Detalhe da pesquisa
1.
Galaxy Training: A powerful framework for teaching!
PLoS Comput Biol
; 19(1): e1010752, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36622853
2.
Metaproteomic Analysis of Nasopharyngeal Swab Samples to Identify Microbial Peptides in COVID-19 Patients.
J Proteome Res
; 22(8): 2608-2619, 2023 08 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-37450889
3.
A Galaxy of informatics resources for MS-based proteomics.
Expert Rev Proteomics
; 20(11): 251-266, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37787106
4.
An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples.
Clin Proteomics
; 20(1): 14, 2023 Apr 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-37005570
5.
An overview of technologies for MS-based proteomics-centric multi-omics.
Expert Rev Proteomics
; 19(3): 165-181, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35466851
6.
Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms.
J Proteome Res
; 20(2): 1451-1454, 2021 02 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-33393790
7.
Updates on metaQuantome Software for Quantitative Metaproteomics.
J Proteome Res
; 20(4): 2130-2137, 2021 04 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33683127
8.
A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).
Clin Proteomics
; 18(1): 15, 2021 May 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33971807
9.
metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes.
Mol Cell Proteomics
; 18(8 suppl 1): S82-S91, 2019 08 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31235611
10.
A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases.
J Proteome Res
; 19(7): 2772-2785, 2020 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-32396365
11.
Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits.
J Proteome Res
; 19(1): 161-173, 2020 01 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-31793300
12.
QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics.
J Proteome Res
; 18(2): 782-790, 2019 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30582332
13.
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
J Proteome Res
; 18(4): 1461-1476, 2019 04 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-30702898
14.
Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics.
J Proteome Res
; 17(12): 4329-4336, 2018 12 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-30130115
15.
Proteome Profiling in Lung Injury after Hematopoietic Stem Cell Transplantation.
Biol Blood Marrow Transplant
; 22(8): 1383-1390, 2016 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-27155584
16.
Metaproteomic analysis using the Galaxy framework.
Proteomics
; 15(20): 3553-65, 2015 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-26058579
17.
Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.
J Proteome Res
; 13(12): 5898-908, 2014 Dec 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-25301683
18.
Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.
BMC Genomics
; 15: 703, 2014 Aug 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-25149441
19.
A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease.
mSphere
; : e0079323, 2024 May 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-38780289
20.
BAL Fluid Metaproteome in Acute Respiratory Failure.
Am J Respir Cell Mol Biol
; 59(5): 648-652, 2018 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30382775