Fluorescence signal of proteins in birch pollen distorted within its native matrix: Identification of the fluorescence suppressor quercetin-3-O-sophoroside.

The properties of biogenic aerosol strongly depend on the particle's proteinaceous compounds. Proteins from primary biological aerosol particles (PBAPs) can cause allergic reactions in the human respiratory system or act as ice and condensation nuclei in clouds. Consequently, these particles have high impact on human health and climate. The detection of biogenic aerosol is commonly performed with fluorescence-based techniques. However, many PBAPs (i.e., pollen of birch, mugwort, or ragweed) show weak or rather low fluorescence signals in the particular protein region (λex ~ 255-280 nm, λem ~ 280-350 nm). We hypothesize that the fluorescence signal of proteins present in birch pollen is being distorted within its native matrix. In this study, we conducted in vitro quenching experiments and employed UV/Vis spectroscopy, capillary zone electrophoresis (CZE), liquid chromatography (LC), electrospray ionization mass spectrometry (ESI-MS), and multistage MS (MS2 and MS3) to target major components in birch pollen washing water (BPWW) possibly quenching the fluorescence activity of proteins and thus explaining the lack of corresponding protein fluorescent signals. We identified quercetin-3-O-sophoroside (Q3OS, MW 626 g mol-1) to be the main UV/Vis absorbing component in BPWW. Our results point out that Q3OS suppresses the fluorescence of proteins in our samples predominantly due to inner filter effects. In general, when applying fluorescence spectroscopy to analyze and detect PBAPs in the laboratory or the atmosphere, it is important to critically scrutinize the obtained spectra.

Increase of Radiative Forcing through Midinfrared Absorption by Stable CO2 Dimers?

We performed matrix-isolation infrared (MI-IR) spectroscopy of carbon dioxide monomers, CO2, and dimers, (CO2)2, trapped in neon and in air. On the basis of vibration configuration interaction (VCI) calculations accounting for mode coupling and anharmonicity, we identify additional infrared-active bands in the MI-IR spectra due to the (CO2)2 dimer. These bands are satellite bands next to the established CO2 monomer bands, which appear in the infrared window of Earth's atmosphere at around 4 and 15 µm. In a systematic carbon dioxide mixing ratio study using neon matrixes, we observe a significant fraction of the dimer at mixing ratios above 300 ppm, with a steep increase up to 1000 ppm. In neon matrix, the dimer increases the IR absorbance by about 15% at 400 ppm compared to the monomer absorbance alone. This suggests a high fraction of the (CO2)2 dimer in our matrix experiments. In atmospheric conditions, such increased absorbance would significantly amplify radiative forcings and, thus, the greenhouse warming. To enable a comparison of our laboratory experiment with various atmospheric conditions (Earth, Mars, Venus), we compute the thermodynamics of the dimerization accordingly. The dimerization is favored at low temperatures and/or high carbon dioxide partial pressures. Thus, we argue that matrix isolation does not trap the gas composition "as is". Instead, the gas is precooled to 40 K, where CO2 dimerizes before being trapped in the matrix, already at very low carbon dioxide partial pressures. In the context of planetary atmospheres, our results improve understanding of the greenhouse effect for planets of rather thick CO2 atmospheres such as Venus, where a significant fraction of the (CO2)2 dimer can be expected. There, the necessity of including the mid-IR absorption by stable (CO2)2 dimers in databases used for modeling radiative forcing, such as HITRAN, arises.

Alpha-Carbonic Acid Revisited: Carbonic Acid Monomethyl Ester as a Solid and its Conformational Isomerism in the Gas Phase.

