Mode of Action of Kanglemycin A, an Ansamycin Natural Product that Is Active against Rifampicin-Resistant Mycobacterium tuberculosis.

Antibiotic-resistant bacterial pathogens pose an urgent healthcare threat, prompting a demand for new medicines. We report the mode of action of the natural ansamycin antibiotic kanglemycin A (KglA). KglA binds bacterial RNA polymerase at the rifampicin-binding pocket but maintains potency against RNA polymerases containing rifampicin-resistant mutations. KglA has antibiotic activity against rifampicin-resistant Gram-positive bacteria and multidrug-resistant Mycobacterium tuberculosis (MDR-M. tuberculosis). The X-ray crystal structures of KglA with the Escherichia coli RNA polymerase holoenzyme and Thermus thermophilus RNA polymerase-promoter complex reveal an altered-compared with rifampicin-conformation of KglA within the rifampicin-binding pocket. Unique deoxysugar and succinate ansa bridge substituents make additional contacts with a separate, hydrophobic pocket of RNA polymerase and preclude the formation of initial dinucleotides, respectively. Previous ansa-chain modifications in the rifamycin series have proven unsuccessful. Thus, KglA represents a key starting point for the development of a new class of ansa-chain derivatized ansamycins to tackle rifampicin resistance.

The Sensitivity of Structure to Ionic Radius and Reaction Stoichiometry: A Crystallographic Study of Metal Coordination and Hydrogen Bonding in Barbiturate Complexes of All Five Alkali Metals Li-Cs.

A systematic study has been conducted on barbiturate complexes of all five alkali metals, Li-Cs, prepared from metal carbonates or hydroxides in an aqueous solution without other potential ligands present, varying the stoichiometric ratio of metal ion to barbituric acid (BAH). Eight polymeric coordination compounds (two each for Na, K, and Rb and one each for Li and Cs) have been characterised by single-crystal X-ray diffraction. All contain some combination of barbiturate anion BA- (necessarily in a 1:1 ratio with the metal cation M+), barbituric acid, and water. All organic species and water molecules are coordinated to the metal centres via oxygen atoms as either terminal or bridging ligands. Coordination numbers range from 4 (for the Li complex) to 8 (for the Cs complex). Extensive hydrogen bonding plays a significant role in all the crystal structures, almost all of which include pairs of N-H···O hydrogen bonds linking BA- and/or BAH components into ribbons extending in one dimension. Factors influencing the structure adopted by each compound include cation size and reaction stoichiometry as well as hydrogen bonding.

Expanding Luminescence Horizons in Macropolyhedral Heteroboranes.

Luminescence is observed in three novel macropolyhedral nineteen- and eighteen-vertex chalcogenaboranes: Se2B17H17 (1), SeB17H19 (3) and SeB18H20 (4). This led us to the recognition that previously published macropolyhedral heteroborane species might also exhibit luminescence. Thus, the known nineteen- and eighteen-vertex dithiaboranes S2B17H17 (2), n-S2B16H16 (5) and i-S2B16H16 (6) were synthesised and also found to exhibit a range of luminescent properties. These macropolyhedral species are very different from the previously unique fluorescent binary borane B18H22 in terms of their structural architectures, by the presence of borane cluster hetero atoms, and, as in the cases of 5 and 6, that their synthetic origins are not derived simply through the modification of B18H22 itself. They consequently greatly expand the possibilities of finding new luminescent inorganic borane species.

A Window into the Workings of anti-B18H22 Luminescence-Blue-Fluorescent Isomeric Pair 3,3'-Cl2-B18H20 and 3,4'-Cl2-B18H20 (and Others).

