Diving into freshwater microbial metabolites: Pioneering research and future prospects.

In practically every facet of life, especially nutrition, agriculture, and healthcare, microorganisms offer a prospective origin for abundant natural substances and products. Among these microorganisms, bacteria also possess the capability to rapidly acclimate to diverse environments, utilize varied resources, and effectively respond to environmental fluctuations, including those influenced by human activities like pollution and climate change. The ever-changing environment of freshwater bodies influences bacterial communities, offering opportunities for improving health and environmental conservation that remain unexplored. Herein, the study discusses the bacterial taxa along with specialised metabolites with antioxidant, antibacterial, and anticancer activity that have been identified from freshwater environments, thus achieving Sustainable Development Goals addressing health and wellbeing (SDG-3), economic growth (SDG-8) along with industrial development (SDG-9). The present review is intended as a compendium for research teams working in the fields of medicinal chemistry, organic chemistry, clinical research, and natural product chemistry.

Magnetic porous Ag2O/Chitin nanostructure adsorbent for eco-friendly effective disposing azo dyes.

Water treatment is as much important as it is to satisfying 11 worldwide sustainable development goals out of 17. The removal of Azo is much important as they are toxic and their existence in water, air and food can easily affect humans by triggering allergies, forming tumours etc. Azo contained Dyes Production was banned in many countries. This research aims to synthesize composite Nanorods and Nanospheres and characterize and test to remove Azo dyes from the wastewater. This research used a previously reported method to rapidly synthesize chitin magnetite nanocomposites (ChM) by co-precipitation while irradiating with ultrasound (US). Detailed structural characterization of ChM revealed a crystalline phase analogous to magnetite and spherical morphologies; extending the reaction time to 8 min yielded a "nanorod" type morphology. Both the morphologies displayed a nanoscale limit with particles averaging between 5 and 30 nm in size, resulting the superparamagnetic performance and saturation magnetization values between 45 and 58 emu/g. The nitrogen adsorption-desorption isotherms showed that the surface modification of ChMs resulted in a rise of specific surface area and pore size. Anionic azo dyes (methyl orange (MO) and reactive black 5 (RB5)) adsorption on the surface of nanocomposites was also demonstrated to be pH-dependent, with the reaction favoured for surface-modified samples at pH 4 and unmodified samples at pH 8. Adsorption capacity studies showed that molecule size effect and electrostatic attraction were two distinct adsorption processes for unmodified and modified ChMs. Chitin Magnetite nanoparticles appear to be a substitute for traditional anionic dye adsorbents. Additionally, the two key materials sources, chitin, and magnetite are inexpensive and easily accessible.

Everyday Abilities Scale for India in Screening for Poststroke Dementia Among Young Stroke Survivors.

INTRODUCTION: Cognitive dysfunction after stroke is an important concern. We explored the utility of everyday abilities scale for India (EASI) for screening for dementia among young stroke survivors. METHODS: We interviewed 150 young stroke survivors and caregivers. Vascular dementia was diagnosed according to American Heart Association-American Stroke Association (ASA-AHA) criteria. EASI was administered to all caregivers. Receiver operating characteristic curve analysis was used to determine the area under the curve and optimum cut-points for EASI for the identification of dementia. RESULTS: Median EASI scores among subjects with dementia (n=35; 23.3%) was 2 (interquartile range: 0-4) and significantly different from those without (median: 0; interquartile range: 0-1; P<0.001). The area under the curve was 0.768 (95% confidence interval: 0.674-0.863), and at the optimum cut-point of 2 on EASI, a sensitivity of 60% and specificity of 91.3% was achieved for the identification of dementia. CONCLUSION: EASI appears to be a promising tool to screen for dementia among young stroke survivors.

Microbial Biodeterioration of Cultural Heritage: Events, Colonization, and Analyses.

Geochemical cycles result in the chemical, physical, and mineralogical modification of rocks, eventually leading to formation of soil. However, when the stones and rocks are a part of historic buildings and monuments, the effects are deleterious. In addition, microorganisms also colonize these monuments over a period of time, resulting in formation of biofilms; their metabolites lead to physical weakening and discoloration of stone eventually. This process, known as biodeterioration, leads to a significant loss of cultural heritage. For formulating effective conservation strategies to prevent biodeterioration and restore monuments, it is important to know which microorganisms are colonizing the substrate and the different energy sources they consume to sustain themselves. With this view in scope, this review focuses on studies that have attempted to understand the process of biodeterioration, the mechanisms by which they colonize and affect the monuments, the techniques used for assessment of biodeterioration, and conservation strategies that aim to preserve the original integrity of the monuments. This review also includes the "omics" technologies that have started playing a large role in elucidating the nature of microorganisms, and how they can play a role in hastening the formulation of effective conservation strategies.