In this work, earlier studies reporting α-H2 CO3 are revised. The cryo-technique pioneered by Hage, Hallbrucker, and Mayer (HHM) is adapted to supposedly prepare carbonic acid from KHCO3 . In methanolic solution, methylation of the salt is found, which upon acidification transforms to the monomethyl ester of carbonic acid (CAME, HO-CO-OCH3 ). Infrared spectroscopy data both of the solid at 210 K and of the evaporated molecules trapped and isolated in argon matrix at 10 K are presented. The interpretation of the observed bands on the basis of carbonic acid [as suggested originally by HHM in their publications from 1993-1997 and taken over by Winkel et al., J. Am. Chem. Soc. 2007 and Bernard et al., Angew. Chem. Int. Ed. 2011] is inferior compared with the interpretation on the basis of CAME. The assignment relies on isotope substitution experiments, including deuteration of the OH- and CH3 - groups as well as 12 C and 13 C isotope exchange and on variation of the solvents in both preparation steps. The interpretation of the single molecule spectroscopy experiments is aided by a comprehensive calculation of high-level ab initio frequencies for gas-phase molecules and clusters in the harmonic approximation. This analysis provides evidence for the existence of not only single CAME molecules but also CAME dimers and water complexes in the argon matrix. Furthermore, different conformational CAME isomers are identified, where conformational isomerism is triggered in experiments through UV irradiation. In contrast to earlier studies, this analysis allows explanation of almost every single band of the complex spectra in the range between 4000 and 600 cm-1 .

Decomposing anharmonicity and mode-coupling from matrix effects in the IR spectra of matrix-isolated carbon dioxide and methane.

Gas-phase IR spectra of carbon dioxide and methane are nowadays well understood, as a consequence of their pivotal roles in atmospheric- and astrochemistry. However, once those molecules are trapped in noble gas matrices, their spectroscopic properties become difficult to conceptualize. Still, such spectra provide valuable insights into the vibrational structure. In this study, we combine new matrix-isolation infrared (MI-IR) spectra at 6 K in argon and neon with in vacuo anharmonic spectra computed by vibrational self-consistent field (VSCF) and vibrational configuration interaction (VCI). The aim is to separate anharmonicity from matrix effects in the mid-infrared spectra of 12C16O2, 12CH4, and 12CD4. The accurate description of anharmonic potential energy surfaces including mode-coupling allows to reproduce gas-phase data with deviations of below 3 cm-1. Consequently, the remaining difference between MI-IR and VSCF/VCI can be attributed to matrix effects. Frequency shifts and splitting patterns turn out to be unsystematic and dependent on the particular combination of analyte and noble gas. While in the case of neon matrices these effects are small, they are pronounced in xenon, krypton, and argon matrices. Our strategy allows us to suggest that methane rotates in neon matrices - in contrast to previous reports.

On the synergy of matrix-isolation infrared spectroscopy and vibrational configuration interaction computations.

The key feature of matrix-isolation infrared (MI-IR) spectroscopy is the isolation of single guest molecules in a host system at cryogenic conditions. The matrix mostly hinders rotation of the guest molecule, providing access to pure vibrational features. Vibrational self-consistent field (VSCF) and configuration interaction computations (VCI) on ab initio multimode potential energy surfaces (PES) give rise to anharmonic vibrational spectra. In a single-sourced combination of these experimental and computational approaches, we have established an iterative spectroscopic characterization procedure. The present article reviews the scope of this procedure by highlighting the strengths and limitations based on the examples of water, carbon dioxide, methane, methanol, and fluoroethane. An assessment of setups for the construction of the multimode PES on the example of methanol demonstrates that CCSD(T)-F12 level of theory is preferable to compute (a) accurate vibrational frequencies and (b) equilibrium or vibrationally averaged structural parameters. Our procedure has allowed us to uniquely assign unknown or disputed bands and enabled us to clarify problematic spectral regions that are crowded with combination bands and overtones. Besides spectroscopic assignment, the excellent agreement between theory and experiment paves the way to tackle questions of rather fundamental nature as to whether or not matrix effects are systematic, and it shows the limits of conventional notations used by spectroscopists.

Toward Elimination of Discrepancies between Theory and Experiment: Anharmonic Rotational-Vibrational Spectrum of Water in Solid Noble Gas Matrices.

