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1.
Mass Spectrom Rev ; 42(2): 652-673, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-34346101

RESUMO

In a world where information-rich methods of analysis are often sought over those with superior figures of merit, there is a constant search for ionization methods which can be applied across diverse analytical systems. The liquid sampling-atmospheric pressure glow discharge (LS-APGD) is a microplasma device which has the inherent capabilities to operate as a combined atomic and molecular (CAM) ionization source. The plasma is sustained by placement of a high voltage (~500 V, dc) onto an electrolytic solution through which the analyte is generally delivered to the discharge. Judicious choice of the solvent provides a means of obtaining atomic/elemental and/or molecular mass spectra. Presented here are the diverse modes of sample introduction and mass spectrometer platforms to which the LS-APGD has been interfaced. Likewise, representative spectra and figures of merit are presented towards elemental and isotope ratio measurements, as well as application to small organic molecules, organometallic complexes, and intact proteins. It is believed that the diversity of analytical applications and ready implementation across the entirety of mass spectrometry platforms portends a level of versatility not realized with other ionization sources.

2.
Plant J ; 103(5): 1937-1958, 2020 08.
Artigo em Inglês | MEDLINE | ID: mdl-32410239

RESUMO

The establishment of the nitrogen-fixing symbiosis between soybean and Bradyrhizobium japonicum is a complex process. To document the changes in plant metabolism as a result of symbiosis, we utilized laser ablation electrospray ionization-mass spectrometry (LAESI-MS) for in situ metabolic profiling of wild-type nodules, nodules infected with a B. japonicum nifH mutant unable to fix nitrogen, nodules doubly infected by both strains, and nodules formed on plants mutated in the stearoyl-acyl carrier protein desaturase (sacpd-c) gene, which were previously shown to have an altered nodule ultrastructure. The results showed that the relative abundance of fatty acids, purines, and lipids was significantly changed in response to the symbiosis. The nifH mutant nodules had elevated levels of jasmonic acid, correlating with signs of nitrogen deprivation. Nodules resulting from the mixed inoculant displayed similar, overlapping metabolic distributions within the sectors of effective (fix+ ) and ineffective (nifH mutant, fix- ) endosymbionts. These data are inconsistent with the notion that plant sanctioning is cell autonomous. Nodules lacking sacpd-c displayed an elevation of soyasaponins and organic acids in the central necrotic regions. The present study demonstrates the utility of LAESI-MS for high-throughput screening of plant phenotypes. Overall, nodules disrupted in the symbiosis were elevated in metabolites related to plant defense.


Assuntos
Bradyrhizobium/metabolismo , Glycine max/microbiologia , Metabolômica/métodos , Nódulos Radiculares de Plantas/microbiologia , Carbono/metabolismo , Mutação/genética , Nitrogênio/metabolismo , Fixação de Nitrogênio , Nódulos Radiculares de Plantas/metabolismo , Glycine max/metabolismo , Espectrometria de Massas por Ionização por Electrospray , Simbiose
3.
Anal Chem ; 93(33): 11506-11514, 2021 08 24.
Artigo em Inglês | MEDLINE | ID: mdl-34375523

RESUMO

Many fields of basic and applied sciences, including geochronology, astronomy, metabolism, etc., rely on the ability of mass spectrometry to obtain isotope ratio measurements having a high degree of certainty. The inability to resolve difficult isobaric interferences plagues certain measurements. A combined atomic and molecular (CAM) ionization source has been interfaced to a high-field Orbitrap mass spectrometer to alleviate severe atomic, isobaric interferences. This work examines the geochronologically significant 87Sr and 87Rb isotope pair. The mass difference between 87Sr and 87Rb is approximately 0.3 mDa, requiring a minimum resolving power (R = m/Δm) of ∼290,000, a value ∼30× higher than available with sector-field elemental mass spectrometers. Under ultrahigh-resolution conditions, Sr isotope ratio accuracy and precision were evaluated using NIST Sr SRM 987, yielding precision values of <0.1% relative standard deviation (RSD) for the major isotopes and a calculated LOD of 2 pg mL-1 (120 fg of Sr for a 60 µL injection). In addition to manipulating the signal transient length, the total number of ions in the electrostatic trap and the 87Sr/87Rb concentration ratio were found to influence resolution. Ultimately, the isotopes were baseline-resolved with a calculated mass resolution of >1.7M. At equal 87Sr and 87Rb intensities, 87Sr/86Sr was measured as 0.71294 (a relative error of only 0.37%) with a precision of 0.097% RSD, clearly reflecting the alleviation of the isobaric interference.


