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1.
Environ Toxicol Chem ; 28(1): 61-4, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18717621

RESUMO

Cultures of Mycobacterium vanbaalenii strain PYR-1 in a liquid medium were exposed to the toxic environmental contaminant acridine (260 microM). After incubation for 7 d, the cultures were extracted with ethyl acetate. Metabolites were purified using high-performance liquid chromatography and analyzed by mass spectrometry and 1H nuclear magnetic resonance spectroscopy. Four metabolites, 9,10-dihydroacridine, 4-hydroxyacridine, acridine cis-1 ,2-dihydrodiol, and acridin-9(10H)-one, were identified.


Assuntos
Acridinas/farmacocinética , Mycobacterium/metabolismo , Biotransformação , Cromatografia Líquida de Alta Pressão , Espectrometria de Massas por Ionização por Electrospray , Espectrofotometria Ultravioleta
2.
Chemosphere ; 67(2): 240-3, 2007 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17123578

RESUMO

The metabolism of the antibacterial fluoroquinolone drug flumequine by Cunninghamella elegans was investigated using cultures grown in Sabouraud dextrose broth with 308microM flumequine. The cultures were extracted with ethyl acetate; metabolites were separated by high-performance liquid chromatography and identified by mass spectrometry and proton nuclear magnetic resonance spectroscopy. Flumequine was transformed to two diastereomers of 7-hydroxyflumequine (23 and 43% of the total chromatographic peak area at 280nm) and 7-oxoflumequine (11% of the total peak area). This is the first time that the two 7-hydroxy diastereomers have been characterized structurally; the hydroxyflumequines are known to have less antimicrobial activity than flumequine.


Assuntos
Cunninghamella/metabolismo , Fluoroquinolonas/metabolismo , Biotransformação , Microbiologia do Solo
3.
J Agric Food Chem ; 54(8): 3157-62, 2006 Apr 19.
Artigo em Inglês | MEDLINE | ID: mdl-16608246

RESUMO

Kava (Piper methysticum), a perennial shrub native to the South Pacific islands, has been used to relieve anxiety. Recently, several cases of severe hepatotoxicity have been reported from the consumption of dietary supplements containing kava. It is unclear whether the kava constituents, kavalactones, are responsible for the associated hepatotoxicity. To investigate the key components responsible for the liver toxicity, bioassay-guided fractionation was carried out in this study. Kava roots, leaves, and stem peelings were extracted with methanol, and the resulting residues were subjected to partition with a different polarity of solvents (hexane, ethyl acetate, n-butanol, and water) for evaluation of their cytotoxicity on HepG2 cells based on the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay and lactate dehydrogenase and aspartate aminotransferase enzyme leakage assays. Organic solvent fractions displayed a much stronger cytotoxicity than water fractions for all parts of kava. The hexane fraction of the root exhibited stronger cytotoxic effects than fractions of root extracted with other solvents or extracts from the other parts of kava. Further investigations using bioassay-directed isolation and analysis of the hexane fraction indicated that the compound responsible for the cytotoxicity was flavokavain B. The identity of the compound was confirmed by (1)H and (13) C NMR and MS techniques.


Assuntos
Doença Hepática Induzida por Substâncias e Drogas , Kava/química , Kava/toxicidade , Extratos Vegetais/toxicidade , Aspartato Aminotransferases/metabolismo , Linhagem Celular , Flavonoides/toxicidade , L-Lactato Desidrogenase/metabolismo , Metanol , Folhas de Planta/química , Raízes de Plantas/química , Caules de Planta/química , Solventes
4.
Chemosphere ; 64(9): 1499-506, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16504243

RESUMO

The metabolism of phenanthrene and the mammalian corticosteroid hormone cortexolone by the fungus Cunninghamella elegans was studied. The amounts of the cortexolone transformation products, cortisol and epicortisol, were affected by the presence of phenanthrene. Approximately 40% more cortisol was produced by C. elegans in cultures with phenanthrene. In contrast, epicortisol formation decreased. C. elegans transformed phenanthrene to phenanthrene trans-1,2-,3,4-, and 9,10-dihydrodiols, phenols, diphenols (diols) and glucoside conjugates of 1-, 2-, 3-, 4-, and 9-phenanthrols. Almost all of the phenanthrene initially added was metabolized to ethyl acetate extractable metabolites. In the mycelia and culture medium extracts, phenanthrol glucosides represented 80% and 94% of the total metabolites, respectively. The major metabolite was the glucoside conjugate of 1-phenanthrol. The presence of cortexolone affected the biodegradation of phenanthrene by decreasing the amounts of phenanthrene metabolites compared to control cultures.