Rotational-vibrational spectroscopy of water in solid noble gas matrices has been studied for many decades. Despite that, discrepancies persist in the literature about the assignment of specific bands. We tackle the involved rotational-vibrational spectrum of the water isotopologues H216O, HD16O, and D216O with an unprecedented combination of experimental high-resolution matrix isolation infrared (MI-IR) spectroscopy and computational anharmonic vibrational spectroscopy by vibrational configuration interaction (VCI) on high-level ab initio potential energy surfaces. With VCI, the average deviation to gas-phase experiments is reduced from >100 to ≈1 cm-1 when compared to harmonic vibrational spectra. Discrepancies between MI-IR and VCI spectra are identified as matrix effects rather than missing anharmonicity in the theoretical approach. Matrix effects are small in Ne (≈1.5 cm-1) and a bit larger in Ar (≈10 cm-1). Controversial assignments in Ne MI-IR spectra are resolved, for example, concerning the ν3 triad in HDO. We identify new transitions, for example, the ν2 101 ← 110 transition in D2O and H2O or the ν3 000 ← 101 transition in D2O, and reassign bands, for example, the band at 3718.9 cm-1 that is newly assigned as the 110 ← 111 transition. The identification and solution of discrepancies for a well-studied benchmark system such as water prove the importance of an iterative and one-hand combination of theory and experiment in the field of high-resolution infrared spectroscopy of single molecules. As the computational costs involved in the VCI approach are reasonably low, such combined experimental/theoretical studies can be extended to molecules larger than triatomics.

Does the emulsification procedure influence freezing and thawing of aqueous droplets?

Here we investigate the freezing and thawing properties of aqueous solutions in oil emulsions, with a particular focus on investigating the influence of the oil and surfactant and the stirring time of the emulsion. Specifically, we employ optical cryomicroscopy in combination with differential scanning calorimetry to study the phase behavior of emulsified 25 wt. % ammonium sulfate droplets in the temperature range down to 93 K. We conclude that the nucleation temperature does not vary with oil-surfactant combination, that is, homogeneous nucleation is probed. However, incomplete emulsification and non-unimodal size distribution of dispersed droplets very often result in heterogeneous nucleation. This in turn affects the distribution of freeze-concentrated solution and the concentration of the solid ice/ammonium sulfate mixture and, thus, the phase behavior at sub-freezing temperatures. For instance, the formation of letovicite at 183 K critically depends on whether the droplets have frozen heterogeneously or homogeneously. Hence, the emulsification technique can be a very strong technique, but it must be ensured that emulsification is complete, i.e., a unimodal size distribution of droplets near 15 µm has been reached. Furthermore, phase separation within the matrix itself or uptake of water from the air may impede the experiments.

Metastable Nitric Acid Trihydrate in Ice Clouds.

The composition of high-altitude ice clouds is still a matter of intense discussion. The constituents in question are ice and nitric acid hydrates, but the exact phase composition of clouds and its formation mechanisms are still unknown. In this work, conclusive evidence for a long-predicted phase, alpha-nitric acid trihydrate (alpha-NAT), is presented. This phase was characterized by a combination of X-ray and neutron diffraction experiments, allowing a convincing structure solution. Furthermore, vibrational spectra (infrared and inelastic neutron scattering) were recorded and compared with theoretical calculations. A strong interaction between water ice and alpha-NAT was found, which explains the experimental spectra and the phase-transition kinetics. On the basis of these results, we propose a new three-step mechanism for NAT formation in high-altitude ice clouds.

Identification of ice nucleation active sites on feldspar dust particles.

Mineral dusts originating from Earth's crust are known to be important atmospheric ice nuclei. In agreement with earlier studies, feldspar was found as the most active of the tested natural mineral dusts. Here we investigated in closer detail the reasons for its activity and the difference in the activity of the different feldspars. Conclusions are drawn from scanning electron microscopy, X-ray powder diffraction, infrared spectroscopy, and oil-immersion freezing experiments. K-feldspar showed by far the highest ice nucleation activity. Finally, we give a potential explanation of this effect, finding alkali-metal ions having different hydration shells and thus an influence on the ice nucleation activity of feldspar surfaces.

Self-assembly at air/water interfaces and carbohydrate binding properties of the small secreted protein EPL1 from the fungus Trichoderma atroviride.

