogenic activity of the chemicals tested was evaluated. RESULTS: BPA and BPS induced estrogenic activity whereas PES did not show any estrogenic activity in the concentrations tested. In an in vitro assay of metabolites, BPA metabolites displayed comparable estrogenic activity with BPA and metabolites of both BPS and PES showed increasing estrogenic activity. CONCLUSIONS: The results suggest that the metabolites of BPS and PES have estrogenic potential and the need for the assessment of both chemicals and their metabolites in other EDC evaluation studies. The estrogenic potency of PES and its metabolites is the first report in our best knowledge.


Assuntos
Disruptores Endócrinos/farmacologia , Estrogênios/farmacologia , Microssomos Hepáticos/metabolismo , Fenóis/farmacologia , Polímeros/farmacologia , Elementos de Resposta/efeitos dos fármacos , Sulfonas/farmacologia , Animais , Biotransformação , Sobrevivência Celular/efeitos dos fármacos , Disruptores Endócrinos/metabolismo , Estrogênios/metabolismo , Regulação Neoplásica da Expressão Gênica/efeitos dos fármacos , Genes Reporter/efeitos dos fármacos , Humanos , Cinética , Luciferases de Vaga-Lume/genética , Luciferases de Vaga-Lume/metabolismo , Células MCF-7 , Fenóis/metabolismo , Polímeros/metabolismo , Ratos , Receptores de Estrogênio/química , Receptores de Estrogênio/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sulfonas/metabolismo , Toxicocinética
6.
J Korean Med Sci ; 29(4): 536-43, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24753701

RESUMO

The aim of this study was to evaluate whether the clinical outcomes were associated with socioeconomic status (SES) in patients with acute myocardial infarction (AMI) who underwent percutaneous coronary intervention (PCI). The author analyzed 2,358 patients (64.9 ± 12.3 yr old, 71.5% male) hospitalized with AMI between November 2005 and June 2010. SES was measured by the self-reported education (years of schooling), the residential address (social deprivation index), and the national health insurance status (medical aid beneficiaries). Sequential multivariable modeling assessed the relationship of SES factors with 3-yr major adverse cardiovascular events (MACEs) and mortality after the adjustment for demographic and clinical factors. During the 3-yr follow-up, 630 (26.7%) MACEs and 322 (13.7%) all-cause deaths occurred in 2,358 patients. In multivariate Cox proportional hazards regression modeling, the only lower education of SES variables was associated with MACEs (hazard ratio [HR], 1.41; 95% confidence interval [CI], 1.04-1.91) and mortality (HR, 1.93; 95% CI, 1.16-3.20) in the patients with AMI who underwent PCI. The study results indicate that the lower education is a significant associated factor to increased poor clinical outcomes in patients with AMI who underwent PCI.


Assuntos
Angioplastia Coronária com Balão , Infarto do Miocárdio/terapia , Intervenção Coronária Percutânea , Doença Aguda , Fatores Etários , Idoso , Estudos de Coortes , Demografia , Feminino , Seguimentos , Humanos , Masculino , Pessoa de Meia-Idade , Infarto do Miocárdio/economia , Infarto do Miocárdio/mortalidade , Modelos de Riscos Proporcionais , Estudos Retrospectivos , Fatores de Risco , Fatores Sexuais , Classe Social , Fatores Socioeconômicos , Resultado do Tratamento
7.
J Hazard Mater ; 470: 134209, 2024 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-38581880

RESUMO

Weathered microplastics (MPs) exhibit different physicochemical properties compared to pristine MPs, thus, their effects on the environment and living organisms may also differ. In the present study, we investigated the gut-toxic effects of virgin polypropylene MPs (PP) and UV-weathered PP MPs (UV-PP) on zebrafish. The zebrafish were exposed to the two types of PP MPs at a concentration of 50 mg/L each for 14 days. After exposure, MPs accumulated primarily within the gastrointestinal tract, with UV-PP exhibiting a higher accumulation than PP. The ingestion of PP and UV-PP induced gut damage in zebrafish and increased the gene expression and levels of enzymes related to oxidative stress and inflammation, with no significant differences between the two MPs. Analysis of the microbial community confirmed alterations in the abundance and diversity of zebrafish gut microorganisms in the PP and UV-PP groups, with more pronounced changes in the PP-exposed group. Moreover, the Kyoto Encyclopedia of Genes and Genomes pathway analysis confirmed the association between changes in the gut microorganisms at the phylum and genus levels with cellular responses, such as oxidative stress, inflammation, and tissue damage. This study provides valuable insights regarding the environmental impact of MPs on organisms.


