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1.
Biotechnol Appl Biochem ; 61(3): 297-303, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24571591

RESUMO

Enzymes entrapped in wet, nanoporous silica gel have great potential as bioreactors for bioremediation because of their improved thermal, chemical, and mechanical stability with respect to enzymes in solution. The B isozyme of catechol 1,2 dioxygenase from Acinetobacter radioresistens and its mutants of Leu69 and Ala72, designed for an increased reactivity toward the environmental pollutant chlorocatechols, were encapsulated using alkoxysilanes and alkyl alkoxysilanes as precursors in varying proportions. Encapsulation of the mutants in a hydrophobic tetramethoxysilane/dimethoxydimethylsilane-based matrix yielded a remarkable 10- to 12-fold enhancement in reactivity toward chlorocatechols. These gels also showed a fivefold increase in relative reactivity toward chlorocatechols with respect to the natural substrate catechol, thus compensating for their relatively low activity for these substrates in solution. The encapsulated enzyme, unlike the enzyme in solution, proved resilient in assays carried out in urban wastewater and bacteria-contaminated solutions mimicking environmentally relevant conditions. Overall, the combination of a structure-based rational design of enzyme mutants, and the selection of a suitable encapsulation material, proved to be a powerful approach for the production and optimization of a potential bioremediation device, with increased activity and resistance toward bacterial degradation.


Assuntos
Catecol 1,2-Dioxigenase/metabolismo , Catecóis/metabolismo , Géis/metabolismo , Engenharia de Proteínas , Siloxanas/metabolismo , Acinetobacter/enzimologia , Biodegradação Ambiental , Reatores Biológicos , Catecol 1,2-Dioxigenase/genética , Catecóis/química
3.
Biometals ; 26(1): 75-84, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23224984

RESUMO

Intradiol dioxygenase are iron-containing enzymes involved in the bacterial degradation of natural and xenobiotic aromatic compounds. The wild-type and mutants forms of catechol 1,2-dioxygenase Iso B from Acinetobacter radioresistens LMG S13 have been investigated in order to get an insight on the structure-function relationships within this system. 4K CW-EPR spectroscopy highlighted different oxygen binding properties of some mutants with respect to the wild-type enzyme, suggesting that a fine tuning of the substrate-binding determinants in the active site pocket may indirectly result in variations of the iron reactivity. A thermostability investigation by optical spectroscopy, that reports on the state of the metal center, showed that the structural stability is more influenced by the type rather than by the position of the mutation. Finally, the influence of pH and temperature on the catalytic activity was monitored and discussed in terms of perturbations induced on the tertiary contact network of the enzyme.


Assuntos
Acinetobacter/enzimologia , Proteínas de Bactérias/química , Catecol 1,2-Dioxigenase/química , Substituição de Aminoácidos , Proteínas de Bactérias/genética , Catecol 1,2-Dioxigenase/genética , Espectroscopia de Ressonância de Spin Eletrônica , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Mutagênese Sítio-Dirigida , Oxigênio/química , Soluções , Temperatura de Transição
4.
Biochim Biophys Acta ; 1814(6): 817-23, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20869471

RESUMO

Intradiol-cleaving catechol 1,2 dioxygenases are Fe(III) dependent enzymes that act on catechol and substituted catechols, including chlorocatechols pollutants, by inserting molecular oxygen in the aromatic ring. Members of this class are the object of intense biochemical investigations aimed at the understanding of their catalytic mechanism, particularly for designing mutants with selected catalytic properties. We report here an in depth investigation of catechol 1,2 dioxygenase IsoB from Acinetobacter radioresistens LMG S13 and its A72G and L69A mutants. By applying a multidisciplinary approach that includes high resolution X-rays crystallography, mass spectrometry and single crystal microspectrophotometry, we characterised the phospholipid bound to the enzyme and provided a structural framework to understand the inversion of substrate specificity showed by the mutants. Our results might be of help for the rational design of enzyme mutants showing a biotechnologically relevant substrate specificity, particularly to be used in bioremediation. This article is part of a Special Issue entitled: Protein Structure and Function in the Crystalline State.


