A critical comparison of Lagrangian methods for coherent structure detection.

We review and test twelve different approaches to the detection of finite-time coherent material structures in two-dimensional, temporally aperiodic flows. We consider both mathematical methods and diagnostic scalar fields, comparing their performance on three benchmark examples: the quasiperiodically forced Bickley jet, a two-dimensional turbulence simulation, and an observational wind velocity field from Jupiter's atmosphere. A close inspection of the results reveals that the various methods often produce very different predictions for coherent structures, once they are evaluated beyond heuristic visual assessment. As we find by passive advection of the coherent set candidates, false positives and negatives can be produced even by some of the mathematically justified methods due to the ineffectiveness of their underlying coherence principles in certain flow configurations. We summarize the inferred strengths and weaknesses of each method, and make general recommendations for minimal self-consistency requirements that any Lagrangian coherence detection technique should satisfy.

Self-assembly in a near-frictionless granular material: conformational structures and transitions in uniaxial cyclic compression of hydrogel spheres.

We use a Markov transition matrix-based analysis to explore the structures and structural transitions in a three-dimensional assembly of hydrogel spheres under cyclic uniaxial compression. We apply these methods on experimental data obtained from a packing of nearly frictionless hydrogel balls. This allows an exploration of the emergence and evolution of mesoscale internal structures - a key micromechanical property that governs self-assembly and self-organization in dense granular media. To probe the mesoscopic force network structure, we consider two structural state spaces: (i) a particle and its contacting neighbours, and (ii) a particle's local minimal cycle topology summarized by a cycle vector. In both spaces, our analysis of the transition dynamics reveals which structures and which sets of structures are most prevalent and most likely to transform into each other during the compression/decompression of the material. In compressed states, structures rich in 3-cycle or triangle topologies form in abundance. In contrast, in uncompressed states, transitions comprising poorly connected structures are dominant. An almost-invariant transition set within the cycle vector space is discovered that identifies an intermediate set of structures crucial to the material's transition from weakly jammed to strongly jammed, and vice versa. Preferred transition pathways are also highlighted and discussed with respect to thermo-micro-mechanical constitutive formulations.

On fast computation of finite-time coherent sets using radial basis functions.

Finite-time coherent sets inhibit mixing over finite times. The most expensive part of the transfer operator approach to detecting coherent sets is the construction of the operator itself. We present a numerical method based on radial basis function collocation and apply it to a recent transfer operator construction [G. Froyland, "Dynamic isoperimetry and the geometry of Lagrangian coherent structures," Nonlinearity (unpublished); preprint arXiv:1411.7186] that has been designed specifically for purely advective dynamics. The construction [G. Froyland, "Dynamic isoperimetry and the geometry of Lagrangian coherent structures," Nonlinearity (unpublished); preprint arXiv:1411.7186] is based on a "dynamic" Laplace operator and minimises the boundary size of the coherent sets relative to their volume. The main advantage of our new approach is a substantial reduction in the number of Lagrangian trajectories that need to be computed, leading to large speedups in the transfer operator analysis when this computation is costly.

A rough-and-ready cluster-based approach for extracting finite-time coherent sets from sparse and incomplete trajectory data.

We present a numerical method to identify regions of phase space that are approximately retained in a mobile compact neighbourhood over a finite time duration. Our approach is based on spatio-temporal clustering of trajectory data. The main advantages of the approach are the ability to produce useful results (i) when there are relatively few trajectories and (ii) when there are gaps in observation of the trajectories as can occur with real data. The method is easy to implement, works in any dimension, and is fast to run.

Studying an Agulhas ring's long-term pathway and decay with finite-time coherent sets.

Coherent sets in dynamical systems are regions in phase space that optimally "carry mass" with them under the system's evolution, so that these regions experience minimal leakage. The dominant tool for determining coherent sets is the transfer operator, which provides a complete description of Lagrangian mass transport. In this work, we combine existing transfer operator methods with a windowing scheme to study the spatial and temporal evolution of a so-called Agulhas ring: a large anticyclonic mesoscale eddy playing a key role in inter-ocean exchange of climate-relevant properties. Our focus is on ring decay over time and the windowing scheme enables us to study how the most coherent region (our estimate of the ring) varies in position and size over a period of more than two years. We compare the eddy-like structure and its spatio-temporal changes as revealed by our method and by a classical Eulerian approach.