Assuntos
Microbioma Gastrointestinal , Microplásticos , Polipropilenos , Raios Ultravioleta , Poluentes Químicos da Água , Peixe-Zebra , Animais , Microplásticos/toxicidade , Polipropilenos/toxicidade , Microbioma Gastrointestinal/efeitos dos fármacos , Microbioma Gastrointestinal/efeitos da radiação , Poluentes Químicos da Água/toxicidade , Estresse Oxidativo/efeitos dos fármacos , Trato Gastrointestinal/efeitos dos fármacos , Trato Gastrointestinal/efeitos da radiação
8.
Sci Total Environ ; 858(Pt 2): 159904, 2023 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-36328264

RESUMO

Despite the curtailment of atmospheric condensing precursor gases during the Coronavirus disease 2019 (COVID-19) lockdown (LD) period, unexpected haze events via the formation of new particles and their subsequent growth have been identified. This study investigated the impact of emission reduction during the Chinese LD period on the new particle formation (NPF) frequency and corresponding particle number size distribution (PNSD) at three regional background atmospheric monitoring sites in the western coastal areas of the Korean Peninsula. During this duration, the number concentrations of the nucleation- (<25 nm) and accumulation-mode (>90 nm) particles significantly decreased in Baengryeong (BRY), showing decreases of 34% and 29%, respectively. Unlike BRY, the PNSD in Anmyeon (AMY), which is influenced by nearby industrial emissions, remained nearly unchanged during the LD period, possibly because the reduction in industrial emissions was not significant during the social distancing period enforced by Korea. Bongseong (BOS) showed a similar variation to that of BRY; however, the magnitude of the reduction was weaker because of its higher altitude compared to other sites. The cyclostationary empirical orthogonal function technique was applied to the measured PNSDs at the three sites to objectively classify NPF events. Because mode 1 of cyclostationary loading vectors commonly represented the typical diurnal variation of PNSD during regional NPF events at three sites, mode 1 of the corresponding principal component time series was used for NPF classification. The NPF frequency decreased by 7%, 1%, and 7% in BRY, AMY, and BOS, respectively, despite favorable meteorological conditions, such as increased temperature and insolation during the LD period. The diurnal variation in the sulfuric acid (H2SO4) proxy implied that the H2SO4 proxy acted as a determining factor for NPF events during the NPF occurrence time (8-12 local hours) in AMY and BOS; however, NPF occurrence in BRY was not connected to the H2SO4 proxy level. This suggests that BRY was more likely to be influenced by the reduction in organic species in the continental upwind regions, while the occurrence of NPF events in AMY and BOS can be suppressed in association with the distinct reduction in inorganic compounds represented by the H2SO4 proxy during the LD period.


Assuntos
Poluentes Atmosféricos , COVID-19 , Humanos , Material Particulado/análise , Poluentes Atmosféricos/análise , COVID-19/epidemiologia , Tamanho da Partícula , Monitoramento Ambiental/métodos , Controle de Doenças Transmissíveis , China/epidemiologia
9.
Chemosphere ; 299: 134317, 2022 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-35364087