The action of AlCl3 on room-temperature tetrachloromethane solutions of anti-B18H22 (1) results in a mixture of fluorescent isomers, 3,3'-Cl2-B18H20 (2) and 3,4'-Cl2-B18H20 (3), together isolated in a 76% yield. Compounds 2 and 3 are capable of the stable emission of blue light under UV-excitation. In addition, small amounts of other dichlorinated isomers, 4,4'-Cl2-B18H20 (4), 3,1'-Cl2-B18H20 (5), and 7,3'-Cl2-B18H20 (6) were isolated, along with blue-fluorescent monochlorinated derivatives, 3-Cl-B18H21 (7) and 4-Cl-B18H21 (8), and trichlorinated species 3,4,3'-Cl3-B18H19 (9) and 3,4,4'-Cl3-B18H19 (10). The molecular structures of these new chlorinated derivatives of octadecaborane are delineated, and the photophysics of some of these species are discussed in the context of the influence that chlorination bears on the luminescence of anti-B18H22. In particular, this study produces important information on the effect that the cluster position of these substitutions has on luminescence quantum yields and excited-state lifetimes.

Macropolyhedral Chalcogenaboranes: Insertion of Selenium into the Isomers of B18H22.

High yields of novel macropolyhedral selenaboranes are reported. Reactions of the monoanions of the syn- and anti-isomers of B18H22 with powdered selenium in THF variously give new macropolyhedral selenaboranes: 19-vertex [SeB18H19]- anion 1, 19-vertex [SeB18H21]- anion 2, 20-vertex [Se2B18H19]- anion 3, and 19-vertex [Se2B17H18]- anion 4. Single-cluster [hypho-Se2B6H9]- anion 5 and neutral arachno-Se2B7H9 6 also result. All of the macropolyhedrals 1, 2, 3, and 4 are characterized by NMR spectroscopy and mass spectrometry, and by single-crystal X-ray diffraction analyses. Anions 1 and 2 each consist of an 11-vertex subcluster joined by a common two-boron edge to a 10-vertex subcluster. Anion 3 consists of an 11-vertex subcluster joined by a common boron atom and an interboron link to an arachno-type 10-vertex subcluster. Unusually, anion 3 incorporates a hexagonal pyramidal intracluster structural motif in its 11-vertex subcluster. Anion 4 entails two arachno-type 10-vertex subclusters joined by a common boron atom, and with an additional intercluster boron-boron link. NMR data for syn-B18H22 and its mono- and dianions 7 and 8 and single-crystal X-ray diffraction results for these anions and also the monoanion 9 of anti-B18H22 are also reported. The oxaborane [µ-(8,9)-O-syn-B18H20]2- dianion 10 was serendipitously formed during the work and also characterized by a single-crystal X-ray diffraction study. Experimental NMR and structural findings are supported by DFT calculations throughout.

A Reversible NO-Triggered Multiple Metallaborane Cluster Fusion by Ligand Expulsion/Addition from (PMe2Ph)4Pt2B10H10 to Afford (PMe2Ph)8Pt8B40H40 and (PMe2Ph)5Pt4B20H20.

The dimetallic boron hydride cluster, (PMe2Ph)4Pt2B10H10 (1-Pt2), is known to reversibly sequester small molecules (e.g., O2, CO, and SO2) across its Pt-Pt cluster vector. Here, we report the very different effect of the addition of nitric oxide (NO) to solutions of (1-Pt2) that prompts the elimination of some of its phosphine ligands and the autofusion of the resultant {(PMe2Ph)xPt2B10H10} units to afford the metallaborane conglomerates (PMe2Ph)8Pt8B40H40 (2-Pt8, 38%) and (PMe2Ph)5Pt4B20H20 (3-Pt4, 34%). Single-crystal X-ray studies of these multicluster assemblies reveal the links between the clusters to be a combination of both Pt-Pt bonds and Pt-µH-B 2-electron, 3-center bonds in (2-Pt8) and Pt-µH-B 2-electron, 3-center bonds in (3-Pt4). For compound (2-Pt8), the cluster assemblage can be effectively reversed by the addition of ethyl isonitrile (EtNC) to afford (EtNC)3(PMe2Ph)2Pt2B10H10 4 in quantitative yield. The compounds were characterized by mass spectrometry, multielement NMR spectroscopy, and single-crystal X-ray diffraction studies.

Swollen Polyhedral Volume of the anti-B18H22 Cluster via Extensive Methylation: anti-B18H8Cl2Me12.

