Exploring the molecular mechanisms of rice blast resistance and advances in breeding for disease tolerance.

Rice blast, caused by the fungus Magnaporthe oryzae (syn. Pyricularia oryzae), is a major problem in rice cultivation and ranks among the most severe fungal diseases. Cloning and identifying resistance genes in rice, coupled with a comprehensive examination of the interaction between M. oryzae and rice, may provide insights into the mechanisms of rice disease resistance and facilitate the creation of new rice varieties with improved germplasm. These efforts are essential for protecting food security. This review examines the discovery of genes that confer resistance or susceptiblity to M. oryzae in rice over the last decade. It also discusses how knowledge of molecular mechanisms has been used in rice breeding and outlines key strategies for creating rice varieties resistant to this disease. The strategies discussed include gene pyramiding, molecular design breeding, editing susceptibility genes, and increasing expression of resistance genes through pathogen challenge. We address the prospects and challenges in breeding for rice blast resistance, emphasizing the need to fully exploit germplasm resources, employ cutting-edge methods to identify new resistance genes, and develop innovative breeding cultivars. Additionally, we underscore the importance of understanding the molecular basis of rice blast resistance and developing novel cultivars with broad-spectrum disease resistance.

Allelic variation in rice blast resistance: a pathway to sustainable disease management.

Rice blast is a major problem in agriculture, affecting rice production and threatening food security worldwide. This disease, caused by the fungus Magnaporthe oryzae, has led to a lot of research since the discovery of the first resistance gene, pib, in 1999. Researchers have now identified more than 50 resistance genes on eight of the twelve chromosomes in rice, each targeting different strains of the pathogen.These genes are spread out across seventeen different loci. These genes, which primarily code for nucleotide-binding and leucine-rich repeat proteins, play an important part in the defense of rice against the pathogen, either alone or in combination with other genes. An important characteristic of these genes is the allelic or paralogous interactions that exist within these loci. These relationships contribute to the gene's increased capacity for evolutionary adaptation. The ability of resistance proteins to recognize and react to novel effectors is improved by the frequent occurrence of variations within the domains that are responsible for recognizing pathogen effectors. The purpose of this review is to summarize the progress that has been made in identifying these essential genes and to investigate the possibility of utilizing the allelic variants obtained from these genes in future rice breeding efforts to increase resistance to rice blast.

A review of global wilderness area identification since the 21st century.

Wilderness areas are natural landscape elements that are relatively undisrupted by human activity and play a critical role in maintaining ecological equilibrium, preserving naturalness, and ensuring ecosystem resilience. Since 2000, monitoring of global wilderness areas has increased owing to the availability of spatial map data and remote sensing imagery related to human activity and/or human footprint. Progress has been made in the remote sensing of wilderness areas by relying on available historical literature (e.g., published papers, books, and reports). However, to our knowledge, a synthesis of wilderness area research from a remote sensing perspective has not yet been performed. In this preliminary review, we discuss the concept of wilderness in different historical eras and systematically summarize dynamic wilderness monitoring at local, national, and global scales, available remotely sensed indicators, disparities and commonalities in identification methods, and mapping uncertainties. Finally, since this field remains in its initial stage owing to a lack of unified standards and vertical/horizontal comparisons, we present insights into future research directions, particularly with regard to remote sensing. The findings of this review may help to improve the overall understanding of current wilderness patterns (i.e., increases/decreases) and the mechanisms by which they change, as well as provide guidance for global nature conservation programs.

Fine mapping and candidate gene analysis of qSB12YSB, a gene conferring major quantitative resistance to rice sheath blight.