RESUMO

As one of major types of microplastics (MPs), microfibers (MFs) are widely found in the marine ecosystem and can induce diverse impacts on various marine organisms. Sedentary species, such as mussels, can act as bioindicators for monitoring marine contamination. Hence, in this study, we used mussels (Mytilus galloprovincialis) to examine the toxicity of polyethylene terephthalate (PET) MFs of 100 µm size at concentrations of 0.0005, 0.1, 1, 10, and 100 mg/L for 32 days. PET MFs accumulated only in the stomachs and intestines of the mussels and caused digestive tubule atrophy. After exposure to PET MFs, no alteration in the mortality rate, shell height, length, and weight of the mussels was observed. However, the gonadal index decreased with increasing concentrations of PET MFs. This is because PET MFs decrease the sex hormones estradiol and testosterone in mussels, even at environmentally relevant concentrations. Furthermore, chronic exposure to PET MFs increased the activities of antioxidant-related (catalase and superoxide dismutase) and neurotoxicity-related (acetylcholine esterase) enzymes in the digestive gland and gill tissues of mussels. In addition, cellular immune parameters of apoptosis and DNA damage were observed in mussel hemocytes. Thus, this study demonstrates the risks of MPs in real marine environments by assessing how long-term exposure to low concentrations of PET MFs can cause potential sublethal impacts and reproductive failure in mussels.


Assuntos
Mytilus , Poluentes Químicos da Água , Animais , Ecossistema , Microplásticos , Plásticos/toxicidade , Polietilenotereftalatos , Poluentes Químicos da Água/análise , Poluentes Químicos da Água/toxicidade
10.
Mar Environ Res ; 168: 105320, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-33813088

RESUMO

Many studies have investigated the toxic effects of microplastics in marine organisms, but most studied nano-sized round microplastics at high concentrations and were not environmentally relevant. To understand the cellular toxicity of polyethylene terephthalate microfibers (PET-MFs) by length (50 and 100 µm), Mediterranean mussels (Mytilus galloprovincialis) were exposed to environmental (0.5 µg/L) and high (100 mg/L) MF concentrations for four days. Short PET-MFs accumulated in the lower intestinal organs of the mussels, but long PET-MFs were only observed in the upper intestinal organs. Both sized PET-MFs affected necrosis, DNA damage, reactive oxygen species, nitric oxide, and acetylcholinesterase (AChE) activity. Significant MF length-dependent effects occurred at environmentally relevant concentrations for DNA damage (100 µm MFs) and AChE activity (50 µm MFs). However, length effects disappeared at the higher exposure concentration. The current study provides potentially sensitive indicators to detect MFs exposure and the ecotoxicological implications of MFs in marine ecosystems.


Assuntos
Mytilus , Poluentes Químicos da Água , Animais , Ecossistema , Plásticos/toxicidade , Polietilenotereftalatos , Poluentes Químicos da Água/análise , Poluentes Químicos da Água/toxicidade
11.
Elementa (Wash D C) ; 9(1): 1-27, 2021 May 12.
Artigo em Inglês | MEDLINE | ID: mdl-34926709

RESUMO

The Korea-United States Air Quality (KORUS-AQ) field study was conducted during May-June 2016. The effort was jointly sponsored by the National Institute of Environmental Research of South Korea and the National Aeronautics and Space Administration of the United States. KORUS-AQ offered an unprecedented, multi-perspective view of air quality conditions in South Korea by employing observations from three aircraft, an extensive ground-based network, and three ships along with an array of air quality forecast models. Information gathered during the study is contributing to an improved understanding of the factors controlling air quality in South Korea. The study also provided a valuable test bed for future air quality-observing strategies involving geostationary satellite instruments being launched by both countries to examine air quality throughout the day over Asia and North America. This article presents details on the KORUS-AQ observational assets, study execution, data products, and air quality conditions observed during the study. High-level findings from companion papers in this special issue are also summarized and discussed in relation to the factors controlling fine particle and ozone pollution, current emissions and source apportionment, and expectations for the role of satellite observations in the future. Resulting policy recommendations and advice regarding plans going forward are summarized. These results provide an important update to early feedback previously provided in a Rapid Science Synthesis Report produced for South Korean policy makers in 2017 and form the basis for the Final Science Synthesis Report delivered in 2020.