Methylation of anti-B18H22 (1) affords the first example of alkyl substitution of terminal hydrogen atoms on the fluorescent octadecaborane-22 molecule to give highly methylated 2,2'-Cl2-1,1',3,3',4,4',7,7',8,8',10,10'-Me12-anti-B18H8 (2). This extensive chemical substitution leads to a swelling in the polyhedral volume of the 18-vertex boron atomic skeleton of the molecule and an enhancement of the absorption and solubility characteristics of this highly fluorescent molecule. We propose this "swollen polyhedral volume" to be the result of a marked increase in the relative positivity of the "cluster-only total charge" of the boron atomic skeleton caused by the combined electron-withdrawing capacity of the 12 methyl groups. Enhancement in the absorption and solubility properties may be crucial in the design of new borane-based laser materials.

A Series of Ultra-Efficient Blue Borane Fluorophores.

We present the first examples of alkylated derivatives of the macropolyhedral boron hydride, anti-B18H22, which is the gain medium in the first borane laser. This new series of ten highly stable and colorless organic-inorganic hybrid clusters are capable of the conversion of UVA irradiation to blue light with fluorescence quantum yields of unity. This study gives a comprehensive description of their synthesis, isolation, and structural characterization together with a delineation of their photophysical properties using a combined theoretical and experimental approach. Treatment of anti-B18H22 1 with RI (where R = Me or Et) in the presence of AlCl3 gives a series of alkylated derivatives, Rx-anti-B18H22-x (where x = 2 to 6), compounds 2-6, in which the 18-vertex octadecaborane cluster architectures are preserved and yet undergo a linear "polyhedral swelling", depending on the number of cluster alkyl substituents. The use of dichloromethane solvent in the synthetic procedure leads to dichlorination of the borane cluster and increased alkylation to give Me11-anti-B18H9Cl2 11, Me12-anti-B18H8Cl2 12, and Me13-anti-B18H7Cl2 13. All new alkyl derivatives are highly stable, extremely efficient (ΦF = 0.76-1.0) blue fluorophores (λems = 423-427 nm) and are soluble in a wide range of organic solvents and also a polystyrene matrix. The Et4-anti-B18H18 derivative 4b crystallizes from pentane solution in two phases with consequent multiabsorption and multiemission photophysical properties. An ultrafast transient UV-vis absorption spectroscopic study of compounds 4a and 4b reveals that an efficient excited-state absorption at the emission wavelength inhibits the laser performance of these otherwise remarkable luminescent molecules. All these new compounds add to the growing portfolio of octadecaborane-based luminescent species, and in an effort to broaden the perspective on their highly emissive photophysical properties, we highlight emerging patterns that successive substitutions have on the molecular size of the 18-vertex borane cluster structure and the distribution of the electron density within.

Macropolyhedral Nickelaboranes from the Metal-Assisted Fusion of KB9H14.

The reaction of K[arachno-B9H14] with [NiCl2(dppe)] produces four new 19-vertex macropolyhedral metallaboranes that result from borane cluster fusion: [9'-(dppe)-9'-Ni-anti-B18H20] (1) and isomeric [11'-(dppe)-11'-Ni-syn-B18H20] (2), together with the chlorine-substituted derivative of 1, [5'-Cl-9'-(dppe)-9'-Ni-anti-B18H19] (3), and the 18-vertex cluster compound [7'-(dppe)-7'-anti-NiB17H21] (4). Two closo 10-vertex single-cluster species, [1-(dppe)-1-closo-NiB9H7Cl2] (5) and [1-(dppe)-1-closo-NiB9H7Cl(OH)] (6), were also isolated from the reaction. The production of the metalated syn-octadecaborane isomer 2 from the fusion of two arachno-nonaborate clusters is the first such case to be observed; in all other reported cases fusion has resulted in products with the anti-octadecaboranyl bis-nido configuration.

The development and exploitation of synchrotron single-crystal diffraction for chemistry and materials.