KEY MESSAGE: qSB12YSB, a major quantitative sheath blight resistance gene originated from rice variety YSBR1 with good breeding potential, was mapped to a 289-Kb region on chromosome 12. Sheath blight (ShB), caused by Rhizoctonia solani kühn, is one of the most serious global rice diseases. Rice resistance to ShB is a typical of quantitative trait controlled by multiple quantitative trait loci (QTLs). Many QTLs for ShB resistance have been reported while only few of them were fine-mapped. In this study, we identified a QTL on chromosome 12, in which the qSB12YSB resistant allele shows significant ShB resistance, by using 150 BC4 backcross inbred lines employing the resistant rice variety YSBR1 as the donor and the susceptible variety Lemont (LE) as the recurrent parent. We further fine-mapped qSB12YSB to a 289-kb region by generating 34 chromosomal segment substitution lines and identified a total of 18 annotated genes as the most likely candidates for qSB12YSB after analyzing resequencing and transcriptomic data. KEGG analysis suggested that qSB12YSB might activate secondary metabolites biosynthesis and ROS scavenging system to improve ShB resistance. qSB12YSB conferred significantly stable resistance in three commercial rice cultivars (NJ9108, NJ5055 and NJ44) in field trials when introduced through marker assisted selection. Under severe ShB disease conditions, qSB12YSB significantly reduced yield losses by up to 13.5% in the LE background, indicating its great breeding potential. Our results will accelerate the isolation of qSB12YSB and its utilization in rice breeding programs against ShB.

Selective Passivation of Surface toward Bright Yellow Defective Emission of CdS Quantum Dots.

CdE (E = S, Se) quantum dots (QDs) with a broad and large Stokes shift PL emission have emerged as potential materials for white-light LEDs. However, this surface-related emission of nanocrystals is currently limited by low quantum efficiency. Herein, a convenient noninjected one-pot method at a relatively low temperature to prepare CdS QDs was readily achieved. The CdS-368 QD displays intense broad yellow emission in both solution and the solid state at room temperature. The coligation of organic and inorganic ligands passivates the electron trap states at the QD surface and suppresses nonradiative recombination, which is responsible for the high stability of colloids in organic solvents and the distinct fluorescence quantum yield.

Suppression of Rice Osa-miR444.2 Improves the Resistance to Sheath Blight in Rice Mediating through the Phytohormone Pathway.

MicroRNAs (miRNAs) are a class of conserved small RNA with a length of 21-24 nucleotides in eukaryotes, which are involved in development and defense responses against biotic and abiotic stresses. By RNA-seq, Osa-miR444b.2 was identified to be induced after Rhizoctonia solani (R. solani) infection. In order to clarify the function of Osa-miR444b.2 responding to R. solani infection in rice, transgenic lines over-expressing and knocking out Osa-miR444b.2 were generated in the background of susceptible cultivar Xu3 and resistant cultivar YSBR1, respectively. Over-expressing Osa-miR444b.2 resulted in compromised resistance to R. solani. In contrast, the knocking out Osa-miR444b.2 lines exhibited improved resistance to R. solani. Furthermore, knocking out Osa-miR444b.2 resulted in increased height, tillers, smaller panicle, and decreased 1000-grain weight and primary branches. However, the transgenic lines over-expressing Osa-miR444b.2 showed decreased primary branches and tillers, but increased panicle length. These results indicated that Osa-miR444b.2 was also involved in regulating the agronomic traits in rice. The RNA-seq assay revealed that Osa-miR444b.2 mainly regulated the resistance to rice sheath blight disease by affecting the expression of plant hormone signaling pathways-related genes such as ET and IAA, and transcription factors such as WRKYs and F-boxes. Together, our results suggest that Osa-miR444b.2 negatively mediated the resistance to R. solani in rice, which will contribute to the cultivation of sheath blight resistant varieties.

Identification of Elite R-Gene Combinations against Blast Disease in Geng Rice Varieties.