12.
Radiology ; 256(2): 656-64, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20656846

RESUMO

PURPOSE: To classify peripheral pulmonary arterial pseudoaneurysms (PAPs) associated with infectious lung diseases according to angiographic findings and to determine treatment options for PAPs on the basis of angiographic classifications. MATERIALS AND METHODS: The institutional review board approved this study. A total of 24 patients with massive hemoptysis had PAPs that were detected at pulmonary computed tomographic (CT) angiography; underlying diseases were pulmonary tuberculosis (n = 16), a fungus ball (n = 5), lung abscess (n = 2), and pneumonia (n = 1). All patients underwent bronchial and nonbronchial systemic collateral arterial angiography and pulmonary and selective pulmonary angiography. On the basis of the angiographic findings, PAPs were classified into four types: PAPs visualized at nonselective right or left pulmonary angiography were defined as type A (n = 5), PAPs visualized at selective segmental or subsegmental pulmonary angiography were defined as type B (n = 10), PAPs apparent at bronchial and nonbronchial systemic collateral arterial angiography by means of a bronchopulmonary arterial shunt but not at selective pulmonary angiography were classified as type C (n = 5), and PAPs apparent at pulmonary CT angiography alone but not at catheter-directed angiography were classified as type D (n = 4). RESULTS: For type A or B PAPs, bronchial and nonbronchial systemic collateral arteries and pulmonary arteries were successively embolized. Hemoptysis was controlled for all type A and type B PAPs. For type C or type D PAPs, embolization alone of bronchial and nonbronchial systemic collateral arteries and follow-up pulmonary CT angiography were performed. Hemoptysis was not controlled in three of the nine patients: In those patients, percutaneous injection therapy (n = 2) and surgical resection (n = 1) were performed. CONCLUSION: Classification of PAPs on the basis of angiographic findings and determination of treatment options according to these findings are useful for the endovascular management of PAPs associated with massive hemoptysis.


Assuntos
Falso Aneurisma/diagnóstico por imagem , Angiografia/métodos , Hemoptise/diagnóstico por imagem , Artéria Pulmonar/diagnóstico por imagem , Tomografia Computadorizada por Raios X/métodos , Adulto , Idoso , Idoso de 80 Anos ou mais , Falso Aneurisma/cirurgia , Feminino , Hemoptise/cirurgia , Humanos , Masculino , Pessoa de Meia-Idade , Artéria Pulmonar/cirurgia , Reprodutibilidade dos Testes , Sensibilidade e Especificidade , Adulto Jovem
13.
World J Surg Oncol ; 8: 32, 2010 Apr 21.
Artigo em Inglês | MEDLINE | ID: mdl-20409316

RESUMO

BACKGROUND: Genomic alterations are important events in the origin and progression of various cancers, with DNA copy number changes associated with progression and treatment response in cancer. Array CGH is potentially useful in the identification of genomic alterations from primary tumor and blood in breast cancer patients. The aim of our study was to compare differences of DNA copy number changes in blood and tumor tissue in breast cancer. METHODS: DNA copy number changes in blood were compared to those in tumor tissue using array-comparative genomic hybridization in samples obtained from 30 breast cancer patients. The relative degree of chromosomal changes was analyzed using log2 ratios and data was validated by real-time polymerase chain reaction. RESULTS: Forty-six regions of gains present in more than 30% of the tissues and 70 regions of gains present in more than 30% of blood were identified. The most frequently gained region was chromosome 8q24. In total, agreement of DNA copy numbers between primary tumor and blood was minimal (Kappa = 0.138, p < 0.001). CONCLUSION: Although there was only a slight agreement of DNA copy number alterations between the primary tumor and the blood samples, the blood cell copy number variation may have some clinical significance as compared to the primary tumor in IDC breast cancer patients.


Assuntos
Neoplasias da Mama/sangue , Neoplasias da Mama/genética , Carcinoma Ductal de Mama/sangue , Carcinoma Ductal de Mama/genética , Variações do Número de Cópias de DNA/genética , DNA de Neoplasias/sangue , Genoma Humano , Adulto , Idoso , Neoplasias da Mama/patologia , Carcinoma Ductal de Mama/patologia , Hibridização Genômica Comparativa , Feminino , Humanos , Pessoa de Meia-Idade , Análise de Sequência com Séries de Oligonucleotídeos , Reação em Cadeia da Polimerase , Prognóstico
14.
Mar Environ Res ; 153: 104838, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-31733910