Saccharothrix tharensis sp. nov., an actinobacterium isolated from the Thar Desert, India.

The taxonomic provenance of a filamentous actinobacterial strain isolated from a desert soil was established using a polyphasic approach. The strain has chemotaxonomic and morphological properties consistent with its classification in the genus Saccharothrix. It forms a distinct branch in the Saccharothrix 16S rRNA gene tree, related to the type strain of Saccharothrix saharensis (96.7%) but was distinguished readily from it using a combination of phenotypic properties. The genotypic and phenotypic data show that the strain represents a novel species in the genus Saccharothrix, for which the name Saccharothrix tharensis sp. nov. is proposed with the type strain TD-093T (= KCTC 39724T = MCC 2832T).

Saccharothrix sp. TD-093 from the Thar Desert, India: Metabolite Fingerprinting of Antimicrobial Compounds and in silico Analysis.

During a screening program for actinomycetes from underexplored and arid Thar Desert (India), TD-093 was isolated. The isolate was characterized based on 16S rDNA sequencing. Aqueous and organic solvent extracts of culture supernatant were investigated for antimicrobial activity. Bioactive fractions, after column chromatography separation, were subjected to GC-MS analysis. Based on 16S rDNA sequence result, isolate TD-093 showed nearest match to Saccharothrix (96%) and is a potential new species. Aqueous and organic solvent extracts showed antimicrobial activity against Staphylococcus epidermidis, Micrococcus luteus, Pseudomonas fluorescens, and Escherichia coli as well as clinical isolates (Pseudomonas aeruginosa, Klebsiella pneumoniae, Escherichia coli, and Acinetobacter baumannii). GC-MS metabolite fingerprinting resulted in 32 compounds belonging to fatty acid, hydrocarbon, alcohol, aldehyde, amide, ester, ketone, disulfide, and nitrile chemical groups. Combination analyses of the compounds based on retention time, similarity index, mass ion spectra, and retention indices-observed and calculated, showed that many of the compounds could be presumed to be novel. Further, four compounds showed retention indices that have not been documented in databases. In silico analysis (using software Prediction of Activity of Spectra for Substances) of compounds predicted by GC-MS data showed that 21 compounds had potential antibacterial activity.

Phenylketonuria Scientific Review Conference: state of the science and future research needs.

New developments in the treatment and management of phenylketonuria (PKU) as well as advances in molecular testing have emerged since the National Institutes of Health 2000 PKU Consensus Statement was released. An NIH State-of-the-Science Conference was convened in 2012 to address new findings, particularly the use of the medication sapropterin to treat some individuals with PKU, and to develop a research agenda. Prior to the 2012 conference, five working groups of experts and public members met over a 1-year period. The working groups addressed the following: long-term outcomes and management across the lifespan; PKU and pregnancy; diet control and management; pharmacologic interventions; and molecular testing, new technologies, and epidemiologic considerations. In a parallel and independent activity, an Evidence-based Practice Center supported by the Agency for Healthcare Research and Quality conducted a systematic review of adjuvant treatments for PKU; its conclusions were presented at the conference. The conference included the findings of the working groups, panel discussions from industry and international perspectives, and presentations on topics such as emerging treatments for PKU, transitioning to adult care, and the U.S. Food and Drug Administration regulatory perspective. Over 85 experts participated in the conference through information gathering and/or as presenters during the conference, and they reached several important conclusions. The most serious neurological impairments in PKU are preventable with current dietary treatment approaches. However, a variety of more subtle physical, cognitive, and behavioral consequences of even well-controlled PKU are now recognized. The best outcomes in maternal PKU occur when blood phenylalanine (Phe) concentrations are maintained between 120 and 360 µmol/L before and during pregnancy. The dietary management treatment goal for individuals with PKU is a blood Phe concentration between 120 and 360 µmol/L. The use of genotype information in the newborn period may yield valuable insights about the severity of the condition for infants diagnosed before maximal Phe levels are achieved. While emerging and established genotype-phenotype correlations may transform our understanding of PKU, establishing correlations with intellectual outcomes is more challenging. Regarding the use of sapropterin in PKU, there are significant gaps in predicting response to treatment; at least half of those with PKU will have either minimal or no response. A coordinated approach to PKU treatment improves long-term outcomes for those with PKU and facilitates the conduct of research to improve diagnosis and treatment. New drugs that are safe, efficacious, and impact a larger proportion of individuals with PKU are needed. However, it is imperative that treatment guidelines and the decision processes for determining access to treatments be tied to a solid evidence base with rigorous standards for robust and consistent data collection. The process that preceded the PKU State-of-the-Science Conference, the conference itself, and the identification of a research agenda have facilitated the development of clinical practice guidelines by professional organizations and serve as a model for other inborn errors of metabolism.