Assuntos
Catecol 1,2-Dioxigenase/química , Acinetobacter/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Catecol 1,2-Dioxigenase/metabolismo , Catecóis/química , Catecóis/metabolismo , Cristalografia por Raios X/métodos , Glicosilfosfatidilinositóis/química , Glicosilfosfatidilinositóis/metabolismo , Espectrometria de Massas/métodos , Microespectrofotometria/métodos , Modelos Moleculares , Mutação , Ligação Proteica
5.
Proteomics ; 11(11): 2212-21, 2011 06.
Artigo em Inglês | MEDLINE | ID: mdl-21548091

RESUMO

Selenium (Se), Se-cysteines and selenoproteins have received growing interest in the nutritional field as redox-balance modulating agents. The aim of this study was to establish the Se-concentrating and Se-metabolizing capabilities of the probiotic Lactobacillus reuteri Lb26 BM, for nutraceutical applications. A comparative proteomic approach was employed to study the bacteria grown in a control condition (MRS modified medium) and in a stimulated condition (4.38 mg/L of sodium selenite). The total protein extract was separated into two pI ranges: 4-7 and 6-11; the 25 identified proteins were divided into five functional classes: (i) Se metabolism; (ii) energy metabolism; (iii) stress/adhesion; (iv) cell shape and transport; (v) proteins involved in other functions. All the experimental results indicate that L. reuteri Lb26 BM is able to metabolize Se(IV), incorporating it into selenoproteins, through the action of a selenocysteine lyase, thus enhancing organic Se bioavailability. This involves endo-ergonic reactions balanced by an increase of substrate-level phosphorylation, chiefly through lactic fermentation. Nevertheless, when L. reuteri was grown on Se a certain degree of stress was observed, and this has to be taken into account for future applicative purposes. The proteomic approach has proven to be a powerful tool for the metabolic characterization of potential Se-concentrating probiotics.


Assuntos
Limosilactobacillus reuteri/química , Probióticos , Proteômica/métodos , Selênio/metabolismo , Antioxidantes/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/classificação , Proteínas de Bactérias/metabolismo , Metabolismo dos Carboidratos , Adesão Celular , Forma Celular , Eletroforese em Gel Bidimensional , Concentração de Íons de Hidrogênio , Ponto Isoelétrico , Limosilactobacillus reuteri/citologia , Limosilactobacillus reuteri/metabolismo , Redes e Vias Metabólicas , Microscopia Eletrônica de Transmissão , Estresse Fisiológico
6.
Amino Acids ; 41(2): 517-27, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20976511

RESUMO

Amine production by amino acid decarboxylation is a common feature that is used by lactic acid bacteria (LAB) to complement lactic fermentation, since it is coupled with a proton-extruding antiport system which leads to both metabolic energy production and the attenuation of intracellular acidity. Analogous roles are played in LAB by both malolactic fermentation (MLF) and the arginine deiminase (ADI) pathway. The present investigation was aimed at establishing reciprocal interactions between amino acid decarboxylation and the two above mentioned routes. The analyses were carried out on a Lactobacillus hilgardii strain (ISE 5211) that is able to decarboxylate histidine to histamine, which had previously been isolated from wine and whose complete genome is still unknown. The 2DE proteomic approach, followed by MALDI TOF-TOF and De Novo Sequencing, was used to study the protein expression levels. The experimental evidence has indicated that malate does not influence histidine decarboxylase (HDC) biosynthesis and that histidine does not affect the malolactic enzyme level. However, the expression of the ADI route enzymes, arginine deiminase and ornithine transcarbamylase, is down-regulated by histidine: this biosynthetic repression is more important (4-fold) in cultures that are not supplemented with arginine, but is also significant (2-fold) in an arginine supplemented medium that normally induces the ADI pathway. On the other hand, arginine partially represses HDC expression, but only when histidine and arginine are both present in the culture medium. This proteomic study has also pointed out a down-regulation exerted by histidine over sugar metabolism enzymes and a GroEL stress protein. These data, together with the reciprocal antagonism between arginine deimination and histidine decarboxylation, offer clue keys to the understanding of the accumulation of lactate, amine, ammonia and ethylcarbamate in wine, with consequent implications on different health risk controls.


