Detalhe da pesquisa
1.
Genome scale metabolic network modelling for metabolic profile predictions.
PLoS Comput Biol
; 20(2): e1011381, 2024 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-38386685
2.
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
PLoS Comput Biol
; 20(3): e1011814, 2024 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-38527092
3.
APEX: an Annotation Propagation Workflow through Multiple Experimental Networks to Improve the Annotation of New Metabolite Classes in Caenorhabditis elegans.
Anal Chem
; 95(48): 17550-17558, 2023 12 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37984857
4.
FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
Bioinformatics
; 37(21): 3896-3904, 2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34478489
5.
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis.
PLoS Comput Biol
; 17(9): e1009105, 2021 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-34492007
6.
Atopic dermatitis or eczema? Consequences of ambiguity in disease name for biomedical literature mining.
Clin Exp Allergy
; 51(9): 1185-1194, 2021 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-34213816
7.
MetaboRank: network-based recommendation system to interpret and enrich metabolomics results.
Bioinformatics
; 35(2): 274-283, 2019 01 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-29982278
8.
MetExplore: collaborative edition and exploration of metabolic networks.
Nucleic Acids Res
; 46(W1): W495-W502, 2018 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-29718355
9.
Large-Scale Modeling Approach Reveals Functional Metabolic Shifts during Hepatic Differentiation.
J Proteome Res
; 18(1): 204-216, 2019 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-30394098
10.
Computational methods to identify metabolic sub-networks based on metabolomic profiles.
Brief Bioinform
; 18(1): 43-56, 2017 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-26822099
11.
MetExploreViz: web component for interactive metabolic network visualization.
Bioinformatics
; 34(2): 312-313, 2018 Jan 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28968733
12.
Machine learning to identify pairwise interactions between specific IgE antibodies and their association with asthma: A cross-sectional analysis within a population-based birth cohort.
PLoS Med
; 15(11): e1002691, 2018 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30422985
13.
Targeted versus untargeted omics - the CAFSA story.
J Inherit Metab Dis
; 41(3): 447-456, 2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29423831
14.
Integrated transcriptomics and metabolomics reveal signatures of lipid metabolism dysregulation in HepaRG liver cells exposed to PCB 126.
Arch Toxicol
; 92(8): 2533-2547, 2018 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-29947894
15.
Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics.
Environ Sci Technol
; 56(20): 14219-14222, 2022 10 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-36162120
16.
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
bioRxiv
; 2024 Jan 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-38260498
17.
Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors.
Gigascience
; 122022 12 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-37712592
18.
Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation.
Front Mol Biosci
; 9: 841373, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-35350714
19.
Classification of Pediatric Asthma: From Phenotype Discovery to Clinical Practice.
Front Pediatr
; 6: 258, 2018.
Artigo
em Inglês
| MEDLINE | ID: mdl-30298124
20.
Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas.
Metabolites
; 8(3)2018 Sep 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30223552