Rice blast, caused by the Magnaporthe oryzae fungus, is one of the most devastating rice diseases worldwide. Developing resistant varieties by pyramiding different blast resistance (R) genes is an effective approach to control the disease. However, due to complex interactions among R genes and crop genetic backgrounds, different R-gene combinations may have varying effects on resistance. Here, we report the identification of two core R-gene combinations that will benefit the improvement of Geng (Japonica) rice blast resistance. We first evaluated 68 Geng rice cultivars at seedling stage by challenging with 58 M. oryzae isolates. To evaluate panicle blast resistance, we inoculated 190 Geng rice cultivars at boosting stage with five groups of mixed conidial suspensions (MCSs), with each containing 5-6 isolates. More than 60% cultivars displayed moderate or lower levels of susceptibility to panicle blast against the five MCSs. Most cultivars contained two to six R genes detected by the functional markers corresponding to 18 known R genes. Through multinomial logistics regression analysis, we found that Pi-zt, Pita, Pi3/5/I, and Pikh loci contributed significantly to seedling blast resistance, and Pita, Pi3/5/i, Pia, and Pit contributed significantly to panicle blast resistance. For gene combinations, Pita+Pi3/5/i and Pita+Pia yielded more stable pyramiding effects on panicle blast resistance against all five MCSs and were designated as core R-gene combinations. Up to 51.6% Geng cultivars in the Jiangsu area contained Pita, but less than 30% harbored either Pia or Pi3/5/i, leading to less cultivars containing Pita+Pia (15.8%) or Pita+Pi3/5/i (5.8%). Only a few varieties simultaneously contained Pia and Pi3/5/i, implying the opportunity to use hybrid breeding procedures to efficiently generate varieties with either Pita+Pia or Pita+Pi3/5/i. This study provides valuable information for breeders to develop Geng rice cultivars with high resistance to blast, especially panicle blast.

Approaches to Reduce Rice Blast Disease Using Knowledge from Host Resistance and Pathogen Pathogenicity.

Rice is one of the staple foods for the majority of the global population that depends directly or indirectly on it. The yield of this important crop is constantly challenged by various biotic stresses. Rice blast, caused by Magnaporthe oryzae (M. oryzae), is a devastating rice disease causing severe yield losses annually and threatening rice production globally. The development of a resistant variety is one of the most effective and economical approaches to control rice blast. Researchers in the past few decades have witnessed the characterization of several qualitative resistance (R) and quantitative resistance (qR) genes to blast disease as well as several avirulence (Avr) genes from the pathogen. These provide great help for either breeders to develop a resistant variety or pathologists to monitor the dynamics of pathogenic isolates, and ultimately to control the disease. Here, we summarize the current status of the isolation of R, qR and Avr genes in the rice-M. oryzae interaction system, and review the progresses and problems of these genes utilized in practice for reducing rice blast disease. Research perspectives towards better managing blast disease by developing a broad-spectrum and durable blast resistance variety and new fungicides are also discussed.

Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.

Necrotrophic fungus Rhizoctonia solani Kühn (R. solani) causes serious diseases in many crops worldwide, including rice and maize sheath blight (ShB). Crop resistance to the fungus is a quantitative trait and resistance mechanism remains largely unknown, severely hindering the progress on developing resistant varieties. In this study, we found that resistant variety YSBR1 has apparently stronger ability to suppress the expansion of R. solani than susceptible Lemont in both field and growth chamber conditions. Comparison of transcriptomic profiles shows that the photosynthetic system including chlorophyll biosynthesis is highly suppressed by R. solani in Lemont but weakly in YSBR1. YSBR1 shows higher chlorophyll content than that of Lemont, and inducing chlorophyll degradation by dark treatment significantly reduces its resistance. Furthermore, three rice mutants and one maize mutant that carry impaired chlorophyll biosynthesis all display enhanced susceptibility to R. solani. Overexpression of OsNYC3, a chlorophyll degradation gene apparently induced expression by R. solani infection, significantly enhanced ShB susceptibility in a high-yield ShB-susceptible variety '9522'. However, silencing its transcription apparently improves ShB resistance without compromising agronomic traits or yield in field tests. Interestingly, altering chlorophyll content does not affect rice resistance to blight and blast diseases, caused by biotrophic and hemi-biotrophic pathogens, respectively. Our study reveals that chlorophyll plays an important role in ShB resistance and suppressing chlorophyll degradation induced by R. solani infection apparently improves rice ShB resistance. This discovery provides a novel target for developing resistant crop to necrotrophic fungus R. solani.

Active fires show an increasing elevation trend in the tropical highlands.