Assuntos
Proteínas de Bactérias/metabolismo , Regulação Bacteriana da Expressão Gênica , Histidina Descarboxilase/genética , Histidina/metabolismo , Hidrolases/metabolismo , Lactobacillus/fisiologia , Argininossuccinato Sintase/metabolismo , Chaperonina 60/metabolismo , Descarboxilação , Eletroforese em Gel Bidimensional , Perfilação da Expressão Gênica , Glutamato-tRNA Ligase/metabolismo , Histidina-tRNA Ligase/metabolismo , Lactobacillus/enzimologia , Lactobacillus/isolamento & purificação , Malato Desidrogenase/metabolismo , Redes e Vias Metabólicas/genética , Fosfoglucomutase/metabolismo , Complexo Piruvato Desidrogenase/metabolismo , Vinho/efeitos adversos , Vinho/microbiologia
7.
Amino Acids ; 39(3): 727-37, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20174841

RESUMO

GABA is a molecule of increasing nutraceutical interest due to its modulatory activity on the central nervous system and smooth muscle relaxation. Potentially probiotic bacteria can produce it by glutamate decarboxylation, but nothing is known about the physiological modifications occurring at the microbial level during GABA production. In the present investigation, a GABA-producing Lactococcus lactis strain grown in a medium supplemented with or without glutamate was studied using a combined transcriptome/proteome analysis. A tenfold increase in GABA production in the glutamate medium was observed only during the stationary phase and at low pH. About 30 genes and/or proteins were shown to be differentially expressed in glutamate-stimulated conditions as compared to control conditions, and the modulation exerted by glutamate on entire metabolic pathways was highlighted by the complementary nature of transcriptomics and proteomics. Most glutamate-induced responses consisted in under-expression of metabolic pathways, with the exception of glycolysis where either over- or under-expression of specific genes was observed. The energy-producing arginine deiminase pathway, the ATPase, and also some stress proteins were down-regulated, suggesting that glutamate is not only an alternative means to get energy, but also a protective agent against stress for the strain studied.


Assuntos
Perfilação da Expressão Gênica , Ácido Glutâmico/metabolismo , Lactococcus lactis/metabolismo , Proteômica , Ácido gama-Aminobutírico/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Regulação Bacteriana da Expressão Gênica , Lactococcus lactis/genética , Lactococcus lactis/crescimento & desenvolvimento
8.
Proteomics ; 9(10): 2695-710, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19405032

RESUMO

The soluble and membrane proteome of a tyramine producing Enterococcus faecalis, isolated from an Italian goat cheese, was investigated. A detailed analysis revealed that this strain also produces small amounts of beta-phenylethylamine. Kinetics of tyramine and beta-phenylethylamine accumulation, evaluated in tyrosine plus phenylalanine-enriched cultures (stimulated condition), suggest that the same enzyme, the tyrosine decarboxylase (TDC), catalyzes both tyrosine and phenylalanine decarboxylation: tyrosine was recognized as the first substrate and completely converted into tyramine (100% yield) while phenylalanine was decarboxylated to beta-phenylethylamine (10% yield) only when tyrosine was completely depleted. The presence of an aspecific aromatic amino acid decarboxylase is a common feature in eukaryotes, but in bacteria only indirect evidences of a phenylalanine decarboxylating TDC have been presented so far. Comparative proteomic investigations, performed by 2-DE and MALDI-TOF/TOF MS, on bacteria grown in conditions stimulating tyramine and beta-phenylethylamine biosynthesis and in control conditions revealed 49 differentially expressed proteins. Except for aromatic amino acid biosynthetic enzymes, no significant down-regulation of the central metabolic pathways was observed in stimulated conditions, suggesting that tyrosine decarboxylation does not compete with the other energy-supplying routes. The most interesting finding is a membrane-bound TDC highly over-expressed during amine production. This is the first evidence of a true membrane-bound TDC, longly suspected in bacteria on the basis of the gene sequence.


Assuntos
Eletroforese em Gel Bidimensional , Enterococcus faecalis/enzimologia , Fenetilaminas/metabolismo , Tiramina/metabolismo , Tirosina Descarboxilase/metabolismo , Aminas Biogênicas/metabolismo , Queijo/microbiologia , Interpretação Estatística de Dados , Enterococcus faecalis/genética , Enterococcus faecalis/metabolismo , Microbiologia de Alimentos , Cinética , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Proteômica , Tirosina Descarboxilase/genética
9.
Chembiochem ; 10(6): 1015-24, 2009 Apr 17.
Artigo em Inglês | MEDLINE | ID: mdl-19301316