RESUMO

The indiscriminate use of plastic has greatly increased microplastic contamination risk in the marine environment. Microplastics can affect all marine life via the food web, from primary producers (e.g., microalgae) to final consumers (e.g., carnivorous fish). Thus, several studies have attempted to evaluate microplastic toxicity, but information about the underlying mechanisms of their effect is limited. Therefore, in this study, we examined multiple factors that could contribute to microplastic-induced toxicity. We investigated the potential molecular effects of microplastic size and exposure time. We exposed the marine copepod Tigriopus japonicus to 50 nm and 10 µm polystyrene microbeads. We found that both size and exposure time increased intracellular levels of reactive oxygen species. In addition, antioxidant-related gene expression was modulated and antioxidant enzyme activities were changed significantly. The results of this study provide important insights into the molecular mechanisms of microplastic-induced toxicity in a marine organism.

15.
Mol Biol Rep ; 36(7): 1767-78, 2009 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18975135

RESUMO

Lung tumor cell DNA copy number alteration (CNA) was expected to display specific patterns such as a large-scale amplification or deletion of chromosomal arms, as previously published data have reported. Peripheral blood mononuclear cell (PBMC) CNA however, was expected to show normal variations in cancer patients as well as healthy individuals, and has thus been used as normal control DNA samples in various published studies. We performed array CGH to measure and compare genetic changes in terms of the CNA of PBMC samples as well as DNA isolated from tumor tissue samples, obtained from 24 non-small cell lung cancer patients. Contradictory to expectations, our studies showed that the PBMC CNA also showed chromosomal variant regions. The list included well-known tumor-associated NTRK1, FGF8, TP53, and TGFbeta1 genes and potentially novel oncogenes such as THPO (3q27.1), JMJD1B, and EGR1 (5q31.2), which was investigated in this study. The results of this study highlighted the connection between PBMC and tumor cell genomic DNA in lung cancer patients. However, the application of these studies to cancer prognosis may pose a challenge due to the large amount of information contained in genetic predisposition and family history that has to be processed for useful downstream clinical applications.


Assuntos
Carcinoma Pulmonar de Células não Pequenas/genética , Carcinoma Pulmonar de Células não Pequenas/patologia , Hibridização Genômica Comparativa , Impressões Digitais de DNA , Leucócitos Mononucleares/metabolismo , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/patologia , Adulto , Idoso , Linhagem Celular Tumoral , Aberrações Cromossômicas , Cromossomos Humanos/genética , Feminino , Dosagem de Genes , Regulação Neoplásica da Expressão Gênica , Genes Neoplásicos , Humanos , Masculino , Pessoa de Meia-Idade , Reprodutibilidade dos Testes , Reação em Cadeia da Polimerase Via Transcriptase Reversa
16.
Lung ; 187(3): 165-72, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19352772

RESUMO

Emphysema is the major component of chronic obstructive pulmonary disease (COPD), which is the fourth leading cause of death in the world. Several epidemiologic studies suggest that genetic factors may have an important role in the pathogenesis of emphysema. We analyzed the gene expression profiles of chromosomal aberrations using array comparative genomic hybridization (array CGH) in 32 patients with emphysema to identify the candidate genes that might be causally involved in the pathogenesis of emphysema. Copy number gains and losses were detected in chromosomal regions, and the corresponding genes were confirmed by real-time polymerase chain reaction. Several frequently altered loci were found, including a gain at 5p15.33 (60% of the study subjects), and a loss at 7q22.1 (31% of the study subjects). DNA gains were identified at a high frequency at 1p, 5p, 11p, 12p, 15q, 17p, 18q, 21q, and 22q, whereas DNA losses were frequently found at 7q and 22q. We found that the fold change levels were highest at the CYP4B1 (1p33), JUN (1p32.1), NOTCH2 (1p12-p11.2), SDHA (5p15.33), KCNQ1 (11p15.5-p15.4), NINJ2 (12p13.33), PCSK6 (15q26.3), ABR (17p13.3), CTDP1 (18q23), RUNX1 (21q22.12) and HDAC10 (22q13.33) gene loci. We also observed losses in the MUC17 (7q22.1), COMT (22q11.21) and GSTT1 (22q11.2) genes. These studies show that array CGH is a useful tool for the identification of gene alterations in cases of emphysema and that the aforementioned genes might represent potential candidate genes involved in the pathogenesis of emphysema.