A historical account is given of the 25-year development of dedicated synchrotron beamlines for single-crystal diffraction as applied to the so-called small-molecule fields of chemistry and materials science. Designs have drawn on previous successful models in macromolecular crystallography, with appropriate modifications in view of the different properties and behaviour of the respective sample types. Key factors in making these facilities attractive and productive for users include familiarity of operational procedures and the availability of experimental techniques and features normally found in local chemical crystallography laboratories, especially for the handling of samples and processing of diffraction data. Beamlines dedicated to single-crystal diffraction rather than shared with other techniques can be optimized for effective and efficient use. The experience gained from the original design, development and exploitation of stations 9.8 and 16.2SMX at the Daresbury Laboratory Synchrotron Radiation Source and beamline 11.3.1 at the Advanced Light Source have led to highly productive current facilities at ALS beamline 12.2.1 and Diamond Light Source beamline I19, including the recent introduction of remote-access operation. Such facilities have generated and continue to provide major impact in academic and commercial research that could otherwise not be achieved, including patents and applications in pharmaceuticals, energy and gas storage systems, and government policy. This article is part of the theme issue 'Fifty years of synchrotron science: achievements and opportunities'.

Structural and Synthetic Insights into Pyridine Homocouplings Mediated by a ß-Diketiminato Magnesium Amide Complex.

The reaction of [(Dipp Nacnac)Mg(TMP)] (1) with 4-subtituted pyridines proceeds via sequential regioselective metallation and 1,2-addition to furnish a range of symmetric 4,4'-R2 -2,2'-bipyridines in good yield, representing a new entry into bipyridine synthesis. Interestingly, the reaction of 1 with 2-OMe-pyridine led to formation of asymmetric bipyridine 6, resulting from the C6-magnesiation of the heterocycle followed by a C-C coupling step by addition to the C2 position of a second, non-metallated molecule, and subsequent elimination of [Dipp NacnacMgOMe]2 (7). Synthesis combined with spectroscopic and structural analysis help rationalise the underlying processes resulting in the observed reactivity, and elucidate the key role that the sterically encumbered ß-diketiminate ligand plays in determining regioselectivity.

Bonding Insights from Structural and Spectroscopic Comparisons of {SnW5 } and {TiW5 } Alkoxido- and Aryloxido-Substituted Lindqvist Polyoxometalates.

Incorporation of {MX}n+ groups into polyoxometalates (POMs) provides the means not only to introduce reactivity and functionality but also to tune the electronic properties of the oxide framework by varying M, X and n. In order to elucidate the factors responsible for differences in reactivity between {TiW5 } and {SnW5 } Lindqvist-type hexametalates, a series of alkoxido- and aryloxido-tin substituted POMs (nBu4 N)3 [(RO)SnW5 O18 ] (R=Me, Et, iPr and tBu) and (nBu4 N)3 [(ArO)SnW5 O18 ] (Ar=C6 H5 , 4-MeC6 H5 , 4-tBuC6 H5 , 4-HOC6 H4 , 3-HOC6 H4 and 2-CHOC6 H4 ) has been structurally characterised and studied by multinuclear NMR (1 H, 13 C, 17 O, 119 Sn and 183 W) and FTIR spectroscopy. Spectroscopic and structural parameters were compared with those of titanium-substituted homologues and, when coupled with theoretical studies, indicated that Sn-OR and Sn-OAr bonds are ionic with little π-contribution, whereas Ti-OR and Ti-OAr bonds are more covalent with π-bonding that is more prevalent for Ti-OR than Ti-OAr. This experimental and theoretical analysis of bonding in a homologous series of reactive POMs is the most extensive and detailed to date, and reveals factors which account for significant differences in reactivity between tin and titanium congeners.

Push-pull quinoidal porphyrins.