Assuntos
Isótopos , Espectrometria de Massas , Análise Espectral
4.
Mol Plant Microbe Interact ; 33(2): 272-283, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31544655

RESUMO

Over the past decades, crop yields have risen in parallel with increasing use of fossil fuel-derived nitrogen (N) fertilizers but with concomitant negative impacts on climate and water resources. There is a need for more sustainable agricultural practices, and biological nitrogen fixation (BNF) could be part of the solution. A variety of nitrogen-fixing, epiphytic, and endophytic plant growth-promoting bacteria (PGPB) are known to stimulate plant growth. However, compared with the rhizobium-legume symbiosis, little mechanistic information is available as to how PGPB affect plant metabolism. Therefore, we investigated the metabolic changes in roots of the model grass species Setaria viridis upon endophytic colonization by Herbaspirillum seropedicae SmR1 (fix+) or a fix- mutant strain (SmR54) compared with uninoculated roots. Endophytic colonization of the root is highly localized and, hence, analysis of whole-root segments dilutes the metabolic signature of those few cells impacted by the bacteria. Therefore, we utilized in-situ laser ablation electrospray ionization mass spectrometry to sample only those root segments at or adjacent to the sites of bacterial colonization. Metabolites involved in purine, zeatin, and riboflavin pathways were significantly more abundant in inoculated plants, while metabolites indicative of nitrogen, starch, and sucrose metabolism were reduced in roots inoculated with the fix- strain or uninoculated, presumably due to N limitation. Interestingly, compounds, involved in indole-alkaloid biosynthesis were more abundant in the roots colonized by the fix- strain, perhaps reflecting a plant defense response.


Assuntos
Herbaspirillum , Metaboloma , Setaria (Planta) , Herbaspirillum/fisiologia , Interações Hospedeiro-Patógeno/fisiologia , Fixação de Nitrogênio , Raízes de Plantas/genética , Raízes de Plantas/metabolismo , Raízes de Plantas/microbiologia , Setaria (Planta)/genética , Setaria (Planta)/metabolismo , Setaria (Planta)/microbiologia , Simbiose
5.
Anal Chem ; 91(8): 5028-5035, 2019 04 16.
Artigo em Inglês | MEDLINE | ID: mdl-30821434

RESUMO

Mass spectrometry (MS) is an indispensable analytical tool to capture the array of metabolites within complex biological systems. However, conventional MS-based metabolomic workflows require extensive sample processing and separation resulting in limited throughput and potential alteration of the native molecular states in these systems. Ambient ionization methods, capable of sampling directly from tissues, circumvent some of these issues but require high-performance MS to resolve the molecular complexity within these samples. Here, we demonstrate a unique combination of laser ablation electrospray ionization (LAESI) coupled with a 21 tesla Fourier transform ion cyclotron resonance (21T-FTICR) for direct MS analysis and imaging applications. This analytical platform provides isotopic fine structure information directly from biological tissues, enabling the rapid assignment of molecular formulas and delivering a higher degree of confidence for molecular identification.


Assuntos
Glycine max/metabolismo , Lasers , Limite de Detecção , Imagem Molecular/métodos , Espectrometria de Massas por Ionização por Electrospray , Desenho de Equipamento , Imagem Molecular/instrumentação
6.
Plant J ; 91(2): 340-354, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28394446