How well-connected is the surface of the global ocean?

The Ekman dynamics of the ocean surface circulation is known to contain attracting regions such as the great oceanic gyres and the associated garbage patches. Less well-known are the extents of the basins of attractions of these regions and how strongly attracting they are. Understanding the shape and extent of the basins of attraction sheds light on the question of the strength of connectivity of different regions of the ocean, which helps in understanding the flow of buoyant material like plastic litter. Using short flow time trajectory data from a global ocean model, we create a Markov chain model of the surface ocean dynamics. The surface ocean is not a conservative dynamical system as water in the ocean follows three-dimensional pathways, with upwelling and downwelling in certain regions. Using our Markov chain model, we easily compute net surface upwelling and downwelling, and verify that it matches observed patterns of upwelling and downwelling in the real ocean. We analyze the Markov chain to determine multiple attracting regions. Finally, using an eigenvector approach, we (i) identify the five major ocean garbage patches, (ii) partition the ocean into basins of attraction for each of the garbage patches, and (iii) partition the ocean into regions that demonstrate transient dynamics modulo the attracting garbage patches.

Revealing trends and persistent cycles of non-autonomous systems with autonomous operator-theoretic techniques.

An important problem in modern applied science is to characterize the behavior of systems with complex internal dynamics subjected to external forcings. Many existing approaches rely on ensembles to generate information from the external forcings, making them unsuitable to study natural systems where only a single realization is observed. A prominent example is climate dynamics, where an objective identification of signals in the observational record attributable to natural variability and climate change is crucial for making climate projections for the coming decades. Here, we show that operator-theoretic techniques previously developed to identify slowly decorrelating observables of autonomous dynamical systems provide a powerful means for identifying nonlinear trends and persistent cycles of non-autonomous systems using data from a single trajectory of the system. We apply our framework to real-world examples from climate dynamics: Variability of sea surface temperature over the industrial era and the mid-Pleistocene transition of Quaternary glaciation cycles.

Spectral analysis of climate dynamics with operator-theoretic approaches.

The Earth's climate system is a classical example of a multiscale, multiphysics dynamical system with an extremely large number of active degrees of freedom, exhibiting variability on scales ranging from micrometers and seconds in cloud microphysics, to thousands of kilometers and centuries in ocean dynamics. Yet, despite this dynamical complexity, climate dynamics is known to exhibit coherent modes of variability. A primary example is the El Niño Southern Oscillation (ENSO), the dominant mode of interannual (3-5 yr) variability in the climate system. The objective and robust characterization of this and other important phenomena presents a long-standing challenge in Earth system science, the resolution of which would lead to improved scientific understanding and prediction of climate dynamics, as well as assessment of their impacts on human and natural systems. Here, we show that the spectral theory of dynamical systems, combined with techniques from data science, provides an effective means for extracting coherent modes of climate variability from high-dimensional model and observational data, requiring no frequency prefiltering, but recovering multiple timescales and their interactions. Lifecycle composites of ENSO are shown to improve upon results from conventional indices in terms of dynamical consistency and physical interpretability. In addition, the role of combination modes between ENSO and the annual cycle in ENSO diversity is elucidated.

Transport in time-dependent dynamical systems: finite-time coherent sets.

We study the transport properties of nonautonomous chaotic dynamical systems over a finite-time duration. We are particularly interested in those regions that remain coherent and relatively nondispersive over finite periods of time, despite the chaotic nature of the system. We develop a novel probabilistic methodology based upon transfer operators that automatically detect maximally coherent sets. The approach is very simple to implement, requiring only singular vector computations of a matrix of transitions induced by the dynamics. We illustrate our new methodology on an idealized stratospheric flow and in two and three-dimensional analyses of European Centre for Medium Range Weather Forecasting (ECMWF) reanalysis data.

Efficient computation of topological entropy, pressure, conformal measures, and equilibrium states in one dimension.

We describe a fast and accurate method to compute the pressure and equilibrium states for maps of the interval T:[0,1]-->[0,1] with respect to potentials phi:[0,1]-->R. An approximate Ruelle-Perron-Frobenius operator is constructed and the pressure read off as the logarithm of the leading eigenvalue of this operator. By setting phi identical with 0, we recover the topological entropy. The conformal measure and the equilibrium state are computed as eigenvectors. Our approach is extremely efficient and very simple to implement. Rigorous convergence results are stated for piecewise expanding maps.