RESUMO

Catechol 1,2-dioxygenases and chlorocatechol dioxygenases are Fe(III)-dependent enzymes that do not require a reductant to perform the ortho cleavage of the aromatic ring. The reaction mechanism is common to the two enzymes, and active-site residues must play a key role in the fine-tuning of specificity. Protein engineering was applied for the first time to the catalytic pocket of a catechol 1,2-dioxygenase by site-specific and site-saturation mutagenesis with the purpose of redesigning the pocket shape for improved catalysis on bulky derivatives. Mutants were analysed for changes in kinetic parameters: variants for residue 69 show an inversion of specificity with a preference towards 4-chlorocatechol (decrease of K(M) by a factor of 20) and activity on the rarely recognised substrate 4,5-dichlorocatechol, thus creating a novel, engineered chlorocatechol dioxygenase. A L69A substitution conveys gain-of-function activity towards 4-tert-butylcatechol. Mutations of position 72 enhance k(cat) towards chlorinated substrates. The biphasic Arrhenius plot observed in A72S suggests the involvement of a dynamic switch in the fine regulation of the enzyme.


Assuntos
Biocatálise , Domínio Catalítico , Catecol 1,2-Dioxigenase/química , Catecol 1,2-Dioxigenase/genética , Engenharia de Proteínas/métodos , Acinetobacter/enzimologia , Sequência de Aminoácidos , Catecol 1,2-Dioxigenase/metabolismo , Estabilidade Enzimática , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Mutação , Especificidade por Substrato
10.
Carbohydr Res ; 341(5): 582-90, 2006 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-16445894

RESUMO

The structure of the core oligosaccharide of the lipopolysaccharide from an organic solvent tolerant Gram-negative bacterium, Acinetobacter radioresistens S13, was investigated by chemical analysis, NMR spectroscopy and MALDI-TOF mass spectrometry. All the experiments were performed on the oligosaccharides obtained either by alkaline degradation or mild acid hydrolysis. The data showed the presence of two novel oligosaccharide molecules containing a trisaccharide of 3-deoxy-D-manno-octulopyranosonic acid in the inner core region and a glucose rich outer core whose structure is the following: [structure: see text] R=H in the main oligosaccharide and beta-Glc in the minor product. The bacterium was grown on aromatic (phenol and benzoic acid) and nonaromatic carbon sources and the core oligosaccharide resulted to occur always with this novel structure.


Assuntos
Acinetobacter/química , Acinetobacter/efeitos dos fármacos , Lipídeo A/química , Compostos Orgânicos/farmacologia , Solventes/farmacologia , Configuração de Carboidratos , Sequência de Carboidratos , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
11.
Res Microbiol ; 153(2): 69-74, 2002 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11900265

RESUMO

Two novel catechol 1,2-dioxygenase (C 1,2-O) genes have been isolated from an Acinetobacter radioresistens strain that grows on phenol or benzoate as sole carbon and energy source. Designated as catA(A) and catA(B), they encode proteins composed of 314 and 306 amino acids, whose deduced sequences indicate that they have approximately 53% identity, whereas their NH2-terminal and COOH-terminal regions have no sequences in common. This may explain their different thermal and pH stability. Polyclonal antibodies raised against an amino-terminal CatA(A) peptide or the whole CatA(B) protein were used to establish their inducible and differential expression patterns upon bacterial growth in phenol or benzoate. The CatA(A) protein (IsoA) was induced by both phenol and benzoate though with different kinetics, whereas the catA(B) product (IsoB) was constitutively produced at low levels that increased only during growth in the presence of benzoate.


Assuntos
Acinetobacter/enzimologia , Clonagem Molecular , Dioxigenases , Regulação Bacteriana da Expressão Gênica , Oxigenases/genética , Oxigenases/metabolismo , Acinetobacter/genética , Acinetobacter/crescimento & desenvolvimento , Sequência de Aminoácidos , Benzoatos/metabolismo , Catecol 1,2-Dioxigenase , Genes Bacterianos , Isoenzimas/genética , Isoenzimas/metabolismo , Dados de Sequência Molecular , Oxigenases/química , Fenóis/metabolismo , Alinhamento de Sequência , Análise de Sequência de DNA , Transcrição Gênica
12.
Mol Biosyst ; 7(3): 598-607, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-20953507