Assuntos
Cortodoxona/farmacologia , Cunninghamella/metabolismo , Poluentes Ambientais/farmacocinética , Fenantrenos/farmacocinética , Biodegradação Ambiental , Biotransformação , Cortodoxona/farmacocinética , Cunninghamella/efeitos dos fármacos , Cunninghamella/crescimento & desenvolvimento , Poluentes Ambientais/análise , Cromatografia Gasosa-Espectrometria de Massas , Fenantrenos/análise , Espectrometria de Massas por Ionização por Electrospray
5.
J Agric Food Chem ; 53(8): 3248-58, 2005 Apr 20.
Artigo em Inglês | MEDLINE | ID: mdl-15826085

RESUMO

A tandem solid-phase extraction method was used to isolate carcinogenic heterocyclic aromatic amines (HAAs) from cooked meats. The following 10 HAAs were identified by HPLC/ESI-MS/MS: 2-amino-9H-pyrido[2,3-b]indole (2-AalphaC), 2-amino-3-methyl-9H-pyrido[2,3-b]indole (MeAalphaC), 2-amino-3-methylimidazo[4,5-f]quinoline (IQ), 2-amino-3-methylimidazo[4,5-f]quinoxaline (IQx), 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (8-MeIQx), 2-amino-3,4,8-trimethylimidazo[4,5-f]quinoxaline (4,8-DiMeIQx), 2-amino-3,7,8-trimethylimidazo[4,5-f]quinoxaline (7,8-DiMeIQx), 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), 2-amino-1,7,9-trimethylimidazo[4,5-g]quinoxaline (7,9-DiMeIgQx), and 2-amino-1-methylimidazo[4,5-b]quinoline (IQ[4,5-b]); the latter HAA has not previously been reported in cooked meats. The concentrations of these HAAs ranged from <0.03 to 15 ppb in cooked meats and poultry, to 75 ppb in cooked beef extract, and to 85 ppb in grill scrapings. The product ion scan mode was used to confirm the identities of these HAAs. Six other compounds were detected that appear to contain the N-methylimidazoquinoxaline skeleton on the basis of their product ion spectra, and these compounds are probable isomers of IQx, 8-MeIQx, and DiMeIQx. A number of known HAAs and novel HAAs of unknown genotoxic potential are formed at appreciable levels in cooked meats.


Assuntos
Aminas/análise , Carcinógenos/análise , Compostos Heterocíclicos/análise , Temperatura Alta , Carne/análise , Animais , Bovinos , Galinhas , Cromatografia Líquida de Alta Pressão , Reprodutibilidade dos Testes , Espectrometria de Massas por Ionização por Electrospray
7.
FEMS Microbiol Lett ; 214(1): 133-6, 2002 Aug 27.
Artigo em Inglês | MEDLINE | ID: mdl-12204384

RESUMO

The ability of the fungus Beauveria bassiana ATCC 7159 to transform the antibacterial agent cinoxacin was investigated. Cultures in sucrose-peptone broth were dosed with cinoxacin, grown for 20 days, and then extracted with ethyl acetate. Two metabolites were detected and purified by high-performance liquid chromatography. The major metabolite was identified by mass and proton nuclear magnetic resonance spectra as 1-ethyl-1,4-dihydro-3-(hydroxymethyl)[1,3]dioxolo[4,5-g]cinnolin-4-one and the minor metabolite was identified as 1-ethyl-1,4-dihydro-6,7-dihydroxy-3-(hydroxymethyl)cinnolin-4-one. B. bassiana also reduced quinoline-3-carboxylic acid to 3-(hydroxymethyl)quinoline.