As an inherent element of the Earth's ecosystem, forest, and vegetation fires are one of the key contributors to and direct consequences of climate change. Given that topography is one of the key drivers of forest landscapes and fire behavior, it is important to clarify what the topographical characteristics and trends of global fire events are, particularly in the tropics. Here, we have investigated the variations in elevation of active fires at the continental to a global scale, including the tropics, the extra-tropics, the lowlands, and the highlands (greater than 200 m above sea level [asl]), using the available MODIS Collection 6 active fire products (2001-2019). The main conclusions are: (1) the annual totality (average of 4.5 million) of global active fire events decreased and over 97% of them occurred frequently below 1500 m asl. (2) The tropics and the highlands accounted for ~74% (±3%) and 71% (±2%) of global active fires, respectively, and 77% (±2%) were observed in the tropical highlands. (3) From the beginning of the 21st century, active fires in the highlands displayed an upward elevational trend, particularly in the tropics, while the opposite trend was observed for the lowlands. More importantly, the rate of the increasing elevation in the highlands had a greater magnitude than that of decreasing elevation in the lowlands. (4) Finally, the United Nations collaborative program on Reducing Emissions from Deforestation and Forest Degradation (UN-REDD) in Developing Countries seemed to slow down or even result in a reversal of the upward elevational trend of fire occurrences in the tropics for the partner countries, especially in the lowlands. In the context of global climate change and rampant fires, the trend of rising elevation for active fire occurrences, particularly in the tropical highlands, indicates that more vegetation burning events occur or will occur in hilly to mountainous areas, thus posing further threats to tropical forests and some important biodiversity refuges. More sustained efforts should be made by governments and the scientific community to instigate enhanced fire management practices and to conduct in-depth research programs.

Mesenchymal stem cells protect against TBI-induced pyroptosis in vivo and in vitro through TSG-6.

BACKGROUND: Pyroptosis, especially microglial pyroptosis, may play an important role in central nervous system pathologies, including traumatic brain injury (TBI). Transplantation of mesenchymal stem cells (MSCs), such as human umbilical cord MSCs (hUMSCs), has been a focus of brain injury treatment. Recently, MSCs have been found to play a role in many diseases by regulating the pyroptosis pathway. However, the effect of MSC transplantation on pyroptosis following TBI remains unknown. Tumor necrosis factor α stimulated gene 6/protein (TSG-6), a potent anti-inflammatory factor expressed in many cell types including MSCs, plays an anti-inflammatory role in many diseases; however, the effect of TSG-6 secreted by MSCs on pyroptosis remains unclear. METHODS: Mice were subjected to controlled cortical impact injury in vivo. To assess the time course of pyroptosis after TBI, brains of TBI mice were collected at different time points. To study the effect of TSG-6 secreted by hUMSCs in regulating pyroptosis, normal hUMSCs, sh-TSG-6 hUMSCs, or different concentrations of rmTSG-6 were injected intracerebroventricularly into mice 4 h after TBI. Neurological deficits, double immunofluorescence staining, presence of inflammatory factors, cell apoptosis, and pyroptosis were assessed. In vitro, we investigated the anti-pyroptosis effects of hUMSCs and TSG-6 in a lipopolysaccharide/ATP-induced BV2 microglial pyroptosis model. RESULTS: In TBI mice, the co-localization of Iba-1 (marking microglia/macrophages) with NLRP3/Caspase-1 p20/GSDMD was distinctly observed at 48 h. In vivo, hUMSC transplantation or treatment with rmTSG-6 in TBI mice significantly improved neurological deficits, reduced inflammatory cytokine expression, and inhibited both NLRP3/Caspase-1 p20/GSDMD expression and microglial pyroptosis in the cerebral cortices of TBI mice. However, the therapeutic effect of hUMSCs on TBI mice was reduced by the inhibition of TSG-6 expression in hUMSCs. In vitro, lipopolysaccharide/ATP-induced BV2 microglial pyroptosis was inhibited by co-culture with hUMSCs or with rmTSG-6. However, the inhibitory effect of hUMSCs on BV2 microglial pyroptosis was significantly reduced by TSG-6-shRNA transfection. CONCLUSION: In TBI mice, microglial pyroptosis was observed. Both in vivo and in vitro, hUMSCs inhibited pyroptosis, particularly microglial pyroptosis, by regulating the NLRP3/Caspase-1/GSDMD signaling pathway via TSG-6. Video Abstract.

Land-planning management based on multiple ecosystem services and simulation in tropical forests.