RESUMO

In the present study, the high isoelectric point sub-proteome of Acinetobacter radioresistens S13 grown on aromatic compounds (benzoate or phenol) was analyzed and compared to the protein pattern, in the same pI range, of acetate-grown bacteria (control condition). Analyses concerned both soluble and membrane enriched proteomes and led to the identification of 25 proteins that were differentially expressed among the growth conditions considered: most of them were up-regulated in cells grown on aromatic compounds. Up to 17 identified proteins can be, more or less directly, related to the so called "envelope stress responses": these signal transduction pathways are activated when bacterial cells are exposed to stressing environments (e.g., heat, pH stress, organic solvents, osmotic stress) causing accumulation of misfolded/unfolded cell wall proteins into the periplasmic space. For, at least, five of these proteins (a DegP-like serine protease, a peptidyl-prolyl cis-trans isomerase, a phosphatidylserine decarboxylase, a pseudouridine synthase, and a TolB-like protein) a direct induction via either the σ(E) or the Cpx alternative signalling systems mediating envelope stress responses was previously demonstrated in Gram-negative bacteria. The proteins identified in this study include periplasmic proteases, chaperones, enzymes catalyzing peptydoglycan biogenesis, proteins involved in outer membrane integrity, cell surface properties and cellular redox homeostasis. The present study brings additional information to previous works on the acidic proteome of A. radioresistens S13, thus complementing and refining the metabolic picture of this bacterial strain during growth on aromatic compounds.


Assuntos
Acinetobacter/efeitos dos fármacos , Acinetobacter/metabolismo , Proteínas de Bactérias/análise , Benzoatos/farmacologia , Fenóis/farmacologia , Proteoma/análise , Estresse Fisiológico/efeitos dos fármacos , Acinetobacter/química , Ponto Isoelétrico , Estresse Oxidativo/efeitos dos fármacos , Estresse Oxidativo/fisiologia , Dobramento de Proteína/efeitos dos fármacos
13.
J Biol Inorg Chem ; 12(3): 313-23, 2007 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-17235582

RESUMO

This work provides functional data showing that the bacterial CYP102A1 recognises compounds metabolised by human CYP3A4, CYP2E1 and CYP1A2 and is able to catalyse different reactions. Wild-type cytochrome CYP102A1 from Bacillus megaterium is a catalytically self-sufficient enzyme, containing an NADPH-dependent reductase and a P450 haem domain fused in a single polypeptidie chain. An NADPH-dependent method (Tsotsou et al. in Biosens. Bioelectron. 17:119-131, 2002) together with spectroscopic assays were applied to investigate the catalytic activity of CYP102A1 towards 19 xenobiotics, including 17 commercial drugs. These molecules were chosen to represent typical substrates of the five main families of drug-metabolising human cytochromes P450. Liquid chromatography-mass spectrometry analysis showed that CYP102A1 catalyses the hydroxylation of chlorzoxazone, aniline and p-nitrophenol, as well as the N-dealkylation of propranolol and the dehydrogenation of nifedipine. These drugs are typical substrates of human CYP2E1 and CYP3A4. The KM values calculated for these compounds were in the millimolar range: 1.21+/-0.07 mM for chlorzoxazone, 2.52 +/- 0.08 mM for aniline, 0.81+/-0.04 mM for propranolol. The values of vmax for chlorzoxazone and propranolol were 46.0+/-9.0 and 7.6+/-3.4 nmol min-1 nmol-1, respectively. These values are higher then those measured for the human enzymes. The vmax value for aniline was 9.4+/-1.3 nmol min-1 nmol-1, comparable to that calculated for human cytochromes P450. The functional data were found to be in line with the sequence alignments, showing that the identity percentage of CYP102A1 with CYP3A4 and CYP2E1 is higher than that found for CYP1A2, CYP2C9 and CYP2D6 families.


Assuntos
Proteínas de Bactérias/química , Sistema Enzimático do Citocromo P-450/química , Oxigenases de Função Mista/química , Preparações Farmacêuticas/metabolismo , Catálise , Cromatografia Líquida , Sistema Enzimático do Citocromo P-450/metabolismo , Humanos , Fígado/enzimologia , Espectrometria de Massas , NADPH-Ferri-Hemoproteína Redutase , Especificidade por Substrato
14.
Electrophoresis ; 28(10): 1633-8, 2007 May.
Artigo em Inglês | MEDLINE | ID: mdl-17492720