Assuntos
Anti-Infecciosos/metabolismo , Ascomicetos/metabolismo , Cinoxacino/metabolismo , 4-Quinolonas , Ascomicetos/crescimento & desenvolvimento , Biodegradação Ambiental , Cromatografia Líquida de Alta Pressão , Espectroscopia de Ressonância Magnética
8.
J Agric Food Chem ; 52(20): 6156-64, 2004 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-15453681

RESUMO

Several bioactive botanicals including St. John's wort (SJW; Hypericum perforatum L.) have been used to formulate functional foods and beverages. This study aimed to investigate the stability of SJW components in aqueous solutions and fruit-flavored drinks. Changes of active marker components (hypericin, pseudohypericin, hyperforin, and adhyperforin) as affected by pH and light exposure were determined by HPLC, and the degradation of hyperforin was analyzed by LC-MS/MS and NMR. SJW components were found to be unstable in acidic aqueous solutions. More changes occurred under light exposure, with hyperforin and adhyperforin decreasing the most. Less severe changes were observed in the drink sample as compared to the pH 2.65 solution. Major degradation products of hyperforin in acidic aqueous solutions were identified as furohyperforin, furohyperforin hydroperoxide, and furohyperforin isomer a. The latter was also found in the drink product containing SJW as an ingredient. Biological activities and potential quality and safety implications of these chemical changes are yet to be evaluated.


Assuntos
Bebidas/análise , Compostos Bicíclicos com Pontes/química , Hypericum/química , Floroglucinol/análogos & derivados , Floroglucinol/química , Terpenos/química , Estabilidade de Medicamentos , Concentração de Íons de Hidrogênio , Estrutura Molecular , Soluções , Água
9.
Mycologia ; 94(1): 1-5, 2002.
Artigo em Inglês | MEDLINE | ID: mdl-21156472

RESUMO

The formation of conjugates from two antibacterial fluoroquinolone drugs, ciprofloxacin and norfloxacin, was observed in cultures of Trichoderma viride that had been grown in sucrose-peptone broth and extracted 16 d after dosing with the drugs. Both conjugates were purified by high-performance liquid chromatography and found to be optically active. They were identified by mass and proton nuclear magnetic resonance spectra as 4-hydroxy-3-oxo-4-vinylcyclopent-1-enyl ciprofloxacin and 4-hydroxy-3-oxo-4-vinylcyclopent-1-enyl norfloxacin. The transformation of veterinary fluoroquinolones in the presence of fungi may have ecological significance.

10.
J Biosci Bioeng ; 111(3): 333-5, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21169055

RESUMO

Cultures of Aspergillus niger NRRL-599 in fluid Sabouraud medium were grown with quinazoline and phthalazine for 7 days. Metabolites were purified by high-performance liquid chromatography and identified by mass spectrometry and proton nuclear magnetic resonance spectroscopy. Quinazoline was oxidized to 4-quinazolinone and 2,4-quinazolinedione, and phthalazine was oxidized to 1-phthalazinone.


Assuntos
Aspergillus niger/metabolismo , Ftalazinas/metabolismo , Quinazolinas/metabolismo , Biotransformação , Cromatografia Líquida de Alta Pressão , Meios de Cultura , Espectroscopia de Ressonância Magnética , Espectrometria de Massas , Estrutura Molecular
11.
mBio ; 1(2)2010 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-20714442

RESUMO

The Rieske nonheme iron aromatic ring-hydroxylating oxygenases (RHOs) NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1 have been implicated in the initial oxidation of high-molecular-weight (HMW) polycyclic aromatic hydrocarbons (PAHs), forming cis-dihydrodiols. To clarify how these two RHOs are functionally different with respect to the degradation of HMW PAHs, we investigated their substrate specificities to 13 representative aromatic substrates (toluene, m-xylene, phthalate, biphenyl, naphthalene, phenanthrene, anthracene, fluoranthene, pyrene, benz[a]anthracene, benzo[a]pyrene, carbazole, and dibenzothiophene) by enzyme reconstitution studies of Escherichia coli. Both Nid systems were identified to be compatible with type V electron transport chain (ETC) components, consisting of a [3Fe-4S]-type ferredoxin and a glutathione reductase (GR)-type reductase. Metabolite profiles indicated that the Nid systems oxidize a wide range of aromatic hydrocarbon compounds, producing various isomeric dihydrodiol and phenolic compounds. NidAB and NidA3B3 showed the highest conversion rates for pyrene and fluoranthene, respectively, with high product regiospecificity, whereas other aromatic substrates were converted at relatively low regiospecificity. Structural characteristics of the active sites of the Nid systems were investigated and compared to those of other RHOs. The NidAB and NidA3B3 systems showed the largest substrate-binding pockets in the active sites, which satisfies spatial requirements for accepting HMW PAHs. Spatially conserved aromatic amino acids, Phe-Phe-Phe, in the substrate-binding pockets of the Nid systems appeared to play an important role in keeping aromatic substrates within the reactive distance from the iron atom, which allows each oxygen to attack the neighboring carbons.