Technical note: optimization of lactose quantification based on coupled enzymatic reactions.

A colorimetric microplate-adapted lactose assay was developed to quantify lactose in dairy products. The assay was based on the coupled enzymatic reaction of ß-galactosidase-glucose oxidase-horseradish peroxidase using Amplex red as detection probe. The assay showed good linearity in the range of 0.1 to 0.5mmol of lactose/L, with a limit of detection of 0.0433mmol/L and a limit of quantification of 0.1313mmol/L. The lactose assay at optimized conditions (5 U of ß-galactosidase/mL, 5 U of glucose oxidase/mL, 1 U of horseradish peroxidase/mL, and 100µmol of Amplex red/L for 1h at 37°C in the dark) showed good correlation with a commercial lactose enzymatic kit with intraassay variation below 10% and interassay variations below 7.6%. The developed lactose microplate assay can be adopted as routine analysis for lactose determination in dairy products due to its relatively low cost compared with a commercial kit, relatively short reaction time, and high sensitivity and reproducibility.

Ameliorating activity of ginger (Zingiber officinale) extract against lead induced renal toxicity in male rats.

Lead poisoning has been known to be associated with structural and functional abnormalities of multiple organ systems of human body. The aim of this investigation was to study the renal protective effects of ginger (Zingiber officinale) extract in lead induced toxicity rats. In this study renal glutathione (GSH) level, glutathione peroxidase (GPX), glutathione-s-transferase (GST), and catalase enzymes were measured in lead nitrate (300 mg/kg BW), and lead nitrate plus ginger extract (150 mg/kg BW) treated rat groups for 1 week and 3 weeks respectively. The glutathione level and GSH dependent antioxidant enzymes such as glutathione peroxidase, glutathione-s-transferase, and catalase significantly (P < 0.05) increased in ginger extract treated rat groups. In addition, histological studies showed lesser renal changes in lead plus ginger extract treated rat groups than that of lead alone treated rat groups. These results indicate that ginger extract alleviated lead toxic effects by enhancing the levels of glutathione, glutathione peroxidase, glutathione-s-transferase and catalase.

GC-MS-based metabolite fingerprinting reveals the presence of novel anticancer compounds in the microcolonial fungus Aureobasidium sp. TD-062 from the under-explored Thar Desert.

Aureobasidium sp., strain TD-062, a micro colonial black yeast, was obtained as part of a screening program from the Thar Desert of India, which has been inadequately explored for novel microorganisms/bioactive metabolites. The anticancer activity of aqueous and organic solvent extracts of culture supernatant of TD-062 was investigated against A-375 myeloma and MCF-7 breast cancer cell lines. Following column chromatography, bioactive fractions were subjected to GC-MS analysis in two cycles. The GC-MS metabolite fingerprinting revealed 20 compounds belonging to various chemical groups. Further, based on observed and calculated mass ion spectra, retention time, and retention indices, many compounds could be considered novel. The second purification cycle resulted in three compounds- ATD-1, ATD-2 and ATD-3 with different calculated retention indices from that of the nearest matching compounds, squalene and tocopherol. In silico prediction study of their ADMET profiles, suggests that these new compounds have a suitable contour for use as safe anticancer drugs, without the toxicity normally associated with anticancer compounds.

Assessing Recent Technologies for Addressing Microplastic Pollution and Pushing the Case of Bioremediation as an Attractive Approach.

Microplastics are emerging sources of environmental pollutants that are increasingly of concern because of their harmful impacts on aquatic life and thereby humans. Their accumulation in the environment is in direct proportion to global plastic production; their being nondegradable, recalcitrant and of a persistent nature creates an urgent need to address this issue on a global scale. Recent reports have demonstrated the presence of microplastics in marine life, and directly becoming a part of the food chain when seafood is ingested by humans. The repercussions of these studies point to an even larger scale presence of microplastics across varied habitats, which are yet to be sampled. Bioremediation, using various microorganisms such as bacteria, algae and fungi, alone or as consortia or in biofilm form can be used as an effective remediation tool. Genetically modified microorganisms for focused removal of microplastics and metagenomics studies, providing taxonomic details of uncultured organisms, are also expected to provide an additional catalogue of technologies in this field. This review offers a comprehensive overview of microplastic sources, existing technologies for treating microplastics and an in-depth analysis of bioremediation mechanisms, its components, and the results from various studies which provide sufficient clues as to the directions to be chosen to address microplastics pollution and can facilitate and instruct researchers to further investigate the more practical approaches and create new and innovative strategies for advanced remediation of microplastic in the future.