RESUMO

Despite the large number of papers dealing with bacterial proteomes, very few include information about proteins with alkaline pI's, because of the limits inherent in 2-DE technology. Nonetheless, analyses of in silico proteomes of many prokaryotes show a bimodal distribution of their proteins based on their pI's; the most crowded areas lying between pI 4-7 and 9-11. The aim of the present research was to set up a general, simple, and standardizable 2-DE protocol suitable for studying the alkaline proteome of Lactobacillus hilgardii, a Gram-positive bacillus isolated from wine. The method has also been tested on a Gram-negative bacterium able to degrade aromatic pollutants, Acinetobacter radioresistens S13. Optimization of the method was mainly focused on improving protein extraction and IEF (pI 6-11) separation protocols. Concerning IEF, different methods for sample loading (in-gel rehydration and cup loading), and different reducing agents (DTT and bis(2-hydroxyethyl) disulfide (HED)) were tested and compared. The proposed protocol was found to resolve efficiently alkaline proteins from both of our Lactobacillus and Acinetobacter strains, in spite of their different external layers, thus, enabling a more comprehensive study of their proteomes.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Extratos Celulares/química , Dissulfetos/química , Eletroforese em Gel Bidimensional/métodos , Etanol/análogos & derivados , Focalização Isoelétrica/métodos , Lactobacillus/química , Lactobacillus/metabolismo , Acinetobacter/química , Etanol/química , Concentração de Íons de Hidrogênio , Ponto Isoelétrico , Mapeamento de Peptídeos/métodos , Reprodutibilidade dos Testes , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Tripsina/metabolismo , Vinho/microbiologia
15.
Arch Microbiol ; 188(1): 55-68, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17483933

RESUMO

Acinetobacter radioresistens S13 is able to grow on phenol or benzoate as the sole carbon and energy source: both these compounds are catabolized through the beta-ketoadipate pathway. Genes encoding the catabolic enzymes for degradation of aromatic compounds are localized on A. radioresistens S13 chromosome and organized in, at least, two distinct sets, one for benzoate degradation and another for phenol catabolism. In the present study, the growth and biodegradation kinetics for benzoate and phenol, and an easily metabolized substrate (acetate) were established. Benzoate was degraded slower and supports a less rapid and efficient growth than either acetate or phenol. A combined transcript-proteomic analysis of some of the major catabolic genes and their products nonetheless has shown that benzoate induces the expression of both benzoate and phenol catabolic operons. This result was confirmed by the fact that benzoate-acclimatized bacteria were rapidly able to degrade phenol too. Finally, the growth and biodegradation kinetics for different mixtures of acetate, benzoate and phenol were determined. Results indicate that a hierarchy of substrate utilization, benzoate > acetate > phenol, occurred: benzoate was the preferred substrate, despite its lower growth and biodegradation parameters. Hypotheses explaining these unusual metabolic features of A. radioresistens S13 are discussed.


Assuntos
Acinetobacter/metabolismo , Benzoatos/metabolismo , Fenol/metabolismo , Acinetobacter/genética , Acinetobacter/crescimento & desenvolvimento , Proteínas de Bactérias/análise , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Benzoatos/farmacologia , Biodegradação Ambiental , Eletroforese em Gel Bidimensional , Regulação Bacteriana da Expressão Gênica/efeitos dos fármacos , Cinética , Fenol/farmacologia , Proteoma/análise , Proteoma/metabolismo , Transcrição Gênica/efeitos dos fármacos
16.
J Lipid Res ; 48(5): 1045-51, 2007 May.
Artigo em Inglês | MEDLINE | ID: mdl-17272830

RESUMO

The genus Acinetobacter is composed of ubiquitous, generally nonpathogen environmental bacteria. Interest concerning these microorganisms has increased during the last 30 years, because some strains, belonging to the so-called A. baumannii-A. calcoaceticus complex, have been implicated in some severe pathological states in debilitated and hospitalized patients. The involvement of lipopolysaccharides (LPSs) as virulence factors in infections by Acinetobacter has been proven, and ongoing studies are aimed toward the complete serological characterization of the O-polysaccharides from LPSs isolated in clinical samples. Conversely, no characterization of the lipid A fraction from Acinetobacter strains has been performed. Here, the detailed structure of the lipid A fraction from A. radioresistens S13 is reported for the first time. A. radioresistens strains have never been isolated in cases of infectious disease. Nevertheless, it is known that the lipid A structure, with minor variations, is highly conserved across the genus; thus, structural details acquired from studies of this nonpathogen strain represent a useful basis for further studies of pathogen species.