Assuntos
Proteínas de Bactérias/química , Mycobacterium/enzimologia , Oxigenases/química , Hidrocarbonetos Policíclicos Aromáticos/química , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Hidroxilação , Ferro/metabolismo , Dados de Sequência Molecular , Estrutura Molecular , Mycobacterium/química , Mycobacterium/classificação , Mycobacterium/genética , Oxigenases/genética , Oxigenases/metabolismo , Filogenia , Hidrocarbonetos Policíclicos Aromáticos/metabolismo , Especificidade por Substrato
12.
Can J Microbiol ; 53(1): 144-7, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17496960

RESUMO

To determine the ability of environmental bacteria to metabolize the frequently prescribed fluoroquinolone drug ciprofloxacin, eight Mycobacterium spp. cultures were grown for 4 days in a medium containing sorbitol and yeast extract with 100 mg x L(-1) ciprofloxacin. After the cultures had been centrifuged and the supernatants extracted with ethyl acetate, two metabolites were purified by using high-performance liquid chromatography. They were identified with liquid chromatography/electrospray ionization mass spectrometry and proton nuclear magnetic resonance spectroscopy. Ciprofloxacin was transformed to both N-acetylciprofloxacin (2.5%-5.5% of the total peak area at 280 nm) and N-nitrosociprofloxacin (6.0%-8.0% of the peak area) by Mycobacterium gilvum PYR-GCK and Mycobacterium sp. PYR100 but it was transformed only to N-acetylciprofloxacin by Mycobacterium frederiksbergense FAn9, M. gilvum ATCC 43909, M. gilvum BB1, Mycobacterium smegmatis mc2155, Mycobacterium sp. 7E1B1W, and Mycobacterium sp. RJGII-135. The results suggest that biotransformation may serve as a ciprofloxacin resistance mechanism for these bacteria.


Assuntos
Anti-Infecciosos/metabolismo , Ciprofloxacina/metabolismo , Fluoroquinolonas/metabolismo , Micobactérias não Tuberculosas/efeitos dos fármacos , Acetilação , Cromatografia Líquida de Alta Pressão , Farmacorresistência Bacteriana/fisiologia , Espectroscopia de Ressonância Magnética , Nitrosação , Micobactérias não Tuberculosas/metabolismo
13.
J Bacteriol ; 189(2): 464-72, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17085566

RESUMO

Mycobacterium vanbaalenii PYR-1 was the first bacterium isolated by virtue of its ability to metabolize the high-molecular-weight polycyclic aromatic hydrocarbon (PAH) pyrene. We used metabolic, genomic, and proteomic approaches in this investigation to construct a complete and integrated pyrene degradation pathway for M. vanbaalenii PYR-1. Genome sequence analyses identified genes involved in the pyrene degradation pathway that we have proposed for this bacterium. To identify proteins involved in the degradation, we conducted a proteome analysis of cells exposed to pyrene using one-dimensional gel electrophoresis in combination with liquid chromatography-tandem mass spectrometry. Database searching performed with the M. vanbaalenii PYR-1 genome resulted in identification of 1,028 proteins with a protein false discovery rate of <1%. Based on both genomic and proteomic data, we identified 27 enzymes necessary for constructing a complete pathway for pyrene degradation. Our analyses indicate that this bacterium degrades pyrene to central intermediates through o-phthalate and the beta-ketoadipate pathway. Proteomic analysis also revealed that 18 enzymes in the pathway were upregulated more than twofold, as indicated by peptide counting when the organism was grown with pyrene; three copies of the terminal subunits of ring-hydroxylating oxygenase (NidAB2, MvanDraft_0817/0818, and PhtAaAb), dihydrodiol dehydrogenase (MvanDraft_0815), and ring cleavage dioxygenase (MvanDraft_3242) were detected only in pyrene-grown cells. The results presented here provide a comprehensive picture of pyrene metabolism in M. vanbaalenii PYR-1 and a useful framework for understanding cellular processes involved in PAH degradation.


