Graphynes and Graphdiynes for Energy Storage and Catalytic Utilization: Theoretical Insights into Recent Advances.

Carbon allotropes have contributed to all aspects of people's lives throughout human history. As emerging carbon-based low-dimensional materials, graphyne family members (GYF), represented by graphdiyne, have a wide range potential applications due to their superior physical and chemical properties. In particular, graphdiyne (GDY), as the leader of the graphyne family, has been practically applied to various research fields since it was first successfully synthesized. GYF have a large surface area, both sp and sp2 hybridization, and a certain band gap, which was considered to originate from the overlap of carbon 2pz orbitals and the inhomogeneous π-bonds of carbon atoms in different hybridization forms. These properties mean GYF-based materials still have many potential applications to be developed, especially in energy storage and catalytic utilization. Since most of the GYF have yet to be synthesized and applications of successfully synthesized GYF have not been developed for a long time, theoretical results in various application fields should be shared to experimentalists to attract more intentions. In this Review, we summarized and discussed the synthesis, structural properties, and applications of GYF-based materials from the theoretical insights, hoping to provide different viewpoints and comments.

Tandem Catalysis of Ammonia Borane Dehydrogenation and Phenylacetylene Hydrogenation Catalyzed by CeO2 Nanotube/Pd@MIL-53(Al).

Heterogeneously catalyzed, selective hydrogenation in the liquid phase is widely used in industry for the synthesis of chemicals. However, it can be a challenge to prevent active nanoparticles (e.g., palladium) from aggregation/leaching and meanwhile achieve high conversion as well as selectivity, especially under mild conditions. To address these issues, a CeO2 nanotube/Pd@MIL-53(Al) sandwich-structured catalyst has been prepared in which the MIL-53(Al) porous shell can efficiently stabilize the palladium nanoparticles. When this catalyst was used in a tandem catalytic reaction involving the dehydrogenation of ammonia borane and the hydrogenation of phenylacetylene, remarkably, the hydrogen released from the dehydrogenation of ammonia borane boosted the catalytic process, with 100 % conversion of phenylacetylene and a selectivity of 96.2 % for styrene, even at room temperature and atmospheric pressure, within 1 min. This work therefore provides an alternative strategy for balancing the conversion and selectivity of liquid-phase hydrogenation reactions.

γ-Graphyne nanotubes as defect-free catalysts of the oxygen reduction reaction: a DFT investigation.

Graphyne materials are potential candidates to fabricate low-cost but efficient metal-free oxygen reduction reaction (ORR) electrocatalysts. However, due to the coexistence of sp and sp2 carbon atoms in graphyne, some factors playing important roles in determining the ORR activity have received little attention. In the present paper, we carried out thorough density functional theory (DFT) calculations to study the curvature effect on the ORR activity of γ-graphyne. Our results suggest that the (5, 0)-γGyNT would be an excellent metal-free ORR catalyst. Its limiting potential was computed to be 0.80 V and the corresponding active sites occupy up to 16.7% in content, much better than previously reported CACs. Moreover, it is revealed that the curvature can tune the degree of exposure of p electrons of active sites, thus tuning the ORR activity. Our findings are beneficial for further understanding catalytic behavior on graphyne related materials and we suggest a new strategy to design high performance metal-free ORR catalysts.

Graphyne-anchored single Fe atoms as efficient CO oxidation catalysts as predicted by DFT calculations.

By performing first-principles calculations, CO oxidation catalyzed by Fe-embedded defective α-graphyne was systematically investigated. It was found that Fe atoms were strongly anchored at the sp-C vacancy site of α-graphyne with a large binding energy of -5.28 eV and effectively adsorbed and activated O2 molecules. Then, we systematically compared CO oxidation by activated O2via Langmuir-Hinshelwood (LH) and Eley-Rideal (ER) mechanisms. The calculated potential energy surfaces show that the Fe-doped α-graphyne can efficiently oxidize CO via the ER mechanism, in which the threshold of the rate determining step is 0.77 eV. Furthermore, Fe doping shows little effect on the diffusivities of CO, O2, and CO2, which can further enhance its catalytic performance.

An Original Monomer Sampling from a Ready-Made Aß42 NMR Fibril Suggests a Turn-ß-Strand Synergetic Seeding Mechanism.