RESUMO

Technologies enabling in situ metabolic profiling of living plant systems are invaluable for understanding physiological processes and could be used for rapid phenotypic screening (e.g., to produce plants with superior biological nitrogen-fixing ability). The symbiotic interaction between legumes and nitrogen-fixing soil bacteria results in a specialized plant organ (i.e., root nodule) where the exchange of nutrients between host and endosymbiont occurs. Laser-ablation electrospray ionization mass spectrometry (LAESI-MS) is a method that can be performed under ambient conditions requiring minimal sample preparation. Here, we employed LAESI-MS to explore the well characterized symbiosis between soybean (Glycine max L. Merr.) and its compatible symbiont, Bradyrhizobium japonicum. The utilization of ion mobility separation (IMS) improved the molecular coverage, selectivity, and identification of the detected biomolecules. Specifically, incorporation of IMS resulted in an increase of 153 differentially abundant spectral features in the nodule samples. The data presented demonstrate the advantages of using LAESI-IMS-MS for the rapid analysis of intact root nodules, uninfected root segments, and free-living rhizobia. Untargeted pathway analysis revealed several metabolic processes within the nodule (e.g., zeatin, riboflavin, and purine synthesis). Compounds specific to the uninfected root and bacteria were also detected. Lastly, we performed depth profiling of intact nodules to reveal the location of metabolites to the cortex and inside the infected region, and lateral profiling of sectioned nodules confirmed these molecular distributions. Our results established the feasibility of LAESI-IMS-MS for the analysis and spatial mapping of plant tissues, with its specific demonstration to improve our understanding of the soybean-rhizobial symbiosis.


Assuntos
Bradyrhizobium/fisiologia , Glycine max/metabolismo , Glycine max/microbiologia , Raízes de Plantas/microbiologia , Desenho de Equipamento , Lasers , Raízes de Plantas/metabolismo , Nódulos Radiculares de Plantas/microbiologia , Espectrometria de Massas por Ionização por Electrospray/instrumentação , Espectrometria de Massas por Ionização por Electrospray/métodos , Simbiose
7.
Mol Cell Proteomics ; 15(6): 2021-32, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-27056914

RESUMO

Cyanobacteria are photosynthetic microbes with highly differentiated membrane systems. These organisms contain an outer membrane, plasma membrane, and an internal system of thylakoid membranes where the photosynthetic and respiratory machinery are found. This existence of compartmentalization and differentiation of membrane systems poses a number of challenges for cyanobacterial cells in terms of organization and distribution of proteins to the correct membrane system. Proteomics studies have long sought to identify the components of the different membrane systems in cyanobacteria, and to date about 450 different proteins have been attributed to either the plasma membrane or thylakoid membrane. Given the complexity of these membranes, many more proteins remain to be identified, and a comprehensive catalogue of plasma membrane and thylakoid membrane proteins is needed. Here we describe the identification of 635 differentially localized proteins in Synechocystis sp. PCC 6803 by quantitative iTRAQ isobaric labeling; of these, 459 proteins were localized to the plasma membrane and 176 were localized to the thylakoid membrane. Surprisingly, we found over 2.5 times the number of unique proteins identified in the plasma membrane compared with the thylakoid membrane. This suggests that the protein composition of the thylakoid membrane is more homogeneous than the plasma membrane, consistent with the role of the plasma membrane in diverse cellular processes including protein trafficking and nutrient import, compared with a more specialized role for the thylakoid membrane in cellular energetics. Thus, our data clearly define the two membrane systems with distinct functions. Overall, the protein compositions of the Synechocystis 6803 plasma membrane and thylakoid membrane are quite similar to that of the plasma membrane of Escherichia coli and thylakoid membrane of Arabidopsis chloroplasts, respectively. Synechocystis 6803 can therefore be described as a Gram-negative bacterium with an additional internal membrane system that fulfills the energetic requirements of the cell.


Assuntos
Proteínas de Bactérias/análise , Proteômica/métodos , Synechocystis/metabolismo , Tilacoides/metabolismo , Membrana Celular/metabolismo , Cromatografia Líquida , Metabolismo Energético , Transporte Proteico , Espectrometria de Massas em Tandem
8.
Rapid Commun Mass Spectrom ; 31(18): 1534-1540, 2017 Sep 30.
Artigo em Inglês | MEDLINE | ID: mdl-28696545