A family of push-pull quinoidal porphyrin monomers has been prepared from a meso-formyl porphyrin by bromination, thioacetal formation, palladium-catalyzed coupling with malononitrile and oxidation with DDQ. Attempts at extending this synthesis to a push-pull quinoidal/cumulenic porphyrin dimer were not successful. The crystal structures of the quinoidal porphyrins indicate that there is no significant contribution from singlet biradical or zwitterionic resonance forms. The crystal structure of an ethyne-linked porphyrin dimer shows that the torsion angle between the porphyrin units is only about 3°, in keeping with crystallographic results on related compounds, but contrasting with the torsion angle of about 35° predicted by computational studies. The free-base quinoidal porphyrin monomers form tightly π-stacked layer structures, despite their curved geometries and bulky aryl substituents.

Utilising Sodium-Mediated Ferration for Regioselective Functionalisation of Fluoroarenes via C-H and C-F Bond Activations.

Pairing iron bis(amide) Fe(HMDS)2 with Na(HMDS) to form new sodium ferrate base [(dioxane)0.5 ⋅NaFe(HMDS)3 ] (1) enables regioselective mono and di-ferration (via direct Fe-H exchange) of a wide range of fluoroaromatic substrates under mild reaction conditions. Trapping of several ferrated intermediates has provided key insight into how synchronised Na/Fe cooperation operates in these transformations. Furthermore, using excess 1 at 80 °C switches on a remarkable cascade process inducing the collective twofold C-H/threefold C-F bond activations, where each C-H bond is transformed to a C-Fe bond whereas each C-F bond is transformed into a C-N bond.

Structural and Mechanistic Insights into s-Block Bimetallic Catalysis: Sodium Magnesiate-Catalyzed Guanylation of Amines.

To advance the catalytic applications of s-block mixed-metal complexes, sodium magnesiate [NaMg(CH2 SiMe3 )3 ] (1) is reported as an efficient precatalyst for the guanylation of a variety of anilines and secondary amines with carbodiimides. First examples of hydrophosphination of carbodiimides by using a Mg catalyst are also described. The catalytic ability of the mixed-metal system is much greater than that of its homometallic components [NaCH2 SiMe3 ] and [Mg(CH2 SiMe3 )2 ]. Stoichiometric studies suggest that magnesiate amido and guanidinate complexes are intermediates in these catalytic routes. Reactivity and kinetic studies imply that these guanylation reactions occur via (tris)amide intermediates that react with carbodiiimides in insertion steps. The rate law for the guanylation of N,N'-diisopropylcarbodiimide with 4-tert-butylaniline catalyzed by 1 is first order with respect to [amine], [carbodiimide], and [catalyst], and the reaction shows a large kinetic isotopic effect, which is consistent with an amine-assisted rate-determining carbodiimide insertion transition state. Studies to assess the effect of sodium in these transformations denote a secondary role with little involvement in the catalytic cycle.

Circularly Polarized Luminescence from Helically Chiral N,N,O,O-Boron-Chelated Dipyrromethenes.

Helically chiral N,N,O,O-boron chelated dipyrromethenes showed solution-phase circularly polarized luminescence (CPL) in the red region of the visible spectrum (λem (max) from 621 to 663 nm). The parent dipyrromethene is desymmetrised through O chelation of boron by the 3,5-ortho-phenolic substituents, inducing a helical chirality in the fluorophore. The combination of high luminescence dissymmetry factors (|glum | up to 4.7 ×10(-3) ) and fluorescence quantum yields (ΦF up to 0.73) gave exceptionally efficient circularly polarized red emission from these simple small organic fluorophores, enabling future application in CPL-based bioimaging.

Grignard-mediated reduction of 2,2,2-trichloro-1-arylethanones.

2,2,2-Trichloro-1-aryl-ethanones can be reduced by RMgX to the corresponding 2,2-dichloro-1-arylethen-1-olates and trapped with a range of electrophiles resulting in either reduction, reduction/aldol, reduction/Claisen condensation or reduction/aldol-Tishchenko products. In addition we demonstrate that 2,2-dichloro-1-arylethen-1-olates undergo counter-ion controlled Darzens condensations, which can be followed by a thermal rearrangement as a route to 1,3-diaryl-3-chloropropane-1,2-diones.

Synthesis and crystal structure of a silver(I) 6-methylmercaptopurine riboside complex.