Aggregation of amyloid beta (Aß) is a central step of Alzheimer's disease. Aß42 monomers are building blocks in the formation of both "on pathway" intermediate structures and "off pathway" oligomers. How to sample an Aß monomer becomes a problem however due to the instinct of Aß high flexibility and diversity as well as aggregation propensity. Currently, (1) most samplings focus on either the ready-made helix-rich 1Z0Q/1IYT NMR structure, or the completely extended conformation, but (2) few on a ready-made Aß NMR fibril (i. e., 2BEG). Here we compare the simulation results from sampling in scheme (1) with that in scheme (2), and find that the coil and ß-sheet contents in the 1Z0Q-sampled system are comparable to the counterparts in the 2BEG-sampled system, but with a large difference in simulation time and dynamics character. 1Z0Q-sampled system not only takes several times longer than the 2BEG-sampled one, and only ß1-seeding dynamics characteristic is observed probably due to far insufficient conformation transition in the limited simulation time. Two dynamics characteristics of Aß42 folding observed experimentally, that either ß1 region or ß2 region aggregates first, reproduce in the present simulations for 2BEG-sampled system however, suggesting a preferential sampling in the future simulation. In addition, a turn-ß-strand synergetic seeding mechanism of aggregation is first proposed based on the trajectory analyses on the four regions of Aß42 chain.

Chiral γ-graphyne nanotubes with almost equivalent bandgaps.

Analogous to conventional carbon nanotubes, single-walled, chiral, γ-graphyne nanotubes (C-γGyNTs) are modeled based on the synthesized 2D γ-graphyne motif, and their electronic properties are investigated via density-functional tight-binding calculations for the first time. The resulting γGyNTs are predicted to be excellent semiconductors with moderate bandgaps ranging from 1.291 eV to 1.928 eV. In addition, the bandgaps of zigzag γGyNTs and armchair γGyNTs show damped oscillatory behaviour, while those of C-γGyNTs do not show any chirality- or diameter-dependent oscillatory behaviour. Interestingly, it is revealed that the (2a, m)-γGyNTs, where a is a positive integer, have nearly identical bandgap values, which provides a fresh method of bandgap manipulation for semiconductor devices that has not yet been reported.

Sulfur-Doped CoO Nanoflakes with Loosely Packed Structure Realizing Enhanced Oxygen Evolution Reaction.

The development of active and inexpensive electrocatalysts for the oxygen evolution reaction (OER) to promote water splitting has always been a major challenge. Cobalt-based oxides and sulfides have been actively investigated due to their low cost and high activity. However, the lower intrinsic conductivity of cobalt oxide and the inferior stability of cobalt sulfides still limit their practical application. Herein, CoO was chosen for a proof-of-concept study in which the anion-doping strategy was used to obtain an excellent catalyst. Sulfur incorporation optimizes the charge-transfer properties and active sites of sulfur-doped CoO (S-CoO) and thus gives rise to improved catalytic activity. Besides sulfur doping, the stable framework of the cobalt oxide was well maintained, and thus high stability of S-CoO throughout the reaction process was ensured.

Effects of double-atom vacancies on the electronic properties of graphyne: a DFT investigation.

Vacancy defects are one of the key impurities that strongly affect the properties of materials. In the present study, some different double-atom vacancies were introduced into α-graphyne (Gy), ßGy, and γGy, depending on their own structural characteristics. Subsequently, density functional theory (DFT) calculations were carried out to evaluate the changes in the structural and electronic properties induced by the double-atom vacancies. The results indicated that the double-atom vacancies only lead to an in-plane structural rearrangement of all three of the Gy systems. It was further revealed that the position of the double-atom vacancies is a crucial factor in the manipulation of the electronic properties of αGy and ßGy as compared with γGy. Our work is expected to yield new Gy materials with the desired properties obtained by altering the position of induced double-atom vacancies.

Bead-Level Characterization of Early-Stage Amyloid†ß42 Aggregates: Nuclei and Ionic Concentration Effects.