Assuntos
Aberrações Cromossômicas , Hibridização Genômica Comparativa , Perfilação da Expressão Gênica/métodos , Análise de Sequência com Séries de Oligonucleotídeos , Enfisema Pulmonar/genética , Idoso , Idoso de 80 Anos ou mais , Feminino , Dosagem de Genes , Predisposição Genética para Doença , Humanos , Masculino , Pessoa de Meia-Idade , Reação em Cadeia da Polimerase , Fatores de Risco
17.
J Clin Neurosci ; 16(2): 295-301, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19056275

RESUMO

We aimed to use array comparative genomic hybridization (CGH) to identify chromosomal loci that contribute to the pathogenesis of ruptured intracranial aneurysms (IAs) in a Korean population and to confirm the results using real-time polymerase chain reaction (PCR). Twenty-three patients with ruptured IAs were enrolled in this study. Array CGH revealed copy number aberrations in 19 chromosomal regions. Chromosomal gains were identified at a high frequency in regions 1p12, 4q24, 5p15.31, 5p15.33, 6p12.2, 6q22.33, 7p21.1, 9q22.1, 10q24.32, 10q26.3, 12q13.13, 17p12, 18q12.3, 18q23, 19p13.3, 20q13.33, 21q11.2, and 21q22.3, whereas chromosomal losses were identified at 15q11.2 and 22q11.21. Real-time PCR confirmed the results of the array CGH studies of the COL6A2, GRIN3B, MUC17, and PRODH genes. This is the first study to identify candidate regions by array CGH in patients with IAs. The identification of genes that may predispose an individual to the development of IAs may lead to a better understanding of the mechanism of IA formation. Multicenter studies comparing cohorts of patients of different ethnicities are needed to better understand the mechanism of IA formation.


Assuntos
Aneurisma Roto/genética , Aberrações Cromossômicas , Aneurisma Intracraniano/genética , Adulto , Idoso , Idoso de 80 Anos ou mais , Aneurisma Roto/complicações , Mapeamento Cromossômico , Colágeno Tipo VI/genética , Hibridização Genômica Comparativa/métodos , Feminino , Humanos , Aneurisma Intracraniano/complicações , Coreia (Geográfico) , Masculino , Pessoa de Meia-Idade , Mucinas/genética , Análise de Sequência com Séries de Oligonucleotídeos/métodos , Prolina Oxidase/genética , Receptores de N-Metil-D-Aspartato/genética
18.
Int J Neurosci ; 118(9): 1331-45, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18698514

RESUMO

Parkinson disease (PD) is a common neurodegenerative disorder, characterized by the loss of midbrain dopamine neurons and Lewy body inclusions. We investigated array CGH to analyze gain or loss of genetic material from 30 patients with PD. We identified the frequent copy number variations in PD; gains in 1p21.1, 4p15.31, 5p15.33, 6q24.1, 7q35, 8q24.3, 10q26.3, 11p15.5-15.4, 12q21.2, 16p13.3, 18q12.3 and 22q13.31, and losses in 1p36.33, and 5q13.2. These findings enable a better description of genetic variations in PD, and could provide a foundation for understanding the critical regions of the genome that may be involved in the development of PD.