Forest losses can lead to severe damage to ecosystem services (ESs), especially in the tropics. Tropical forests are widespread in southwestern China, and they experience continual effects of human activities (e.g., rubber boom). However, forest simulations of land planning have not yet been systematically conducted. Based on a future land-use simulation model, here, the spatio-temporal characteristics of four ES (i.e., soil retention, water yield, carbon fixation, and habitat quality) were examined, and three scenarios (i.e., natural development, rubber development, and ecological protection) were designed and evaluated during 2000 for Xishuangbanna (XSBN), southwestern China. The results showed that: (1) from 2000 to 2020, the average values of the ESs declined by 449.1 t for soil retention, 13.4 mm for water yield, 0.1 for habitat quality, and 0.1 kg C/m2 for carbon fixation; (2) the four ESs, with the exception of water yield, had synergistic relationships, and trade-off appeared on the margins of these synergistic relationships; (3) compared with the scenarios of natural development and rubber development, the environmental protection scenario was found to have high efficiency for protecting nature reserves and reducing fragmentation; and (4) the intensity of land-use change will accelerate the decrease of ESs, and it is essential for nature reserves and areas of northern XSBN to improve their level of environmental protection. This work not only further enriches the ES research from the ecological environment and land-planning points of view, but it also provides different planning perspectives for ES and forest scenarios. This is useful in methodical approaches to forest sustainability.

The external dependence of ecological products: Spatial-temporal features and future predictions.

The instability of international trade can threaten the resource security of resource-importing countries, while international trade helps address spatial mismatches between regional populations, economies, and resources. Ecological products are the basis for human survival and development, in which agri-livestock products are especially sensitive to trade fluctuation and closely related to human well-being. The external dependence is an important indicator to reveal the external supply risk of regional resources. Scientific understanding the external dependence of ecological products can reveal the potential risks of trade fluctuations to human well-being and ecological sustainability. In this study, the global status and trend of countries' external dependence of agri-livestock ecological products are investigated. The results showed that nearly 80% (141) of countries relied on imports to meet ecological product demands in 2018, in which Asian-African-Latin countries accounted for about 78%, which indicated that the instability of international trade would threaten the ecological resource security in 80% of the world's countries, especially for underdeveloped countries. Even worse, 68% of countries are increasing their external dependence of ecological products. Even if the intensity of ecological resource exploitation reaches the maximum sustainable utilization level, 60% (113) of countries are expected to need imports for meeting their ecological product demands in 2050. Moreover, even considering the agricultural technological upgrade and the consumption transformation, more than 50% (94) of countries are still net importers of ecological products. Therefore, trade liberalization is still one of the important means to reduce resource security risks caused by trade instability. More notably, half of the countries in the world may sacrifice ecological sustainability to meet basic human well-being in the future under deglobalization.

Exploring adaptive approaches for social-ecological sustainability in the Belt and Road countries: From the perspective of ecological resource flow.

The countries along the Belt and Road (B&R) are characterized by fragile ecosystems and underdevelopment economy. International trade usually transferred the eco-environmental negative impacts to developing countries. How to avoid the conflict between economic development and eco-environmental protection is the primary concern of building the Green Silk Road. To discover the adaptive strategies for ensuring the sustainability of the social-ecosystem in countries along the B&R, this study analyzes the supply-consumption relationship of ecological resources by simulating the flow of net primary productivity between the ecosystem and the social system. The results show that: (1) The flow of ecological resources between agricultural and husbandry systems have effectively alleviated the local ecological pressure caused by animal husbandry in countries along the B&R. Animal husbandry in developed countries economize the local ecological resources by importing feed, while mitigating the grazing pressure by utilizing the local crop residues in underdeveloped agricultural countries. (2) International trade not only enables countries with insufficient ecological resources to meet their demands by importing ecological products and thus alleviate ecosystem pressure, but also promotes countries with sufficient ecological resources to transform their resource advantages into economic advantages by exporting without at the expense of ecological sustainability. (3) For underdeveloped countries, the dependence of economic development on ecological resources is at the expense of the living demands of residents, only if the economy could have leap-forward improvement the allocation of ecological resources within the social system would be inclined to living demands. These adaptive approaches not only provide the evidences of ecological-social sustainable development by promoting the reasonable flow and allocation of ecological resources, but also imply the necessary assistance for the underdeveloped countries to guarantee the basic human well-being in economic development.