Assuntos
Acinetobacter/química , Lipídeo A/química , Acinetobacter/patogenicidade , Lipídeo A/isolamento & purificação , Estrutura Molecular , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
17.
Proteomics ; 5(3): 687-98, 2005 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15714464

RESUMO

All fermented foods are subject to the risk of biogenic amine contamination. Histamine and tyramine are among the most toxic amines for consumers' health, exerting undesirable effects on the central nervous and vascular systems, but putrescine and cadaverine can also compromise the organoleptic properties of contaminated foods. These compounds are produced by fermenting microbial flora that decarboxylate amino acids to amines. Little is known of the factors which induce biosynthesis of decarboxylating enzymes and/or which modulate their catalytic activity: the accumulation of amines is generally considered to be a mechanism that contrasts an acidic environment and/or that produces metabolic energy through coupling amino acid decarboxylation with electrogenic amino acid/amine antiporters. Two Lactobacillus strains, Lactobacillus sp. 30a (ATCC 33222), and a Lactobacillus sp. strain (w53) isolated from amine-contaminated wine, carrying genetic determinants for histidine decarboxylase (HDC) and ornithine decarboxylase (ODC), were studied and the influence of some environmental and nutritional parameters on amine production and protein biosynthesis was analyzed through a proteomic approach; this is the first report of a proteomic analysis of amine-producing bacteria. HDC and ODC biosynthesis were shown to be closely dependent on the presence of high concentrations of free amino acids in the growth medium and to be modulated by the growth phase. The stationary phase and high amounts of free amino acids also strongly induced the biosynthesis of an oligopeptide transport protein belonging to the proteolytic system of Lactic Acid Bacteria. At least two isoforms of glyceraldehyde-3-phosphate dehydrogenase, with different M(r), pI and expression profiles, were identified from Lactobacillus sp. w53: the biosynthesis of one isoform, in particular, is apparently repressed by high concentrations of free amino acids. Other proteins were identified from the Lactobacillus proteome, affording a global knowledge of protein biosynthesis modulation during biogenic amine production.


Assuntos
Aminas Biogênicas/biossíntese , Histidina Descarboxilase/biossíntese , Lactobacillus/enzimologia , Ornitina Descarboxilase/biossíntese , Sequência de Aminoácidos , Aminoácidos/metabolismo , Meios de Cultura , Eletroforese em Gel Bidimensional , Isoenzimas/biossíntese , Lactobacillus/genética , Lactobacillus/crescimento & desenvolvimento , Dados de Sequência Molecular , Proteoma/análise , Proteômica , Vinho/microbiologia
18.
Arch Biochem Biophys ; 431(1): 79-87, 2004 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-15464729

RESUMO

The reversible active site metal ion removal process for two catechol 1,2-dioxygenase isoenzymes (IsoA and IsoB) isolated from Acinetobacter radioresistens S13 has been monitored using circular dichroism and fluorescence spectroscopic techniques. IsoA and IsoB are homodimers, containing one iron(III) ion per subunit. Their amino acid sequence identity is 48.4%. Previous experiments suggested that structural diversities could be responsible for the differential thermal and pH stabilities of the two isoenzymes and of their distinct demetallation kinetics. The far-UV CD spectra of IsoA and IsoB catechol 1,2-dioxygenases from A. radioresistens S13 provide information on their secondary structures. IsoB appears to have a content of alpha-helices higher than IsoA. Upon metal ion removal, both proteins reversibly lose part of their secondary structure following distinct pathways. CD spectra simulations allowed us to estimate the content of alpha-helices, beta-sheets, and turns for each isoenzyme and to monitor the secondary structure rearrangements. The metal ion withdrawal has large influence on the secondary structure: in particular a significant reduction of alpha-helices content is observed for both isoenzymes. Intrinsic fluorescence emission spectra clearly support such results, adding information on the local environment changes of the tryptophan residues. The positioning of Trp250 in IsoB has been shown to be of particular interest for monitoring the local structure changes occurring upon metal ion removal. For the first time these studies allow to underline the role of active site iron ions on dioxygenases folding and stability, further evidencing the differences in structural assembling between the two isoenzymes from A. radioresistens S13.