RESUMO

RATIONALE: The field of highly accurate and precise isotope ratio analysis, for use in nonproliferation, has been dominated by thermal ionization and inductively coupled plasma mass spectrometry. While these techniques are considered the gold standard for isotope ratio analysis, a downsized instrument capable of accurately and precisely measuring uranium (U) isotope ratios is desirable for field studies or in laboratories with limited infrastructure. METHODS: The developed system interfaces the liquid sampling, an atmospheric pressure glow discharge (LS-APGD) ion source, with a high-resolution Exactive Orbitrap mass spectrometer. With this experimental setup certified U isotope standards and unknown samples were analyzed. The accuracy and precision of the system were then determined. RESULTS: The LS-APGD/Exactive instrument measured a certified reference material of natural U (235 U/238 U = 0.007261) with a 235 U/238 U ratio of 0.007065 and a % relative standard uncertainty of 0.082, meeting the International Target Values for the destructive analysis of U. In addition, when three unknowns were measured and these measurements were compared with the results from an ICP multi-collector instrument, there were no statistical differences between the two instruments. CONCLUSIONS: The LS-APGD/Orbitrap system, while still in the preliminary stages of development, offers highly accurate and precise isotope ratio results that suggest a potential paradigm shift in the world of isotope ratio analysis. Furthermore, the portability of the LS-APGD as an elemental ion source, combined with the small size and smaller operating demands of the Orbitrap, suggests that the instrumentation is capable of being field-deployable.

9.
Analyst ; 142(18): 3333-3340, 2017 Sep 08.
Artigo em Inglês | MEDLINE | ID: mdl-28660919

RESUMO

Solid sampling and analysis methods, such as laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS), are challenged by matrix effects and calibration difficulties. Matrix-matched standards for external calibration are seldom available and it is difficult to distribute spikes evenly into a solid matrix as internal standards. While isotopic ratios of the same element can be measured to high precision, matrix-dependent effects in the sampling and analysis process frustrate accurate quantification and elemental ratio determinations. Here we introduce a potentially general solid matrix transformation approach entailing chemical reactions in molten ammonium bifluoride (ABF) salt that enables the introduction of spikes as tracers or internal standards. Proof of principle experiments show that the decomposition of uranium ore in sealed PFA fluoropolymer vials at 230 °C yields, after cooling, new solids suitable for direct solid sampling by LA. When spikes are included in the molten salt reaction, subsequent LA-ICP-MS sampling at several spots indicate that the spikes are evenly distributed, and that U-235 tracer dramatically improves reproducibility in U-238 analysis. Precisions improved from 17% relative standard deviation for U-238 signals to 0.1% for the ratio of sample U-238 to spiked U-235, a factor of over two orders of magnitude. These results introduce the concept of solid matrix transformation (SMT) using ABF, and provide proof of principle for a new method of incorporating internal standards into a solid for LA-ICP-MS. This new approach, SMT-LA-ICP-MS, provides opportunities to improve calibration and quantification in solids based analysis. Looking forward, tracer addition to transformed solids opens up LA-based methods to analytical methodologies such as standard addition, isotope dilution, preparation of matrix-matched solid standards, external calibration, and monitoring instrument drift against external calibration standards.

10.
Mol Cell Proteomics ; 13(12): 3270-85, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25118246

RESUMO

Reversible protein thiol oxidation is an essential regulatory mechanism of photosynthesis, metabolism, and gene expression in photosynthetic organisms. Herein, we present proteome-wide quantitative and site-specific profiling of in vivo thiol oxidation modulated by light/dark in the cyanobacterium Synechocystis sp. PCC 6803, an oxygenic photosynthetic prokaryote, using a resin-assisted thiol enrichment approach. Our proteomic approach integrates resin-assisted enrichment with isobaric tandem mass tag labeling to enable site-specific and quantitative measurements of reversibly oxidized thiols. The redox dynamics of ∼2,100 Cys-sites from 1,060 proteins under light, dark, and 3-(3,4-dichlorophenyl)-1,1-dimethylurea (a photosystem II inhibitor) conditions were quantified. In addition to relative quantification, the stoichiometry or percentage of oxidation (reversibly oxidized/total thiols) for ∼1,350 Cys-sites was also quantified. The overall results revealed broad changes in thiol oxidation in many key biological processes, including photosynthetic electron transport, carbon fixation, and glycolysis. Moreover, the redox sensitivity along with the stoichiometric data enabled prediction of potential functional Cys-sites for proteins of interest. The functional significance of redox-sensitive Cys-sites in NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, peroxiredoxin (AhpC/TSA family protein Sll1621), and glucose 6-phosphate dehydrogenase was further confirmed with site-specific mutagenesis and biochemical studies. Together, our findings provide significant insights into the broad redox regulation of photosynthetic organisms.