Assuntos
Mycobacterium/metabolismo , Pirenos/metabolismo , Biologia de Sistemas/métodos , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Ordem dos Genes , Genes Bacterianos/genética , Genômica/métodos , Redes e Vias Metabólicas , Estrutura Molecular , Família Multigênica , Mycobacterium/genética , Proteômica/métodos , Pirenos/química
14.
J Bacteriol ; 189(13): 4635-47, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17449607

RESUMO

Mycobacterium vanbaalenii PYR-1 is capable of degrading a wide range of high-molecular-weight polycyclic aromatic hydrocarbons (PAHs), including fluoranthene. We used a combination of metabolomic, genomic, and proteomic technologies to investigate fluoranthene degradation in this strain. Thirty-seven fluoranthene metabolites including potential isomers were isolated from the culture medium and analyzed by high-performance liquid chromatography, gas chromatography-mass spectrometry, and UV-visible absorption. Total proteins were separated by one-dimensional gel and analyzed by liquid chromatography-tandem mass spectrometry in conjunction with the M. vanbaalenii PYR-1 genome sequence (http://jgi.doe.gov), which resulted in the identification of 1,122 proteins. Among them, 53 enzymes were determined to be likely involved in fluoranthene degradation. We integrated the metabolic information with the genomic and proteomic results and proposed pathways for the degradation of fluoranthene. According to our hypothesis, the oxidation of fluoranthene is initiated by dioxygenation at the C-1,2, C-2,3, and C-7,8 positions. The C-1,2 and C-2,3 dioxygenation routes degrade fluoranthene via fluorene-type metabolites, whereas the C-7,8 routes oxidize fluoranthene via acenaphthylene-type metabolites. The major site of dioxygenation is the C-2,3 dioxygenation route, which consists of 18 enzymatic steps via 9-fluorenone-1-carboxylic acid and phthalate with the initial ring-hydroxylating oxygenase, NidA3B3, oxidizing fluoranthene to fluoranthene cis-2,3-dihydrodiol. Nonspecific monooxygenation of fluoranthene with subsequent O methylation of dihydroxyfluoranthene also occurs as a detoxification reaction.


Assuntos
Fluorenos/metabolismo , Mycobacterium/genética , Mycobacterium/metabolismo , Acetilcoenzima A/metabolismo , Acil Coenzima A/metabolismo , Proteínas de Bactérias/análise , Proteínas de Bactérias/metabolismo , Biodegradação Ambiental , Cromatografia Líquida de Alta Pressão , Fluorenos/química , Cromatografia Gasosa-Espectrometria de Massas , Regulação Bacteriana da Expressão Gênica , Ordem dos Genes , Genômica/métodos , Redes e Vias Metabólicas , Modelos Biológicos , Estrutura Molecular , Proteoma/análise , Proteoma/metabolismo , Proteômica/métodos , Espectrofotometria Ultravioleta
15.
Appl Environ Microbiol ; 72(9): 5790-3, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16957195