Silver nitrate reacts with 6-methylmercaptopurine riboside (6-MMPR) in aqueous solution containing methanol and dimethyl sulfoxide at room temperature to give a colourless crystalline complex, namely, bis(6-methylmercaptopurine riboside-κN7)(nitrato-κ2O,O')silver(I) 2.32-hydrate, [Ag(NO3)(C11H14N4O4S)2]·2.32H2O. The crystal structure, determined from synchrotron diffraction data, shows a central AgI ion on a crystallographic twofold rotation axis, coordinated in an almost linear fashion by two 6-MMPR ligands via atom N7 (purine numbering), with the nitrate counter-ion loosely coordinated as a bidentate ligand, forming a discrete molecular complex as an approximate dihydrate. The complex and water molecules are connected in a three-dimensional network by hydrogen bonding.

Plasticity and fracture in drying colloidal films.

Cracks in drying colloidal dispersions are typically modeled by elastic fracture mechanics, which assumes that all strains are linear, elastic, and reversible. We tested this assumption in films of a hard latex, by intermittently blocking evaporation over a drying film, thereby relieving the film stress. Here we show that although the deformation around a crack tip has some features of brittle fracture, only 20%-30% of the crack opening is relieved when it is unloaded. Atomic force micrographs of crack tips also show evidence of plastic deformation, such as microcracks and particle rearrangement. Finally, we present a simple scaling argument showing that the yield stress of a drying colloidal film is generally comparable to its maximum capillary pressure, and thus that the plastic strain around a crack will normally be significant. This also suggests that a film's fracture toughness may be increased by decreasing the interparticle adhesion.

Light-induced rearrangement of thioether-substituted phosphanide ligands: scope and limitations of a remarkable isomerization.

Treatment of the thioether-substituted secondary phosphanes R(2)PH(C6H4-2-SR(1)) [R(2) = (Me3Si)2CH, R(1) = Me (1PH), iPr (2PH), Ph (3PH); R(2) = tBu, R(1) = Me (4PH); R(2) = Ph, R(1) = Me (5PH)] with nBuLi yields the corresponding lithium phosphanides, which were isolated as their THF (1-5Pa) and tmeda (1-5Pb) adducts. Solid-state structures were obtained for the adducts [R(2)P(C6H4-2-SR(1))]Li(L)n [R(2) = (Me3Si)2CH, R(1) = nPr, (L)n = tmeda (2Pb); R(2) = (Me3Si)2CH, R(1) = Ph, (L)n = tmeda (3Pb); R(2) = Ph, R(1) = Me, (L)n = (THF)1.33 (5Pa); R(2) = Ph, R(1) = Me, (L)n = ([12]crown-4)2 (5Pc)]. Treatment of 1PH with either PhCH2Na or PhCH2K yields the heavier alkali metal complexes [{(Me3Si)2CH}P(C6H4-2-SMe)]M(THF)n [M = Na (1Pd), K (1Pe)]. With the exception of 2Pa and 2Pb, photolysis of these complexes with white light proceeds rapidly to give the thiolate species [R(2)P(R(1))(C6H4-2-S)]M(L)n [M = Li, L = THF (1Sa, 3Sa-5Sa); M = Li, L = tmeda (1Sb, 3Sb-5Sb); M = Na, L = THF (1Sd); M = K, L = THF (1Se)] as the sole products. The compounds 3Sa and 4Sa may be desolvated to give the cyclic oligomers [[{(Me3Si)2CH}P(Ph)(C6H4-2-S)]Li]6 ((3S)6) and [[tBuP(Me)(C6H4-2-S)]Li]8 ((4S)8), respectively. A mechanistic study reveals that the phosphanide-thiolate rearrangement proceeds by intramolecular nucleophilic attack of the phosphanide center at the carbon atom of the substituent at sulfur. For 2Pa/2Pb, competing intramolecular ß-deprotonation of the n-propyl substituent results in the elimination of propene and the formation of the phosphanide-thiolate dianion [{(Me3Si)2CH}P(C6H4-2-S)](2-).