Assuntos
Proteínas de Bactérias/genética , Cisteína/química , Regulação Bacteriana da Expressão Gênica , Proteoma/genética , Compostos de Sulfidrila/química , Synechocystis/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Ciclo do Carbono/efeitos dos fármacos , Ciclo do Carbono/genética , Cisteína/metabolismo , Diurona/toxicidade , Transporte de Elétrons/efeitos dos fármacos , Transporte de Elétrons/genética , Glucosefosfato Desidrogenase/química , Glucosefosfato Desidrogenase/genética , Glucosefosfato Desidrogenase/metabolismo , Gliceraldeído 3-Fosfato Desidrogenase (NADP+)/química , Gliceraldeído 3-Fosfato Desidrogenase (NADP+)/genética , Gliceraldeído 3-Fosfato Desidrogenase (NADP+)/metabolismo , Glicólise/efeitos dos fármacos , Glicólise/genética , Herbicidas/toxicidade , Mutagênese Sítio-Dirigida , Oxirredução , Peroxirredoxinas/química , Peroxirredoxinas/genética , Peroxirredoxinas/metabolismo , Fotoperíodo , Fotossíntese/efeitos dos fármacos , Fotossíntese/genética , Proteoma/química , Proteoma/metabolismo , Estereoisomerismo , Synechocystis/efeitos dos fármacos , Synechocystis/metabolismo
11.
J Proteome Res ; 13(7): 3262-76, 2014 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-24846609

RESUMO

Members of the cyanobacterial genus Cyanothece exhibit considerable variation in physiological and biochemical characteristics. The comparative assessment of the genomes and the proteomes has the potential to provide insights on differences among Cyanothece strains. By applying Sequedex, an annotation-independent method for ascribing gene functions, we confirmed significant species-specific differences of functional genes in different Cyanothece strains, particularly in Cyanothece PCC7425. Using a shotgun proteomics approach based on prefractionation and tandem mass spectrometry, we detected ∼28-48% of the theoretical Cyanothece proteome, depending on the strain. The expression of a total of 642 orthologous proteins was observed in all five Cyanothece strains. These shared orthologous proteins showed considerable correlations in their abundances across different Cyanothece strains. Functional classification indicated that the majority of proteins involved in central metabolic functions such as amino acid, carbohydrate, protein, and RNA metabolism, photosynthesis, respiration, and stress responses were observed to a greater extent in the core proteome, whereas proteins involved in membrane transport, iron acquisition, regulatory functions, flagellar motility, and chemotaxis were observed to a greater extent in the unique proteome. Considerable differences were evident across different Cyanothece strains. Notably, the analysis of Cyanothece PCC7425, which showed the highest number of unique proteins (682), provided direct evidence of evolutionary differences in this strain. We conclude that Cyanothece PCC7425 diverged significantly from the other Cyanothece strains or evolved from a different lineage.


Assuntos
Proteínas de Bactérias/metabolismo , Cyanothece/metabolismo , Proteoma/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Cromatografia por Troca Iônica , Cyanothece/genética , Expressão Gênica , Fixação de Nitrogênio , Fotossíntese , Filogenia , Proteoma/genética , Proteoma/isolamento & purificação , Espectrometria de Massas em Tandem
12.
Anal Bioanal Chem ; 406(29): 7419-30, 2014 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24866712