Assuntos
Mapeamento Cromossômico/métodos , Hibridização Genômica Comparativa , Análise de Sequência com Séries de Oligonucleotídeos , Doença de Parkinson/genética , Idoso , Idoso de 80 Anos ou mais , Hibridização Genômica Comparativa/métodos , Feminino , Variação Genética/genética , Humanos , Masculino , Pessoa de Meia-Idade , Análise de Sequência com Séries de Oligonucleotídeos/métodos , Doença de Parkinson/diagnóstico
19.
Korean J Hepatol ; 14(2): 168-77, 2008 Jun.
Artigo em Coreano | MEDLINE | ID: mdl-18617764

RESUMO

BACKGROUND/AIMS: Transcatheter arterial chemoembolization (TACE) is a major modality in the treatment of unresectable hepatocellular carcinoma. Acute renal failure (ARF) may occur after TACE because of underlying liver cirrhosis and the presence of radiocontrast agent. However, the data available regarding this complication are variable and limited. The aim of this study was to determine the incidence and associated risk factors of ARF after TACE. METHODS: From January 2001 to December 2004, a total of 632 procedures were performed in 377 patients. Of these, the cases with high creatinine levels (> or = 2 mg/dL) before TACE and with incomplete medical records were excluded, which resulted in 463 procedures in 319 patients (256 males and 63 females; age 58.7+/-9.9 years, mean+/-SD) being examined for this study. Various clinical and radiological data before and after the procedure were reviewed retrospectively. RESULTS: ARF occurred following 15 (3.2%) of the 463 procedures within 7 days of TACE. Univariate analysis revealed that serum albumin levels (P=0.025), Model for End-Stage Liver Disease score (P=0.001), the distribution of Child-Pugh class (P=0.027), and the proportions of patients with ascites (P<0.001), using diuretics (P=0.010), and with a serum creatinine level > or = 1.5 mg/dL (P=0.023) differed significantly between patients with or without ARF after TACE. In multivariate analysis, the presence of ascites (P=0.005; odds ratio, 5.297) and serum creatinine level > or = 1.5 mg/dL (P=0.007; odds ratio, 7.358) were independently associated with the development of ARF. CONCLUSIONS: The incidence of ARF after TACE was 3.2%, and the presence of ascites and an abnormal baseline serum creatinine level were the risk factors for ARF.


Assuntos
Injúria Renal Aguda/epidemiologia , Carcinoma Hepatocelular/terapia , Quimioembolização Terapêutica/efeitos adversos , Neoplasias Hepáticas/terapia , Injúria Renal Aguda/etiologia , Adulto , Idoso , Idoso de 80 Anos ou mais , Carcinoma Hepatocelular/complicações , Carcinoma Hepatocelular/diagnóstico por imagem , Quimioembolização Terapêutica/mortalidade , Creatinina/sangue , Feminino , Humanos , Incidência , Neoplasias Hepáticas/complicações , Neoplasias Hepáticas/diagnóstico por imagem , Masculino , Pessoa de Meia-Idade , Análise Multivariada , Radiografia , Estudos Retrospectivos , Fatores de Risco , Índice de Gravidade de Doença , Análise de Sobrevida
20.
Mar Pollut Bull ; 129(1): 231-240, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29680542

RESUMO

The increasing global contamination of plastics in marine environments is raising public concerns about the potential hazards of microplastics to environmental and human health. Microplastics formed by the breakdown of larger plastics are typically irregular in shape. The objective of this study was to compare the effects of spherical or irregular shapes of microplastics on changes in organ distribution, swimming behaviors, gene expression, and enzyme activities in sheepshead minnow (Cyprinodon variegatus). Both types of microplastics accumulated in the digestive system, causing intestinal distention. However, when compared to spherical microplastics, irregular microplastics decreased swimming behavior (i.e., total distance travelled and maximum velocity) of sheepshead minnow. Both microplastics generated cellular reactive oxygen species (ROS), while ROS-related molecular changes (i.e., transcriptional and enzymatic characteristics) differed. This study provides toxicological insights into the impacts of environmentally relevant (fragmented) microplastics on fish and improves our understanding of the environmental effects of microplastics in the ecosystem.


Assuntos
Cyprinidae/metabolismo , Plásticos/toxicidade , Espécies Reativas de Oxigênio/metabolismo , Poluentes Químicos da Água/toxicidade , Animais , Cyprinidae/genética , Cyprinidae/fisiologia , Conteúdo Gastrointestinal/química , Expressão Gênica/efeitos dos fármacos , Modelos Teóricos , Plásticos/análise , Propriedades de Superfície , Natação , Poluentes Químicos da Água/análise
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