A growing body of evidence shows that soluble ß-amyloid (Aß) aggregates, oligomers, and even protofibrils, may be more neurotoxic than fibrils. Here, we employ a coarse grain model to investigate the aggregation of 75mer Aß42 oligomers and the salt effect, the cornerstone of fibril evolution. We find that the oligomer morphologies generated by seventy-five monomers or mixed by both fifty monomers and five preset pentameric nuclei are different (spherical vs. bar-/disk-shaped) and are characterize by a full of coil content (former) and >70 % ß-turn content (latter), indicating a novel role of the nuclei played in the early aggregation stage. The aggregation for the former oligomer adopts a master-nucleus mechanism, whereas for the latter combination of monomers and pentamers a multi-nuclei one is found. The random salt ions will distribute around the aggregates to form several ion shells as the aggregation develops. A unique two-fold gap between the shells is observed in the system containing 100 mm NaCl, endowing the physiological salt concentration with special implications. Meanwhile, an accurate ion-solute cutoff distance (0.66 nm) is predicted, and recommended to apply to many other aggregated biomolecular systems. The present distribution scenario of ions can be generalized to other aggregated systems, although it is strictly dependent on the identity of a specific aggregate, such as its charge and composition.

Periodicity of band gaps of chiral α-graphyne nanotubes.

Electronic structures of zigzag (n,0), armchair (n,n), and chiral (n,m) α-graphyne nanotubes (αGNTs) with n = 2-7 were investigated using density functional tight binding calculations. Oscillatory behavior of the band gaps with a period of every (n - m) = 3 was found for each tube. According to the periodicity, αGNTs could be classified into three families, and their band gaps were in the increasing order of (n - m) = 3a < 3a + 1 < 3a + 2. Among the three families, αGNTs with (n - m) = 3a became effectively semimetallic when the tube size was larger than approximately 2 nm, while the other families remained semiconducting.

Oxygen adsorption on single layer graphyne: a DFT study.

Graphyne is a rising two-dimensional (2D) carbon allotrope with excellent electronic properties. In this paper, theoretical calculations were performed to study the corresponding electronic properties of the oxygenated graphyne. Atomic oxygen when bound to the carbon atom of graphyne forms a stable oxide, with a much larger binding energy compared to that on graphene. Owing to the oxygen adsorption, the α- and ß-graphyne change from a zero-band-gap material to a semiconductor as indicated in the band structure calculations. Moreover, spin splitting was observed from the band structure of the oxygenated γ-graphyne. These electronic properties are tunable by altering the oxygen coverage through changing the supercell size. Our results based on the first-principles calculations imply that oxygenation is a promising method to functionalize graphyne to achieve designated properties.

Stimulus-responsive azobenzene supramolecules: fibers, gels, and hollow spheres.

Novel, stimulus-responsive supramolecular structures in the form of fibers, gels, and spheres, derived from an azobenzene-containing benzenetricarboxamide derivative, are described. Self-assembly of tris(4-((E)-phenyldiazenyl)phenyl)benzene-1,3,5-tricarboxamide (Azo-1) in aqueous organic solvent systems results in solvent dependent generation of microfibers (aq DMSO), gels (aq DMF), and hollow spheres (aq THF). The results of a single crystal X-ray diffraction analysis of Azo-1 (crystallized from a mixture of DMSO and H2O) reveal that it possesses supramolecular columnar packing along the b axis. Data obtained from FTIR analysis and density functional theory (DFT) calculation suggest that multiple hydrogen bonding modes exist in the Azo-1 fibers. UV irradiation of the microfibers, formed in aq DMSO, causes complete melting while regeneration of new fibers occurs upon visible light irradiation. In addition to this photoinduced and reversible phase transition, the Azo-1 supramolecules display a reversible, fiber-to-sphere morphological transition upon exposure to pure DMSO or aq THF. The role played by amide hydrogen bonds in the morphological changes occurring in Azo-1 is demonstrated by the behavior of the analogous, ester-containing tris(4-((E)-phenyldiazenyl)phenyl)benzene-1,3,5-tricarboxylate (Azo-2) and by the hydrogen abstraction in the presence of fluoride anions.

C6N3: A novel 2D carbon nitride with sp-N as support for efficient hydrogen production.

Two-dimensional (2D) carbon nitrides (CxNy) have great potential in advanced fields such as energy harvest and storage. We report a novel 2D CxNy, C6N3, comprising sp-N and sp2-C atoms. Density functional theory calculations indicate that electronically, thermally, and dynamically stable C6N3 is metallic even when cut into very narrow nanoribbons. C6N3 adsorbed single atoms of 3d, 4d, and 5d transition metals to fabricate single-atom catalysts (SACs) for an electrocatalytic hydrogen evolution reaction (HER). Among all SACs studied, Ti-, Cr-, Zr-, and Hf-embedded C6N3 had excellent overall performance including promising stability, moderate binding strength of H and H2, and good electrical conductivity. Our results suggest a novel C6N3 with an sp-N skeleton that has great potential for HER. More investigations are needed to further understand the properties and applications of C6N3 in other fields.