Mesoscale and macroscale kinetic energy fluxes from granular fabric evolution.

Recent advances in high-resolution measurements means it is now possible to identify and track the local "fabric" or contact topology of individual grains in a deforming sand throughout loading history. These provide compelling impetus to the development of methods for inferring changes in the contact forces and energies at multiple spatiotemporal scales, using information on grain contacts alone. Here we develop a surrogate measure of the fluctuating kinetic energy based on changes in the local contact topology of individual grains. We demonstrate the method for dense granular materials under quasistatic biaxial shear. In these systems, the initially stable and solidlike response eventually gives way to liquidlike behavior and global failure. This crossover in mechanical behavior, akin to a phase transition, is marked by bursts of kinetic energy and frictional dissipation. Mechanisms underlying this release of energy include the buckling of major load-bearing structures known as force chains. These columns of grains represent major repositories for stored strain energy. Stored energy initially accumulates at all of the contacts along the force chain, but is released collectively when the chain overloads and buckles. The exact quantification of the buildup and release of energy in force chains, and the manner in which force chain buckling propagates in the sample (i.e., diffuse and systemwide versus localized into shear bands), requires detailed knowledge of contact forces. To date, however, the forces at grain contacts continue to elude measurement in natural granular materials like sand. Here, using data from computer simulations, we show that a proxy for the fluctuating kinetic energy in dense granular materials can be suitably constructed solely from the evolving properties of the grain's local contact topology. Our approach directly relates the evolution of fabric to energy flux and makes possible research into the propagation of failure from measurements of grain contacts in real granular materials.

Transition dynamics and magic-number-like behavior of frictional granular clusters.

Force chains, the primary load-bearing structures in dense granular materials, rearrange in response to applied stresses and strains. These self-organized grain columns rely on contacts from weakly stressed grains for lateral support to maintain and find new stable states. However, the dynamics associated with the regulation of the topology of contacts and strong versus weak forces through such contacts remains unclear. This study of local self-organization of frictional particles in a deforming dense granular material exploits a transition matrix to quantify preferred conformations and the most likely conformational transitions. It reveals that favored cluster conformations reside in distinct stability states, reminiscent of "magic numbers" for molecular clusters. To support axial loads, force chains typically reside in more stable states of the stability landscape, preferring stabilizing trusslike, three-cycle contact triangular topologies with neighboring grains. The most likely conformational transitions during force chain failure by buckling correspond to rearrangements among, or loss of, contacts which break the three-cycle topology.

Optimally coherent sets in geophysical flows: a transfer-operator approach to delimiting the stratospheric polar vortex.

The "edge" of the Antarctic polar vortex is known to behave as a barrier to the meridional (poleward) transport of ozone during the austral winter. This chemical isolation of the polar vortex from the middle and low latitudes produces an ozone minimum in the vortex region, intensifying the ozone hole relative to that which would be produced by photochemical processes alone. Observational determination of the vortex edge remains an active field of research. In this paper, we obtain objective estimates of the structure of the polar vortex by introducing a technique based on transfer operators that aims to find regions with minimal external transport. Applying this technique to European Centre for Medium-Range Weather Forecasts (ECMWF) ERA-40 three-dimensional velocity data, we produce an improved three-dimensional estimate of the vortex location in the upper stratosphere where the vortex is most pronounced. This computational approach has wide potential application in detecting and analyzing mixing structures in a variety of atmospheric, oceanographic, and general fluid dynamical settings.

Detection of coherent oceanic structures via transfer operators.

Coherent nondispersive structures are known to play a crucial role in explaining transport in nonautonomous dynamical systems such as ocean flows. These structures are difficult to extract from model output as they are Lagrangian by nature and not revealed by the underlying Eulerian velocity fields. In the last few years heuristic concepts such as finite-time Lyapunov exponents have been used in an attempt to detect barriers to oceanic transport and thus identify regions that trap material such as nutrients and phytoplankton. In this Letter we pursue a novel, more direct approach to uncover coherent regions in the surface ocean using high-resolution model velocity data. Our method is based upon numerically constructing a transfer operator that controls the surface transport of particles over a short period. We apply our technique to the polar latitudes of the Southern Ocean.