The protein EPL1 from the fungus Trichoderma atroviride belongs to the cerato-platanin protein family. These proteins occur only in filamentous fungi and are associated with the induction of defense responses in plants and allergic reactions in humans. However, fungi with other lifestyles also express cerato-platanin proteins, and the primary function of this protein family has not yet been elucidated. In this study, we investigated the biochemical properties of the cerato-platanin protein EPL1 from T. atroviride. Our results showed that EPL1 readily self-assembles at air/water interfaces and forms protein layers that can be redissolved in water. These properties are reminiscent of hydrophobins, which are amphiphilic fungal proteins that accumulate at interfaces. Atomic force microscopy imaging showed that EPL1 assembles into irregular meshwork-like substructures. Furthermore, surface activity measurements with EPL1 revealed that, in contrast to hydrophobins, EPL1 increases the polarity of aqueous solutions and surfaces. In addition, EPL1 was found to bind to various forms of polymeric chitin. The T. atroviride genome contains three epl genes. epl1 was predominantly expressed during hyphal growth, whereas epl2 was mainly expressed during spore formation, suggesting that the respective proteins are involved in different biological processes. For epl3, no gene expression was detected under most growth conditions. Single and double gene knock-out strains of epl1 and epl2 did not reveal a detectable phenotype, showing that these proteins are not essential for fungal growth and development despite their abundant expression.

A fluorescence approach for an online measurement technique of atmospheric microplastics.

Microplastic particles in the atmosphere are regularly detected in urban areas as well as in very remote locations. Yet the sources, chemical transformation, transport, and abundance of airborne microplastics still remain largely unexplained. Therefore, their impact on health, weather and climate related processes lacks comprehensive understanding. Single particle detection presents a substantial challenge due to its time-consuming process and is conducted solely offline. To get more information about the distribution, fluxes and sources of microplastics in the atmosphere, a reliable and fast online measurement technique is of utmost importance. Here we demonstrate the use of the autofluorescence of microplastic particles for their online detection with a high sensitivity towards different widely used polymers. We deploy online, single particle fluorescence spectroscopy with a Wideband Integrated Bioaerosol Sensor WIBS 5/NEO (Droplet Measurement Technologies, USA), which enables single particle fluorescence measurements at two excitation wavelengths (280 nm and 370 nm) and in two emission windows (310-400 nm and 420-650 nm). We investigated shredded (<100 µm) everyday plastic products (drinking bottles and yogurt cups) and pure powders of polyethylene terephthalate (PET), polyethylene and polypropylene. For the broad range of typical plastic products analyzed, we detected fluorescence on a single particle level using the WIBS. The online detection can identify particles smaller than 2 µm. In the case of microplastic particles from a PET bottle, 1.2 µm sized particles can be detected with 95% efficiency. Comparison with biological aerosols reveals that microplastics can be distinguished from two abundant pollen species and investigation of the complete fluorescence excitation emission maps of all samples shows that online identification of microplastics might be possible with fluorescence techniques if multiple channels are available.

Matrix isolation studies of carbonic acid--the vapor phase above the ß-polymorph.

Twenty years ago two different polymorphs of carbonic acid, α- and ß-H2CO3, were isolated as thin, crystalline films. They were characterized by infrared and, of late, by Raman spectroscopy. Determination of the crystal structure of these two polymorphs, using cryopowder and thin film X-ray diffraction techniques, has failed so far. Recently, we succeeded in sublimating α-H2CO3 and trapping the vapor phase in a noble gas matrix, which was analyzed by infrared spectroscopy. In the same way we have now investigated the ß-polymorph. Unlike α-H2CO3, ß-H2CO3 was regarded to decompose upon sublimation. Still, we have succeeded in isolation of undecomposed carbonic acid in the matrix and recondensation after removal of the matrix here. This possibility of sublimation and recondensation cycles of ß-H2CO3 adds a new aspect to the chemistry of carbonic acid in astrophysical environments, especially because there is a direct way of ß-H2CO3 formation in space, but none for α-H2CO3. Assignments of the FTIR spectra of the isolated molecules unambiguously reveal two different carbonic acid monomer conformers (C(2v) and C(s)). In contrast to the earlier study on α-H2CO3, we do not find evidence for centrosymmetric (C(2h)) carbonic acid dimers here. This suggests that two monomers are entropically favored at the sublimation temperature of 250 K for ß-H2CO3, whereas they are not at the sublimation temperature of 210 K for α-H2CO3.

Runaway electrification of friable self-replicating granular matter.