RESUMO

In this study, we demonstrate the performance of a new mass spectrometry concept called zoom time-of-flight mass spectrometry (zoom-TOFMS). In our zoom-TOFMS instrument, we combine two complementary types of TOFMS: conventional, constant-energy acceleration (CEA) TOFMS and constant-momentum acceleration (CMA) TOFMS to provide complete mass-spectral coverage as well as enhanced resolution and duty factor for a narrow, targeted mass region, respectively. Alternation between CEA- and CMA-TOFMS requires only that electrostatic instrument settings (i.e., reflectron and ion optics) and ion acceleration conditions be changed. The prototype zoom-TOFMS instrument has orthogonal-acceleration geometry, a total field-free distance of 43 cm, and a direct-current glow-discharge ionization source. Experimental results demonstrate that the CMA-TOFMS "zoom" mode offers resolution enhancement of 1.6 times over single-stage acceleration CEA-TOFMS. For the atomic mass range studied here, the maximum resolving power at full-width half-maximum observed for CEA-TOFMS was 1,610 and for CMA-TOFMS the maximum was 2,550. No difference in signal-to-noise (S/N) ratio was observed between the operating modes of zoom-TOFMS when both were operated at equivalent repetition rates. For a 10-kHz repetition rate, S/N values for CEA-TOFMS varied from 45 to 990 and from 67 to 10,000 for CMA-TOFMS. This resolution improvement is the result of a linear TOF-to-mass scale and the energy-focusing capability of CMA-TOFMS. Use of CMA also allows ions outside a given m/z range to be rejected by simple ion-energy barriers to provide a substantial improvement in duty factor.

13.
Appl Spectrosc ; : 37028241263567, 2024 Jun 16.
Artigo em Inglês | MEDLINE | ID: mdl-38881037

RESUMO

The almost-two-centuries history of spectrochemical analysis has generated a body of literature so vast that it has become nearly intractable for experts, much less for those wishing to enter the field. Authoritative, focused reviews help to address this problem but become so granular that the overall directions of the field are lost. This broader perspective can be provided partially by general overviews but then the thinking, experimental details, theoretical underpinnings and instrumental innovations of the original work must be sacrificed. In the present compilation, this dilemma is overcome by assembling the most impactful publications in the area of analytical atomic spectrometry. Each entry was proposed by at least one current expert in the field and supported by a narrative that justifies its inclusion. The entries were then assembled into a coherent sequence and returned to contributors for a round-robin review.

14.
Appl Environ Microbiol ; 79(4): 1070-7, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23204418

RESUMO

Cultures of the cyanobacterial genus Cyanothece have been shown to produce high levels of biohydrogen. These strains are diazotrophic and undergo pronounced diurnal cycles when grown under N(2)-fixing conditions in light-dark cycles. We seek to better understand the way in which proteins respond to these diurnal changes, and we performed quantitative proteome analysis of Cyanothece sp. strains ATCC 51142 and PCC 7822 grown under 8 different nutritional conditions. Nitrogenase expression was limited to N(2)-fixing conditions, and in the absence of glycerol, nitrogenase gene expression was linked to the dark period. However, glycerol induced expression of nitrogenase during part of the light period, together with cytochrome c oxidase (Cox), glycogen phosphorylase (Glp), and glycolytic and pentose phosphate pathway (PPP) enzymes. This indicated that nitrogenase expression in the light was facilitated via higher levels of respiration and glycogen breakdown. Key enzymes of the Calvin cycle were inhibited in Cyanothece ATCC 51142 in the presence of glycerol under H(2)-producing conditions, suggesting a competition between these sources of carbon. However, in Cyanothece PCC 7822, the Calvin cycle still played a role in cofactor recycling during H(2) production. Our data comprise the first comprehensive profiling of proteome changes in Cyanothece PCC 7822 and allow an in-depth comparative analysis of major physiological and biochemical processes that influence H(2) production in both strains. Our results revealed many previously uncharacterized proteins that may play a role in nitrogenase activity and in other metabolic pathways and may provide suitable targets for genetic manipulation that would lead to improvement of large-scale H(2) production.


Assuntos
Proteínas de Bactérias/análise , Cyanothece/química , Hidrogênio/metabolismo , Proteoma/análise , Redes e Vias Metabólicas
15.
Appl Spectrosc ; 77(8): 885-906, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-36636789

RESUMO

Just over a decade ago, a truly outside-of-the-box approach to isotope ratio mass spectrometry (IRMS) was undertaken between research groups at Clemson University and the Pacific Northwest National Laboratory. The original motivation dealt with projections as to whether or not microplasmas could be developed into practical elemental ionization sources, perhaps for transportable analysis applications. In particular, the use of the liquid sampling-atmospheric pressure glow discharge (LS-APGD) was pursued. Its interfacing to an ultra-high resolution Orbitrap platform, proved not only facile, but opened up a wealth of potential applications. Here, we lay out a historical, tutorial description of the interfacing and the evolution of the methodology regarding IRMS of uranium. Practical challenges and opportunities are described, which hopefully provide guidance to further applications in high resolution IRMS. It is hoped that, while detailed and lengthy, the didactic nature of the presentation provides experimental insights and tips, and also serves as an homage to our very good friend, Professor Gary M. Hieftje, whose scientific inspiration and comradery have been immeasurably important in our own careers.

