Detalhe da pesquisa
1.
iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Bioinformatics
; 36(1): 112-121, 2020 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31199455
2.
An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
Proteins
; 88(8): 1029-1036, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31886559
3.
Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.
Bioinformatics
; 35(9): 1585-1587, 2019 05 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31051038
4.
iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations.
Proteins
; 87(2): 110-119, 2019 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-30417935
5.
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
J Comput Aided Mol Des
; 32(1): 175-185, 2018 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28831657
6.
N-glycoform diversity of cellobiohydrolase I from Penicillium decumbens and synergism of nonhydrolytic glycoform in cellulose degradation.
J Biol Chem
; 287(19): 15906-15, 2012 May 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-22427663
7.
MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.
Biomolecules
; 13(1)2023 01 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36671507
8.
DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
Nat Commun
; 12(1): 7068, 2021 12 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-34862392
9.
iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines.
SoftwareX
; 112020.
Artigo
em Inglês
| MEDLINE | ID: mdl-35419466
10.
Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.
Methods Mol Biol
; 1561: 109-138, 2017.
Artigo
em Inglês
| MEDLINE | ID: mdl-28236236
11.
Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes.
Protein Eng Des Sel
; 29(8): 291-299, 2016 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-27284087
12.
Purification, cloning, characterization and essential amino acid residues analysis of a new ι-carrageenase from Cellulophaga sp. QY3.
PLoS One
; 8(5): e64666, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23741363