RESUMO

Because fluoroquinolone antimicrobial agents may be released into the environment, the potential for environmental bacteria to biotransform these drugs was investigated. Eight Mycobacterium sp. cultures in a sorbitol-yeast extract medium were dosed with 100 microg ml(-1) of norfloxacin and incubated for 7 days. The MICs of norfloxacin for these strains, tested by an agar dilution method, were 1.6 to 25 microg ml(-1). Cultures were extracted with ethyl acetate, and potential metabolites in the extracts were purified by high-performance liquid chromatography. The metabolites were identified using mass spectrometry and nuclear magnetic resonance spectroscopy. N-Acetylnorfloxacin (5 to 50% of the total absorbance at 280 nm) was produced by the eight Mycobacterium strains. N-Nitrosonorfloxacin (5 to 30% of the total absorbance) was also produced by Mycobacterium sp. strain PYR100 and Mycobacterium gilvum PYR-GCK. The MICs of N-nitrosonorfloxacin and N-acetylnorfloxacin were 2- to 38- and 4- to 1,000-fold higher, respectively, than those of norfloxacin for several different bacteria, including the two strains that produced both metabolites. Although N-nitrosonorfloxacin had less antibacterial activity, nitrosamines are potentially carcinogenic. The biotransformation of fluoroquinolones by mycobacteria may serve as a resistance mechanism.


Assuntos
Antibacterianos/metabolismo , Mycobacterium/metabolismo , Norfloxacino/metabolismo , Antibacterianos/química , Antibacterianos/farmacologia , Biotransformação , Cromatografia Líquida de Alta Pressão , Microbiologia Ambiental , Poluentes Ambientais/metabolismo , Espectroscopia de Ressonância Magnética , Mycobacterium/efeitos dos fármacos , Mycobacterium/isolamento & purificação , Norfloxacino/química , Norfloxacino/farmacologia , Espectrometria de Massas por Ionização por Electrospray
16.
Appl Microbiol Biotechnol ; 71(4): 522-32, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16317545

RESUMO

Mycobacterium vanbaalenii PYR-1 has the ability to degrade low- and high-molecular-weight polycyclic aromatic hydrocarbons (PAHs). In addition to dioxygenases, cytochrome P450 monooxygenases have been implicated in PAH degradation. Three cytochrome P450 genes, cyp151 (pipA), cyp150, and cyp51, were detected and amplified by polymerase chain reaction from M. vanbaalenii PYR-1. The complete sequence of these genes was determined. The translated putative proteins were > or = 80% identical to other GenBank-listed mycobacterial CYP151, CYP150, and CYP51. Genes pipA and cyp150 were cloned, and the proteins partially expressed in Escherichia coli as soluble heme-containing cytochrome P450s that exhibited a characteristic peak at 450 nm in reduced carbon monoxide difference spectra. Monooxygenation metabolites of pyrene, dibenzothiophene, and 7-methylbenz[alpha]anthracene were detected in whole cell biotransformations, with E. coli expressing pipA or cyp150 when analyzed by gas chromatography/mass spectrometry. The cytochrome P450 inhibitor metyrapone strongly inhibited the S-oxidation of dibenzothiophene. Thirteen other Mycobacterium strains were screened for the presence of pipA, cyp150, and cyp51 genes, as well as the initial PAH dioxygenase (nidA and nidB). The results indicated that many of the Mycobacterium spp. surveyed contain both monooxygenases and dioxygenases to degrade PAHs. Our results provide further evidence for the diverse enzymatic capability of Mycobacterium spp. to metabolize polycyclic aromatic hydrocarbons.


Assuntos
Sistema Enzimático do Citocromo P-450/genética , Mycobacterium/enzimologia , Mycobacterium/genética , Hidrocarbonetos Policíclicos Aromáticos/metabolismo , Proteínas Recombinantes/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Southern Blotting , Clonagem Molecular , Sistema Enzimático do Citocromo P-450/metabolismo , DNA Bacteriano/genética , Cromatografia Gasosa-Espectrometria de Massas , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase , Proteínas Recombinantes/química , Alinhamento de Sequência , Análise de Sequência de DNA , Espectrofotometria Ultravioleta
17.
Appl Environ Microbiol ; 72(2): 1045-54, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16461648