16.
J Proteome Res ; 11(2): 609-19, 2012 Feb 03.
Artigo em Inglês | MEDLINE | ID: mdl-22060561

RESUMO

Understanding the dynamic nature of protein abundances provides insights into protein turnover not readily apparent from conventional, static mass spectrometry measurements. This level of data is particularly informative when surveying protein abundances in biological systems subjected to large perturbations or alterations in environment such as cyanobacteria. Our current analysis expands upon conventional proteomic approaches in cyanobacteria by measuring dynamic changes of the proteome using a (13)C(15)N-l-leucine metabolic labeling in Cyanothece ATCC51142. Metabolically labeled Cyanothece ATCC51142 cells grown under nitrogen-sufficient conditions in continuous light were monitored longitudinally for isotope incorporation over a 48 h period, revealing 414 proteins with dynamic changes in abundances. In particular, proteins involved in carbon fixation, pentose phosphate pathway, cellular protection, redox regulation, protein folding, assembly, and degradation showed higher levels of isotope incorporation, suggesting that these biochemical pathways are important for growth under continuous light. Calculation of relative isotope abundances (RIA) values allowed the measurement of actual active protein synthesis over time for different biochemical pathways under high light exposure. Overall results demonstrated the utility of "non-steady state" pulsed metabolic labeling for systems-wide dynamic quantification of the proteome in Cyanothece ATCC51142 that can also be applied to other cyanobacteria.


Assuntos
Cyanothece/metabolismo , Cyanothece/efeitos da radiação , Proteoma/metabolismo , Proteoma/efeitos da radiação , Proteômica/métodos , Proteínas de Bactérias/análise , Proteínas de Bactérias/metabolismo , Proliferação de Células/efeitos da radiação , Clorofila/análise , Clorofila/metabolismo , Análise por Conglomerados , Luz , Fixação de Nitrogênio , Fotossíntese , Proteoma/análise
17.
Rapid Commun Mass Spectrom ; 26(21): 2526-34, 2012 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-23008070

RESUMO

RATIONALE: Distance-of-flight mass spectrometry (DOFMS) is a velocity-based mass separation technique in which ions are spread across a spatially selective detector according to m/z. In this work, we investigate the practical mass range available for DOFMS with a finite-length detector. METHODS: A glow-discharge DOFMS instrument has been constructed for the analysis of atomic ions. This instrument was modified to accommodate two spatially selective ion detectors, arranged co-linearly, along the mass-separation axis of the analyzer. With this geometry, each detector covers a different portion of the distance-of-flight spectrum and ions are detected simultaneously at the two detectors. The total flight distance covered by the two detectors is 106 mm and simulates DOF detection across a broad mass range. RESULTS: DOFMS theory predicts that ions of all m/z values are focused at a single flight time, but at m/z-dependent flight distances. Therefore, ions that are detected across a wide portion of the DOF axis should all yield the same peak widths. With a focal-plane camera detector and a micro-channel plate/phosphor-screen detection assembly, we found simultaneous, uniform focus of (40)Ar(2)(+) and of (65)Cu(+) and (63)Cu(+) with the ions spread 82 mm across the DOF axis. This detection length, combined with the current instrument geometry, allows for a simultaneously detectable m/z value of 4:3 (high mass-to-low mass). CONCLUSIONS: These results are the first experimental verification that constant-momentum acceleration (CMA)-DOFMS provides energy focus across an extended detection length. Evidence presented demonstrates that DOFMS is amenable to detection with (at least) a 100-mm detector surface. These results indicate that DOFMS is well suited for detection of broader mass ranges.