Target SARS-CoV-2: theoretical exploration on clinical suitability of certain drugs.

We propose a unique theoretical methodology because of the global high priority rating to search for the repurposed drugs that outfit clinical suitability to SARS-CoV-2. The approach is based on the exploration of structural analysis, computation of biothermodynamics, interactions and the prediction of entropy sign successively via molecular dynamics. We tested this methodology for Favipiravir/Dolutegravir drugs on the apo form of SARS-CoV-2 main protease. This theoretical exploration not only suggested the presence of strong interactions between (SARS-CoV-2 + Favipiravir/Dolutegravir) but also emphasized the clinical suitability of Favipiravir over Dolutegravir to treat SARS-CoV-2 main protease. The supremacy of Favipiravir over Doultegravir is well supported by the results of global clinical trials on SARS-CoV-2 infection. Thus, this work will pave the way for incremental advancement towards future design and development of more specific inhibitors to treat SARS-CoV-2 infection in humans.Communicated by Ramaswamy H. Sarma.

Redefining bio medical waste management during COVID- 19 in india: A way forward.

India is ranked 120 among 165 nations with respect to sustainable development and critically suffers from insufficient waste treatment provisions and amenities. And the abrupt occurrence of the COVID-19 virus has aggravated the issue of managing of medical waste in India, manifolds. As a result, the safe disposal of a huge volume of hazardous medical waste has become a top priority. This conceptual study evaluates India's management of medical waste during the COVID-19 pandemic. Additionally, this article aims to highlight the inadequacies in India's implementation of the BMW 2016 standards by a synthesis of multiple agency reports (government and non-government) and data obtained directly from the Central Pollution Control Board (CPCB). The findings indicate that India is well behind in terms of COVID-19 waste management and requires comprehensive monitoring and implementation systems to enable the achievement of SDGs related to environmental health.

Role of phosphate-buffered saline on push-out bond strength of MTA Flow™ and Biodentine™ after acid challenge: An in vitro study.

Context: The physical and chemical properties of root repair materials are adversely affected when placed in areas of inflammation with acidic pH. Aim: To evaluate the role of phosphate-buffered saline (PBS- pH 7.4) on push-out bond strength (POBS) of MTA flow and Biodentine (BD) after acid challenge with butyric acid buffered solution (BABS- pH 5.4). Subjects and Methods: Eighty mid-root dentin slices (2 mm thick; 1.3 mm lumen diameter) were prepared and were divided into two groups (n = 40) based on the type of material used for filling lumen: Group 1-MTA Flow and Group 2-BD. Each group was again divided into four subgroups (n = 10) based on the duration of exposure to storage media: (a) 3 days in PBS, (b) 3 days in BABS, (c) 3 days in BABS followed by 30 days in PBS, and (d) 33 days in PBS. POBS was then measured using the universal strength testing machine. Statistical Analysis Used: Statistical analysis was performed with one-way analysis of variance and post hoc test using SPSS software version 23.0. Results: Group 1b and 2b showed significantly lower bond strength values. No significant difference was observed between Group 1b and Group 1c (P > 0.05), whereas highly significant POBS values were observed between Group 2b and Group 2c (P = 0.000). Among all the tested groups, Group 2d showed the highest POBS values. Conclusion: On storage in PBS after acid challenge, BD attained the highest POBS values while no significant difference was observed in MTA Flow.

Ionic-liquid induced changes in cellulose structure associated with enhanced biomass hydrolysis.

The effects of varying ionic liquid pretreatment parameters on various sources of lignocellulosic biomass have been studied using X-ray powder diffraction, X-ray fiber diffraction, and compositional analysis. Comparative enzymatic hydrolysis and sugar analysis were used to relate the observed changes in cellulose structure to biomass digestibility. In this study, the factor most clearly associated with enhanced biomass hydrolysis is the conversion of cellulose fibers from the cellulose I to the cellulose II crystal phase.

Alkaliphilic bacteria: applications in industrial biotechnology.