Encapsulated ruthenium nanoparticles activated few-layer carbon frameworks as high robust oxygen evolution electrocatalysts in acidic media.

Noble metals have been extensively employed as high active catalysts for oxygen evolution reaction (OER), are usually subjected to serious surface transformation and poor structural stability, especially in acid media, which need imperatively remedied. Herein, the interfacial engineering of Ru via few-layer carbon (Ru@FLC) was carried out, in which FLC can significantly suppress the corrosion of Ru in acid media, ensuring the efficient interfacial charge transport between Ru and FLC. As a result, a low overpotentials@10 mA cm-2 of 258 mV and small Tafel slopes of 53.1 mV dec-1 for oxygen evolution OER were achieved in acid media. DFT calculations disclose that outer FLC could induce charge redistribution and effectively optimize intermediates free energy adsorption, resulting in greatly reduce the energy barrier for OER. Our work may offer a new avenue to produce progressive OER electrocatalysts for energy-related applications in acid solution.

Solvent effect on the excited-state proton transfer of 7-hydroxyquinoline along a hydrogen-bonded ethanol dimer.

We have studied the solvent effect on structures and potential energy surfaces along proton transfer in the ground and the excited states of 7-hydroxyquinoline interacting with an ethanol dimer using ab initio calculations. The proton transfer is forbidden in the ground state not only in vacuum but also in solvents of n-heptane, ethanol, and dimethyl sulfoxide. In the excited state, although the proton transfer is forbidden in vacuum, it is possible in solvent due to its greatly reduced barrier (∼10 kcal mol(-1)) and highly stabilized product. It has also been found from the calculations that the proton-transfer barrier in the excited state decreases as the dielectric constant of a solvent increases. Our calculations are consistent with experimental results that the proton transfer does not take place in the ground state and that the excited-state proton-transfer rate increases as the solvent polarity increases. Our calculated absorption and emission properties are in excellent agreement with experimental results. Projection factors (reflecting geometrical change from the ground state to the excited state) and reorganization energies for several low frequency vibrations in connection with the excited-state proton transfer are discussed as well.

A simple general descriptor for rational design of graphyne-based bifunctional electrocatalysts toward hydrogen evolution and oxygen reduction reactions.

The high cost and relative scarcity of platinum (Pt) restrict large-scale commercialization of fuel cells, which has spurred researchers to develop low-cost alternatives integrating with high hydrogen evolution reaction (HER) and oxygen reduction reaction (ORR) catalytic activity. Herein, we performed density functional theory (DFT) calculations to explore the electrocatalytic activity of graphyne nanotubes (GyNTs). Several GyNTs were found to be potential metal-free electrocatalysts, with both HER and ORR activity superior to Pt. Moreover, we revealed a linear relationship between the Gibbs free energy change of O2 adsorption (ΔGOOH) and binding energy of H adsorption (ΔEH), which could be attributed to the fact that both the CO bond of OOH adsorption and the CH bond of H adsorption are single bonds. Therefore, ΔEH is proposed as a general descriptor for the rational design of bifunctional graphyne materials toward HERs and ORRs. Our findings provide a simple strategy for the rational design of bifunctional materials.

Porous CoSe2@N-doped carbon nanowires: an ultra-high stable and large-current-density oxygen evolution electrocatalyst.

Nitrogen doped carbon functionalized CoSe2 nanowires (CoSe2@N-C NWs), which act as potential oxygen evolution reaction (OER) catalysts with a large current density and high stability have been reported. Owing to the collaborative optimization of electrical conductivity, free adsorption energy and binding strength of OER intermediates, the prepared CoSe2@N-C NWs exhibit an enhanced 6.61-fold catalytic activity compared to the pristine CoSe2 NW electrode in 1.0 M KOH solution at the overpotential of 340 mV.

Ce-Mn coordination polymer derived hierarchical/porous structured CeO2-MnOx for enhanced catalytic properties.