18.
Anal Bioanal Chem ; 402(1): 261-8, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21910014

RESUMO

A new, low-power ionization source for the elemental analysis of aqueous solutions has recently been described. The liquid sampling-atmospheric pressure glow discharge (LS-APGD) source operates at relatively low currents (<20 mA) and solution flow rates (<50 µL min(-1)), yielding a relatively simple alternative for atomic mass spectrometry applications. The LS-APGD has been interfaced to what is otherwise an organic, LC-MS mass analyzer, the Thermo Scientific Exactive Orbitrap without any modifications, other than removing the electrospray ionization source supplied with that instrument. A glow discharge is initiated between the surface of the test solution exiting a glass capillary and a metallic counter electrode mounted at a 90° angle and separated by a distance of ~5 mm. As with any plasma-based ionization source, there are key discharge operation and ion sampling parameters that affect the intensity and composition of the derived mass spectra, including signal-to-background ratios. We describe here a preliminary parametric evaluation of the roles of discharge current, solution flow rate, argon sheath gas flow rate, and ion sampling distance as they apply on this mass analyzer system. A cursive evaluation of potential matrix effects due to the presence of easily ionized elements indicate that sodium concentrations of up to 50 µg mL(-1) generally cause suppressions of less than 50%, dependant upon the analyte species. Based on the results of this series of studies, preliminary limits of detection (LOD) have been established through the generation of calibration functions. While solution-based concentration LOD levels of 0.02-2 µg mL(-1) are not impressive on the surface, the fact that they are determined via discrete 5 µL injections leads to mass-based detection limits at picogram to single-nanogram levels. The overhead costs associated with source operation (10 W d.c. power, solution flow rates of <50 µL min(-1), and gas flow rates <10 mL min(-1)) are very attractive. While further optimization in the source design is suggested here, it is believed that the LS-APGD ion source may present a practical alternative to inductively coupled plasma sources typically employed in elemental mass spectrometry.

19.
Anal Chem ; 83(7): 2425-9, 2011 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-21355580

RESUMO

A new, low power ionization source for elemental MS analysis of aqueous solutions is described. The liquid sampling-atmospheric pressure glow discharge (LS-APGD) operates by a process wherein the surface of the liquid emanating from a 75 µm i.d. glass capillary acts as the cathode of the direct current glow discharge. Analyte-containing solutions at a flow rate of 100 µL min(-1) are vaporized by the passage of current, yielding gas phase solutes that are subsequently ionized in the <5 W (maximum of 60 mA and 500 V), ~1 mm(3) volume, plasma. The LS-APGD is mounted in place of the normal electrospray ionization source of a Thermo Scientific Exactive Orbitrap mass spectrometer system without any other modifications. Basic operating characteristics are described, including the role of discharge power on mass spectral composition, the ability to obtain ultrahigh resolution elemental isotopic patterns, and demonstration of potential limits of detection based on the injection of aliquots of multielement standards (S/N > 1000 for 5 ng mL(-1) Cs). While much optimization remains, it is believed that the LS-APGD ion source may present a practical alternative to high-powered (>1 kW) plasma sources typically employed in elemental mass spectrometry, particularly for those cases where costs, operational overhead, simplicity, or integrated elemental/molecular analysis considerations are important.


Assuntos
Pressão Atmosférica , Espectrometria de Massas/métodos , Desenho de Equipamento , Espectrometria de Massas/instrumentação , Água/química
20.
Anal Chem ; 83(22): 8552-9, 2011 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-21972781

RESUMO

Distance-of-flight mass spectrometry (DOFMS) is a velocity-based mass-separation technique in which ions are separated in space along the plane of a spatially selective detector. In the present work, a solid-state charge-detection array, the focal-plane camera (FPC), was incorporated into the DOFMS platform. Use of the FPC with our DOFMS instrument resulted in improvements in analytical performance, usability, and versatility over a previous generation instrument that employed a microchannel-plate/phosphor DOF detector. Notably, FPC detection provided resolution improvements of at least a factor of 2, with typical DOF linewidths of 300 µm (R((fwhm)) = 1000). The merits of solid-state detection for DOFMS are evaluated, and methods to extend the DOFMS mass range are considered.


Assuntos
Espectrometria de Massas/instrumentação , Espectrometria de Massas/métodos , Cobre/análise , Chumbo/análise , Estanho/análise , Zinco/análise
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