Assuntos
Acinetobacter/enzimologia , Dioxigenases/metabolismo , Ferro/metabolismo , Catecol 1,2-Dioxigenase , Dicroísmo Circular , Dioxigenases/química , Isoenzimas/metabolismo , Estrutura Secundária de Proteína , Espectrometria de Fluorescência
19.
Eur J Biochem ; 270(7): 1434-40, 2003 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-12653998

RESUMO

This paper reports the isolation and characterization of the regulatory moiety of the multicomponent enzyme phenol hydroxylase from Acinetobacter radioresistens S13 grown on phenol as the only carbon and energy source. The whole enzyme comprises an oxygenase moiety (PHO), a reductase moiety (PHR) and a regulatory moiety (PHI). PHR contains one FAD and one iron-sulfur cluster, whose function is electron transfer from NADH to the dinuclear iron centre of the oxygenase. PHI is required for catalysis of the conversion of phenol to catechol in vitro, but is not required for PHR activity towards alternative electron acceptors such as cytochrome c and Nitro Blue Tetrazolium. The molecular mass of PHI was determined to be 10 kDa by SDS/PAGE, 8.8 kDa by MALDI-TOF spectrometry and 18 kDa by gel-permeation. This finding suggests that the protein in its native state is a homodimer. The isoelectric point is 4.1. PHI does not contain any redox cofactor and does not bind ANS, a fluorescent probe for hydrophobic sites. The N-terminal sequence is similar to those of the regulatory proteins of phenol hydroxylase from A. calcoaceticus and Pseudomonas CF 600. In the reconstituted system, optimal reaction rate was achieved when the stoichiometry of the components was 2 PHR monomers: 1 PHI dimer: 1 PHO (alphabetagamma) dimer. PHI interacts specifically with PHR, promoting the enhancement of FAD fluorescence emission. This signal is diagnostic of a conformational change of PHR that might result in a better alignment with respect to PHO.


Assuntos
Acinetobacter/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Oxigenases de Função Mista/química , Oxigenases de Função Mista/isolamento & purificação , Sequência de Aminoácidos , Proteínas de Bactérias/metabolismo , Catálise , Cromatografia por Troca Iônica , Eletroforese em Gel de Poliacrilamida , Ativação Enzimática/fisiologia , Estabilidade Enzimática/fisiologia , Corantes Fluorescentes , Ponto Isoelétrico , Oxigenases de Função Mista/metabolismo , Dados de Sequência Molecular , Peso Molecular , Complexos Multienzimáticos/química , Complexos Multienzimáticos/isolamento & purificação , Complexos Multienzimáticos/metabolismo , Oxirredução , Fenol/metabolismo , Estrutura Secundária de Proteína , Subunidades Proteicas/isolamento & purificação , Subunidades Proteicas/metabolismo , Análise de Sequência de Proteína , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Temperatura
20.
Yeast ; 20(5): 369-79, 2003 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-12673620

RESUMO

An amine oxidase from the yeast Kluyveromyces marxianus was induced, purified and completely characterized; it was shown to belong to the class of copper-containing amine oxidases (E.C. 1.4.3.6). The enzyme was induced by putrescine and, very strongly, by copper(II); structural-functional characterization of the enzyme was performed, including determination of molecular weight, glycosylation, copper and TPQ content, isoelectric point, K(M) and k(CAT) (with benzylamine as substrate), pH, temperature and ionic strength effect on catalysis, substrate and inhibitor specificity. A 700 bp clone was isolated containing the cDNA that encodes for the C-terminus of the enzyme; the amino acid sequence deduced (the first available for a benzylamine oxidase from yeast) was compared to that of other copper amine oxidases from microorganisms and higher organisms. From the results obtained, the putrescine/benzylamine oxidase from Kluyveromyces marxianus was found to have a good homology with other enzymes of this class from microorganisms, and particularly with AO I from Aspergillus niger. Nonetheless, some features resulted closer to those of animal amine oxidases and histaminases. Some potential biotechnological applications are proposed. The cDNA Accession No. is AJ320485.


Assuntos
Amina Oxidase (contendo Cobre)/isolamento & purificação , Benzilamina Oxidase/isolamento & purificação , Di-Hidroxifenilalanina/análogos & derivados , Kluyveromyces/enzimologia , Amina Oxidase (contendo Cobre)/biossíntese , Amina Oxidase (contendo Cobre)/genética , Amina Oxidase (contendo Cobre)/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Benzilamina Oxidase/genética , Benzilamina Oxidase/metabolismo , Cromatografia DEAE-Celulose , Cobre/farmacologia , Di-Hidroxifenilalanina/química , Espectroscopia de Ressonância de Spin Eletrônica , Eletroforese em Gel de Poliacrilamida , Indução Enzimática/efeitos dos fármacos , Glicosilação , Concentração de Íons de Hidrogênio , Ponto Isoelétrico , Cinética , Kluyveromyces/genética , Dados de Sequência Molecular , Peso Molecular , Putrescina/farmacologia , Homologia de Sequência de Aminoácidos , Ultrafiltração
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