Development of marker-free rice with stable and high resistance to rice black-streaked dwarf virus disease through RNA interference.

The rice black-streaked dwarf virus (RBSDV) disease causes severe rice yield losses in Asia. RNA interference (RNAi) has been widely applied to develop antiviral varieties in plants. So far, only a few studies reported the application of RNAi in rice against RBSDV and most of them are lack of enough data to support its breeding potential, which limited the progress on developing RBSDV-resistant variety. In this study, we generated three RNAi constructs to specifically target three RBSDV genes (S1, S2 and S6), respectively. We confirmed that RNAi targeting RBSDV S6 conferred rice with almost full immunity to RBSDV through phenotyping test in eight consecutive years in both artificial inoculation and field trials, while RNAi of S1 or S2 only leads to partially increased resistance. The S6RNAi was also found conferring strong resistance to southern rice black-streaked dwarf virus (SRBSDV), a novel species closely related to RBSDV that outbroke recently in Southern China. In particular, no adverse effects on agronomical and developmental traits were found in S6RNAi transgenic lines. The marker-free transgenic lines with S6RNAi, driven by either maize ubiquitin-1 promoter or rice rbcS green tissue expression promoter, in elite rice background should have great potential in breeding of resistant varieties to both RBSDV and SRBSDV and provide a basis for further safety evaluation and commercial application.

Occurrence frequencies and regional variations in Visible Infrared Imaging Radiometer Suite (VIIRS) global active fires.

Active fires are considered to be the key contributor to, and critical consequence of, climate change. Quantifying the occurrence frequency and regional variations in global active fires is significant for assessing carbon cycling, atmospheric chemistry, and postfire ecological effects. Multiscale variations in fire occurrence frequencies have still never been fully investigated despite free access to global active fire products. We analyzed the occurrence frequencies of Visible Infrared Imaging Radiometer Suite (VIIRS) active fires at national, pan-regional (tropics and extratropics) to global scales and at hourly, monthly, and annual scales during 2012-2017. The results revealed that the accumulated occurrence frequencies of VIIRS global active fires were up to 12,193 × 104 , yet exhibiting slight fluctuations annually and with respect to the 2014-2016 El Niño event, especially during 2015. About 35.52% of VIIRS active fires occurred from July to September, particularly in August (13.06%), and typically between 10:00 and 13:00 Greenwich Mean Time (GMT; 42.96%) and especially at 11:00 GMT (17.65%). The total counts conform to a bimodal pattern with peaks in 5°-11°N (18.01%) and 5°-18°S (32.46%), respectively, alongside a unimodal distribution in terms of longitudes between 15°E and 30°E (32.34%). Tropical annual average of active fire (1,496.81 × 104 ) accounted for 75.83%. Nearly 30% were counted in Brazil, the Democratic Republic of the Congo, Indonesia, and Mainland Southeast Asia (MSEA). Fires typically occurred between June (or August) and October (or November) with far below-average rainfall in these countries, while those in MSEA primarily occurred between February and April during the dry season. They were primarily observed between 00:00 and 02:00 GMT, between 12:00 and 14:00 within each Zone Time. We believed that VIIRS global active fires products are useful for developing fire detection algorithms, discriminating occurrence types and ignition causes via correlation analyses with physical geographic elements, and assessment of their potential impacts.

OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.

Spikelet is the primary reproductive structure and a critical determinant of grain yield in rice. The molecular mechanisms regulating rice spikelet development still remain largely unclear. Here, we report that mutations in OsPEX5, which encodes a peroxisomal targeting sequence 1 (PTS1) receptor protein, cause abnormal spikelet morphology. We show that OsPEX5 can physically interact with OsOPR7, an enzyme involved in jasmonic acid (JA) biosynthesis and is required for its import into peroxisome. Similar to Ospex5 mutant, the knockout mutant of OsOPR7 generated via CRISPR-Cas9 technology has reduced levels of endogenous JA and also displays an abnormal spikelet phenotype. Application of exogenous JA can partially rescue the abnormal spikelet phenotype of Ospex5 and Osopr7. Furthermore, we show that OsMYC2 directly binds to the promoters of OsMADS1, OsMADS7 and OsMADS14 to activate their expression, and subsequently regulate spikelet development. Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, therefore providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction.

FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.

KEY MESSAGE: FLO15encodes a plastidic glyoxalase I protein, OsGLYI7, which affects compound starch granule formation and starch synthesis in rice endosperm. Starch synthesis in rice (Oryza sativa) endosperm is a sophisticated process, and its underlying molecular machinery still remains to be elucidated. Here, we identified and characterized two allelic rice floury endosperm 15 (flo15) mutants, both with a white-core endosperm. The flo15 grains were characterized by defects in compound starch granule development, along with decreased starch content. Map-based cloning of the flo15 mutants identified mutations in OsGLYI7, which encodes a glyoxalase I (GLYI) involved in methylglyoxal (MG) detoxification. The mutations of FLO15/OsGLYI7 resulted in increased MG content in flo15 developing endosperms. FLO15/OsGLYI7 localizes to the plastids, and the in vitro GLYI activity derived from flo15 was significantly decreased relative to the wild type. Moreover, the expression of starch synthesis-related genes was obviously altered in the flo15 mutants. These findings suggest that FLO15 plays an important role in compound starch granule formation and starch synthesis in rice endosperm.

SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.

Grain size and leaf angle are two important traits determining grain yield in rice. However, the mechanisms regulating the two traits remain largely unknown. Here, we characterized a rice gain-of-function mutant, slender grain Dominant (slg-D), which exhibited longer and narrower grains and larger leaf angles, similar to plants with elevated brassinosteroid (BR) levels or strengthened BR signaling. The increased cell length is responsible for the mutant phenotypes in slg-D We demonstrated that the phenotype of slg-D is caused by enhanced expression of SLG, a BAHD acyltransferase-like protein gene. SLG is preferentially expressed in young panicles and lamina joints, implying its role in controlling cell growth in those two tissues. slg-D was restored to wild type by treatment with brassinazole, an inhibitor of BR biosynthesis. Overexpression of SLG in d11-2 (deficient in BR synthesis) and d61-1 (deficient in BR signaling) did not change the existing phenotypes. The slg-D plants had elevated BR contents and, accordingly, expression of BR-related genes was changed in a manner similar to BR treatment. Moreover, SLG RNAi plants displayed mild BR-deficient phenotypes including shorter grains, smaller leaf angles, and compact semi-dwarf plant types. The in vitro biochemical assays and transgenic approaches collectively demonstrated that SLG functions as homomers. Taken together, we conclude that SLG is an important regulator in BR homeostasis and that manipulation of SLG expression to an optimal level may provide a way to develop an ideal plant type.

FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.

In cereal crops, starch synthesis and storage depend mainly on a specialized class of plastids, termed amyloplasts. Despite the importance of starch, the molecular machinery regulating starch synthesis and amyloplast development remains largely unknown. Here, we report the characterization of the rice (Oryza sativa) floury endosperm7 (flo7) mutant, which develops a floury-white endosperm only in the periphery and not in the inner portion. Consistent with the phenotypic alternation in flo7 endosperm, the flo7 mutant had reduced amylose content and seriously disrupted amylopectin structure only in the peripheral endosperm. Notably, flo7 peripheral endosperm cells showed obvious defects in compound starch grain development. Map-based cloning of FLO7 revealed that it encodes a protein of unknown function. FLO7 harbors an N-terminal transit peptide capable of targeting functional FLO7 fused to green fluorescent protein to amyloplast stroma in developing endosperm cells, and a domain of unknown function 1338 (DUF1338) that is highly conserved in green plants. Furthermore, our combined ß-glucuronidase activity and RNA in situ hybridization assays showed that the FLO7 gene was expressed ubiquitously but exhibited a specific expression in the endosperm periphery. Moreover, a set of in vivo experiments demonstrated that the missing 32 aa in the flo7 mutant protein are essential for the stable accumulation of FLO7 in the endosperm. Together, our findings identify FLO7 as a unique plant regulator required for starch synthesis and amyloplast development within the peripheral endosperm and provide new insights into the spatial regulation of endosperm development in rice.