RESUMO

Mycobacterium vanbaalenii PYR-1 is able to metabolize a wide range of low- and high-molecular-weight (HMW) polycyclic aromatic hydrocarbons (PAHs). A 20-kDa protein was upregulated in PAH-metabolizing M. vanbaalenii PYR-1 cells compared to control cultures. The differentially expressed protein was identified as a beta subunit of the terminal dioxygenase using mass spectrometry. PCR with degenerate primers designed based on de novo sequenced peptides and a series of plaque hybridizations were done to screen the M. vanbaalenii PYR-1 genomic library. The genes, designated nidA3B3, encoding the alpha and beta subunits of terminal dioxygenase, were subsequently cloned and sequenced. The deduced enzyme revealed close similarities to the corresponding PAH ring-hydroxylating dioxygenases from Mycobacterium and Rhodococcus spp. but had the highest similarity, 61.9%, to the alpha subunit from Nocardioides sp. strain KP7. The alpha subunit also showed 52% sequence homology with the previously reported NidA from M. vanbaalenii PYR-1. The genes nidA3B3 were subcloned into the expression vector pET-17b, and the enzyme activity in Escherichia coli cells was reconstituted through coexpression with the ferredoxin (PhdC) and ferredoxin reductase (PhdD) genes of the phenanthrene dioxygenase from Nocardioides sp. strain KP7. The recombinant PAH dioxygenase appeared to favor the HMW PAH substrates fluoranthene, pyrene, and phenanthrene. Several other PAHs, including naphthalene, anthracene, and benz[a]anthracene, were also converted to their corresponding cis-dihydrodiols. The recombinant E. coli, however, did not show any dioxygenation activity for phthalate and biphenyl. The upregulation of nidA3B3 in M. vanbaalenii PYR-1 induced by PAHs was confirmed by reverse transcription-PCR analysis.


Assuntos
Dioxigenases/genética , Dioxigenases/metabolismo , Genes Bacterianos , Mycobacterium/genética , Mycobacterium/metabolismo , Hidrocarbonetos Policíclicos Aromáticos/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Biodegradação Ambiental , Clonagem Molecular , DNA Bacteriano/genética , Cromatografia Gasosa-Espectrometria de Massas , Expressão Gênica , Dados de Sequência Molecular , Peso Molecular , Mycobacterium/isolamento & purificação , Filogenia , Hidrocarbonetos Policíclicos Aromáticos/química , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Microbiologia do Solo , Espectrometria de Massas por Ionização por Electrospray
18.
Biodegradation ; 16(6): 513-26, 2005 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-15865344

RESUMO

Cultures of Mycobacterium vanbaalenii strain PYR-1 grown in mineral salts medium and nutrients in the presence of benz[a]anthracene metabolized 15% of the added benz[a]anthracene after 12 days of incubation. Neutral and acidic ethyl acetate extractable metabolites were isolated and characterized by high performance liquid chromatography (HPLC) and uv-visible absorption, gas chromatography/mass (GC/MS) and nuclear magnetic resonance (NMR) spectral analysis. Trimethylsilylation of the metabolites followed by GC/MS analysis facilitated identification of metabolites. The characterization of metabolites indicated that M. vanbaalenii initiated attack of benz[a]anthracene at the C-1,2-, C-5,6-, C-7,12- and C-10,11-positions to form dihydroxylated and methoxylated intermediates. The major site of enzymatic attack was in the C-10, C-11 positions. Subsequent ortho- and meta-cleavage of each of the aromatic rings led to the accumulation of novel ring-fission metabolites in the medium. The major metabolites identified were 3-hydrobenzo[f]isobenzofuran-1-one (3.2%), 6-hydrofuran[3,4-g]chromene-2,8-dione (1.3%), benzo[g]chromene-2-one (1.7%), naphtho[2,1-g]chromen-10-one (48.1%), 10-hydroxy-11-methoxybenz[a]anthracene (9.3%), and 10,11-dimethoxybenz[a]anthracene (36.4%). Enzymatic attack at the C-7 and C-12 positions resulted in the formation of benz[a]anthracene-7,12-dione, 1-(2-hydroxybenzoyl)-2-naphthoic acid, and 1-benzoyl-2-naphthoic acid. A phenyl-naphthyl metabolite, 3-(2-carboxylphenyl)-2-naphthoic acid, was formed when M. vanbaalenii was incubated with benz[a]anthracene cis-5,6-dihydrodiol, indicating ortho-cleavage of 5,6-dihydroxybenz[a]anthracene. A minor amount of 5,6-dimethoxybenz[a]anthracene was also formed. The data extend and propose novel pathways for the bacterial metabolism of benz[a]anthracene.