We establish that the nonlinear dynamics of collisions between particles favors the charging of an insulating, friable, self-replicating granular material that undergoes nucleation, growth, and fission processes; we demonstrate with a minimal dynamical model that secondary nucleation produces a positive feedback in an electrification mechanism that leads to runaway charging. We discuss ice as an example of such a self-replicating granular material: We confirm with laboratory experiments in which we grow ice from the vapor phase in situ within an environmental scanning electron microscope that charging causes fast-growing and easily breakable palmlike structures to form, which when broken off may form secondary nuclei. We propose that thunderstorms, both terrestrial and on other planets, and lightning in the solar nebula are instances of such runaway charging arising from this nonlinear dynamics in self-replicating granular matter.

Diversity and ice nucleation activity of Pseudomonas syringae in drone-based water samples from eight lakes in Austria.

Bacteria from the Pseudomonas syringae complex (comprised of at least 15 recognized species and more than 60 different pathovars of P. syringae sensu stricto) have been cultured from clouds, rain, snow, streams, rivers, and lakes. Some strains of P. syringae express an ice nucleation protein (hereafter referred to as ice+) that catalyzes the heterogeneous freezing of water. Though P. syringae has been sampled intensively from freshwater sources in the U.S. and France, little is known about the genetic diversity and ice nucleation activity of P. syringae in other parts of the world. We investigated the haplotype diversity and ice nucleation activity at -8 °C (ice+) of strains of P. syringae from water samples collected with drones in eight freshwater lakes in Austria. A phylogenetic analysis of citrate synthase (cts) sequences from 271 strains of bacteria isolated from a semi-selective medium for Pseudomonas revealed that 69% (188/271) belonged to the P. syringae complex and represented 32 haplotypes in phylogroups 1, 2, 7, 9, 10, 13, 14 and 15. Strains within the P. syringae complex were identified in all eight lakes, and seven lakes contained ice+ strains. Partial 16S rDNA sequences were analyzed from a total of 492 pure cultures of bacteria isolated from non-selective medium. Nearly half (43.5%; 214/492) were associated with the genus Pseudomonas. Five of the lakes (ALT, GRU, GOS, GOL, and WOR) were all distinguished by high levels of Pseudomanas (p ≤ 0.001). HIN, the highest elevation lake, had the highest percentage of ice+ strains. Our work highlights the potential for uncovering new haplotypes of P. syringae in aquatic habitats, and the use of robotic technologies to sample and characterize microbial life in remote settings.

High resolution nanoscale chemical analysis of bitumen surface microstructures.

Surface microstructures of bitumen are key sites in atmospheric photo-oxidation leading to changes in the mechanical properties and finally resulting in cracking and rutting of the material. Investigations at the nanoscale remain challenging. Conventional combination of optical microscopy and spectroscopy cannot resolve the submicrostructures due to the Abbe restriction. For the first time, we report here respective surface domains, namely catana, peri and para phases, correlated to distinct molecules using combinations of atomic force microscopy with infrared spectroscopy and with correlative time of flight-secondary ion mass spectrometry. Chemical heterogeneities on the surface lead to selective oxidation due to their varying susceptibility to photo-oxidation. It was found, that highly oxidized compounds, are preferentially situated in the para phase, which are mainly asphaltenes, emphasising their high oxidizability. This is an impressive example how chemical visualization allows elucidation of the submicrostructures and explains their response to reactive oxygen species from the atmosphere.

Seasonal ice nucleation activity of water samples from alpine rivers and lakes in Obergurgl, Austria.

Heterogeneous ice nucleation plays an important role in many environmental processes such as ice cloud formation, freezing of water bodies or biological freeze protection in the cryosphere. New information is needed about the seasonal availability, nature, and activity of ice nucleating particles (INPs) in alpine environments. These INPs trigger the phase transition from liquid water to solid ice at elevated subzero temperatures. We collected water samples from a series of alpine rivers and lakes (two valleys and their rivers, an artificial pond, and a natural lake system) in Obergurgl, Austria in June 2016, July 2016, November 2016, and May 2017. Each alpine river and lake was sampled multiple times across different seasons, depending on site access during different times of the year. Water samples were filtered through a 0.22 µm membrane filter to separate microbial INPs from the water, and both fractions were analyzed for ice nucleation activity (INA) by an emulsion freezing method. Microorganisms were cultured from the filters, and the cultures then analyzed for INA. Portions of the filtered samples were concentrated by lyophilization to observe potential enhancement of INA. Two sediment samples were taken as reference points for inorganic INPs. Sub-micron INPs were observed in all of the alpine water sources studied, and a seasonal shift to a higher fraction of microbial ice nucleators cultured on selective media was observed during the winter collections. Particles larger than 0.22 µm showed INA, and microbes were cultured from this fraction. Results from 60 samples gave evidence of a seasonal change in INA, presence of submicrometer INPs, and show the abundance of culturable microorganisms, with late spring and early summer showing the most active biological INPs. With additional future research on this topic ski resorts could make use of such knowledge of geographical and seasonal trends of microbial INPs in freshwater habitats in order to improve the production of artificial snow.