Catalytic performance is largely dependent on how the structures/compositions of materials are designed. Herein, CeO2-MnOx binary oxide catalysts with a hierarchical/porous structure are prepared by a facile and efficient method, which involves the preparation of the hierarchical Ce-Mn coordination polymer (CPs) precursor, followed by a thermal treatment step. The obtained CeO2-MnOx catalysts not only well inherit the hierarchical structure of Ce-Mn CPs, but also possess porous and hollow features due to the removal of organic ligands and heterogeneous contraction during the calcination process. In addition, the effect of the Mn/Ce ratio is also studied to optimize catalytic performance. Specifically, the as-prepared CeO2-MnOx (5 : 5) catalyst exhibits excellent catalytic performance toward CO oxidation and selective catalytic reduction (SCR) of NO with NH3 at low temperatures. Based on the characterization results, we propose that the special hierarchical structure, high surface area, strong synergistic interaction between CeO2 and MnOx, and high content of active Ce3+, Mn4+ and Osurf are collectively responsible for its remarkable catalytic performance.

Novel Disassembly Mechanisms of Sigmoid Aß42 Protofibrils by Introduced Neutral and Charged Drug Molecules.

Alzheimer's disease (AD) is characterized by fibrillar deposits of amyloid-ß (Aß) peptides and neurofibrillary tangles of Tau proteins. Aß peptides are composed of 37-49 residues, among which the Aß42 isoform is particularly toxic and aggregation-prone and is enriched in the plaques of AD brains and thus considered central to the development of AD. Therefore, disaggregation and disruption provide potential therapeutic approaches to reduce, inhibit, and even reverse Aß aggregation. Here we capture the atomic-level details of the interactions between sigmoid Aß42 fibril 2MXU or 5KK3 and either natural tanshinone compounds TS1 or TS0 or negatively charged ER, proposing two unprecedented disassembly mechanisms. Natural TS1 or TS0 prefers to insert into the cavity together with part at the surface of the 2MXU to open up the mouth and twist the conformation, destroying the ordered growth of subsequent monomers along the fibril axis. For the more compact two-fold 5KK3 , attachment of TS1 or TS0 at the surface including some inserted in cavity results in the separation of the two folds. In the two sigmoid fibril systems, it is no longer applicable for the routine criteria to assess Aß42 fibril disassembly by introduction of these drugs, such as either reduced H-bond number, decreased ß-sheet contents, or both. ER, like-charged to Aß42 fibril, is especially exceptional, and departs utterly from the neutral ones to disassemble Aß42 fibril. Besides the inapplicable routine criteria, positive binding energy between ER and Aß42 fibril also deviates from the hypotheses of "ligands exhibiting greater affinity for the ß-amyloid peptide are effective at altering its aggregation and inhibiting cell toxicity" ( Cairo et al. , Biochemistry 2002 , 41 , 8620 - 8629 ) but results in stronger disassembly effect on the two kinds of sigmoid Aß42 fibrils than neutral TS0 or TS1. The disassembly power of charged ER molecules derives from its stronger deformation ability to the conformation of Aß42 fibril than the neutral ones, twisting the one-fold 2MXU into tapered-shape and separating two-fold 5KK3 in two parts further, which is in great agreement with experimental observations ( Irwin et al. Biomacromolecules 2013 , 14 ( 1 ), 264 - 274 ). The unusual disassembly mechanisms fill the gaps and offer an alternative direction in engineering new inhibitors to treat AD.

Engineering of the d-Band Center of Perovskite Cobaltite for Enhanced Electrocatalytic Oxygen Evolution.

Great efforts have been made to understand and upgrade the kinetically sluggish oxygen evolution reaction (OER). In this study, a series of V-doped LaCoO3 (V-LCO) OER electrocatalysts with optimized d-band centers are fabricated. When utilized as an electrode for the OER, as-formed LaCo0.8 V0.2 O3 (V-LCO-II) requires an overpotential of only 306 mV to drive a geometrical catalytic current density of 10 mA cm-2 . Furthermore, at a given overpotential of 350 mV, the OER current density of V-LCO-II is about 22 times that of pure LaCoO3 (LCO) nanoparticles. Tailoring of the d-band center by V doping facilitates the adsorption of OER intermediates and promotes the formation of amorphous active species on the surface of LCO through the exchange interaction between high-spin V4+ and low-spin Co2+ . This work may create new opportunities for developing other highly active OER catalysts through d-band center engineering.