Assuntos
Benzo(a)Antracenos/metabolismo , Mycobacterium/metabolismo , Benzo(a)Antracenos/química , Biodegradação Ambiental , Cromatografia Líquida de Alta Pressão , Cromatografia Gasosa-Espectrometria de Massas , Sedimentos Geológicos/microbiologia , Espectroscopia de Ressonância Magnética , Estrutura Molecular , Mycobacterium/crescimento & desenvolvimento , Mycobacterium/isolamento & purificação , Oxirredução , Hidrocarbonetos Policíclicos Aromáticos/química , Hidrocarbonetos Policíclicos Aromáticos/metabolismo , Poluentes do Solo/metabolismo
19.
Appl Microbiol Biotechnol ; 67(2): 275-85, 2005 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-15592827

RESUMO

The effects of pH on the growth of Mycobacterium vanbaalenii PYR-1 and its degradation of phenanthrene and pyrene were compared at pH 6.5 and pH 7.5. Various degradation pathways were proposed in this study, based on the identification of metabolites from mass and NMR spectral analyses. In tryptic soy broth, M. vanbaalenii PYR-1 grew more rapidly at pH 7.5 (mu'=0.058 h(-1)) than at pH 6.5 (mu'=0.028 h(-1)). However, resting cells suspended in phosphate buffers with the same pH values displayed a shorter lag time for the degradation of phenanthrene and pyrene at pH 6.5 (6 h) than at pH 7.5 (48 h). The one-unit pH drop increased the degradation rates four-fold. Higher levels of both compounds were detected in the cytosol fractions obtained at pH 6.5. An acidic pH seemed to render the mycobacterial cells more permeable to hydrophobic substrates. The major pathways for the metabolism of phenanthrene and pyrene were initiated by oxidation at the K-regions. Phenanthrene-9,10- and pyrene-4,5-dihydrodiols were metabolized via transient catechols to the ring fission products, 2,2'-diphenic acid and 4,5-dicarboxyphenanthrene, respectively. The metabolic pathways converged to form phthalic acid. At pH 6.5, M. vanbaalenii PYR-1 produced higher levels of the O-methylated derivatives of non-K-region phenanthrene- and pyrene-diols. Other non-K-region products, such as cis-4-(1-hydroxynaphth-2-yl)-2-oxobut-3-enoic acid, 1,2-dicarboxynaphthalene and benzocoumarin-like compounds, were also detected in the culture fluids. The non-K-region polycyclic aromatic hydrocarbon oxidation might be a significant burden to the cell due to the accumulation of toxic metabolites.


Assuntos
Mycobacterium/metabolismo , Fenantrenos/metabolismo , Pirenos/metabolismo , Biodegradação Ambiental , Concentração de Íons de Hidrogênio , Mycobacterium/crescimento & desenvolvimento
20.
Appl Microbiol Biotechnol ; 67(3): 405-11, 2005 May.
Artigo em Inglês | MEDLINE | ID: mdl-15856220

RESUMO

Cultures of Umbelopsis ramanniana (=Mucor ramannianus) were grown in fluid Sabouraud medium for 3 days, dosed with 0.23 mM benzo[f]quinoline, benzo[h]quinoline, or phenanthridine (benzo[c]quinoline), and incubated for another 18 days. Cultures were extracted and metabolites (66-75% of the UV absorbance) were separated by high-performance liquid chromatography. They were identified by mass spectrometry and nuclear magnetic resonance spectroscopy. Benzo[f]quinoline was metabolized to benzo[f]quinoline trans-7,8-dihydrodiol, benzo[f]quinoline N-oxide, and 7-hydroxybenzo[f]quinoline, benzo[h]quinoline was metabolized to benzo[h]quinoline trans-5,6-dihydrodiol, benzo[h]quinoline trans-7,8-dihydrodiol, and 7-hydroxybenzo[h]quinoline, and phenanthridine was metabolized to phenanthridine N-oxide and phenanthridin-6(5H)-one. At least one of the metabolites produced from each compound was mutagenic and could not be considered detoxified.


Assuntos
Mucor/metabolismo , Fenantridinas/metabolismo , Quinolinas/metabolismo , Biotransformação , Modelos Químicos , Mucor/química , Mucor/crescimento & desenvolvimento
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