Effect of Thermal and Oxidative Aging on Asphalt Binders Rheology and Chemical Composition.

Aging of asphalt binders is one of the main causes of its hardening, which negatively affects the cracking and fatigue resistance of asphalt binders. Understanding asphalt aging is crucial to improve the durability of asphalt pavements. In this regard, this study aims at understanding and differentiating the effect of temperature and oxygen uptake on the aging mechanisms of unmodified asphalt binders. For that, four laboratory aging procedures were employed. The two standardized procedures, rolling thin-film oven test (RTFOT) and pressure aging vessel (PAV), were considered to simulate the short-term and long-term aging of the asphalt binders, respectively. In addition, two thin-film aging test procedures, the nitrogen atmosphere oven aging test (NAAT) and ambient atmosphere oven aging test (OAAT) were employed to assess the effect of thermal and oxidative aging on unmodified asphalt binder properties. The NAAT procedure is based on the principle that the inert gas minimizes the oxidative aging. The rheological and chemical characterization showed that the high temperatures considered during the NAAT procedure did not change the properties of the unmodified asphalt binders. Therefore, it can be hypothesized that no significant thermal and oxidative aging was observed during NAAT aging procedure for the considered binders and that oxidative aging is the main cause for the hardening.

Collection of soot particles into aqueous suspension using a particle-into-liquid sampler.

Steam collection devices collecting aerosol particles into liquid samples are frequently used to analyze water-soluble particulate material. The fate of water-insoluble components is often neglected. In this work, we show that fresh soot particles can be suspended into pure water using a steam collection device, the particle-into-liquid sampler (PILS, Weber et al. 2001). The overall collection efficiency of freshly generated soot particles was found to be on the order of 20%. This shows that, depending on the analytic technique employed, the presence of insoluble, and/or hydrophobic particles in liquid samples from steam collection cannot be neglected. Copyright © 2018 The Author(s). Published with license by Taylor & Francis Group, LLC.

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria.

Artificial snow production is a crucial part of modern skiing resorts in Austria and globally, and will develop even more so with changing precipitation patterns and a warming climate trend. Producing artificial snow requires major investments in energy, water, infrastructure and manpower for skiing resorts. In addition to appropriate meteorological conditions, the efficiency of artificial snow production depends on heterogeneous ice-nucleation, which can occur at temperatures as high as -2°C when induced by specific bacterial ice nucleating particles (INPs). We aimed to investigate the presence, source and ice nucleating properties of these particles in the water cycle of an alpine ski resort in Obergurgl, Tyrol, Austria. We sampled artificial snow, river water, water pumped from a storage pond and compared it to samples collected from fresh natural snow and aged piste snow from the area. Particles from each sampled system were characterized in order to determine their transport mechanisms at a ski resort. We applied a physical droplet freezing assay [DRoplet Ice Nuclei Counter Zurich (DRINCZ)] to heated and unheated samples to characterize the biological and non-biological component of IN-activity. Bacterial abundance and community structure of the samples was obtained using quantitative PCR and Illumina Mi-Seq Amplicon Sequencing, and their chemical properties were determined by liquid ion-chromatography, energy dispersive X-ray spectroscopy (EDX) and scanning electron microscopy (SEM). The results show the flow of biological and inorganic material from the river to the slopes, an uptake of new microorganisms through the air and the piping, and possible proliferation or introduction of ice nucleation active biological particles in aged piste snow. Natural snow, as the first stage in this system, had the lowest amount of ice nucleation active particles and the least amount of biological and mineral particles in general, yet shares some microbial characteristics with fresh artificial snow.