Alkaliphiles are interesting groups of extremophilic organisms that thrive at pH of 9.0 and above. Many of their products, in particular enzymes, have found widespread applications in industry, primarily in the detergent and laundry industries. While the enzymes have been a runaway success from the industrial point of view, many more products have been reported from alkaliphiles such as antibiotics and carotenoids. Less known are their potential for degradation of xenobiotics. They also play a key role in biogeocycling of important inorganic compounds. This review provides an insight into the huge diversity of alkaliphilic bacteria, the varied products obtained from them, and the need for further investigations on these interesting bacteria.

Shear Strength of Hybrid Fibre-Reinforced Ternary Blend Geopolymer Concrete Beams under Flexure.

The need to promote sustainable civil infrastructure is one of the most important concerns in the construction industry. Geopolymer composites are one of the promising eco-friendly materials for the development of low carbon concrete. The main objective of this experimental investigation is to study the effect of hybrid fibres on the shear strength of flexural members made with ternary blend geopolymer concrete (TGPC). A total number of 27 reinforced concrete beams of size 100 mm × 150 mm × 1200 mm were cast and tested for shear. M55 grade of concrete was considered in this study. Crimped steel fibres and polypropylene fibres with an aspect ratio of 66 and 300, respectively, were used in this work. The main variables considered in this investigation involve two volume proportions of steel fibres, viz., 0.5% and 1% as well as four volume proportions of polypropylene fibres viz., 0.1%, 0.15%, 0.2% and 0.25%. The hybrid fibre-reinforced ternary blend geopolymer concrete (HTGPC) beams were compared with TGPC beams without fibres. From the test results, it was clear that incorporating hybrid fibres improved the shear strength and changed the type of failure of the beam from shear to flexure. Moreover, a method to predict the ultimate shear strength of HTGPC was proposed, and the estimated values were found to be the same as the test results.

Is there a need to reconsider the use of metformin in COVID-19 patients with type 2 diabetes mellitus?

Introduction: Diabetes has been linked with poorer outcomes in coronavirus disease (COVID-19) patients. However, the question to whether continue or withdraw metformin therapy in COVID-19 patients with type 2 diabetes mellitus remains contentious. This study aims to investigate the association between metformin and poor COVID-19 outcomes. Methods: Eligible studies published up to 21 October 2020 were included and appraised for validity, importance, and applicability. The included studies were further ranked according to the level of evidence (LOE). Results: Nine studies were included for further assessments, of which seven studies stated that metformin was not associated with poor COVID-19 outcomes (LOE II-V), while the other two with poorer designs stated otherwise (LOE V). Although metformin may increase the risk of developing acidosis and lactic acidosis (LOE IV), the observed risks were more accentuated in patients with severe COVID-19 disease or kidney impairment and in patients with > 2 daily metformin doses. Interestingly, one study revealed that metformin may even yield therapeutic role in reducing the risk of COVID-19 mortality (LOE II), although further studies are required to confirm these findings. Conclusions: Our findings indicated that metformin may be safely continued in COVID-19 patients. The benefit of metformin therapy with simultaneous continuous monitoring of COVID-19 severity and kidney function may outweigh the risks of lactic acidosis, of which incidence is relatively rare. Supplementary Information: The online version contains supplementary material available at 10.1007/s13410-021-00924-w.

Microbial diversity of a Himalayan forest and characterization of rare actinomycetes for antimicrobial compounds.

The slow pace of discovery of new effective drugs against multi-drug resistant pathogens and largely unsuccessful combinatorial chemistry has resulted in shifting the focus back to natural products as sources of lead molecules for antimicrobial drugs, mainly due to their structural diversity. Investigation of under-explored habitats for potentially novel microorganisms provides for wider chemodiversity. In this study, four actinomycetes, namely UK-274, UK-281, UK-282 and UK-285, which showed broad-spectrum antibacterial and antifungal activities, were isolated from Timli forest range of the biodiversity-rich Himalayan region. 16S rRNA gene sequence analysis showed that the nearest neighbours of the isolates were Actinomadura nitrigenes, Streptomyces niveiscabiei, and Kitasatospora psammotica with similarity values ranging between 97 and 98% suggesting their potential as new isolates. Further morphological and phenotypic characterization strengthened this assumption. Isolate UK-282, of the rare actinomycetes Kitasatospora group, was found to produce antimicrobial activity. Metabolite fingerprinting of ethyl acetate fraction of isolate UK-282 by GC-MS and 1H NMR analysis showed the presence of three novel compounds. The study underlines that a combination approach of bioprospecting of under-studied habitats and focus on rare actinomycetes may result in the identification of novel chemodiversity.