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1.
Phys Rev Lett ; 120(13): 137201, 2018 Mar 30.
Artigo em Inglês | MEDLINE | ID: mdl-29694199

RESUMO

Excitations in a spin ice behave as magnetic monopoles, and their population and mobility control the dynamics of a spin ice at low temperature. CdEr_{2}Se_{4} is reported to have the Pauling entropy characteristic of a spin ice, but its dynamics are three orders of magnitude faster than the canonical spin ice Dy_{2}Ti_{2}O_{7}. In this Letter we use diffuse neutron scattering to show that both CdEr_{2}Se_{4} and CdEr_{2}S_{4} support a dipolar spin ice state-the host phase for a Coulomb gas of emergent magnetic monopoles. These Coulomb gases have similar parameters to those in Dy_{2}Ti_{2}O_{7}, i.e., dilute and uncorrelated, and so cannot provide three orders faster dynamics through a larger monopole population alone. We investigate the monopole dynamics using ac susceptometry and neutron spin echo spectroscopy, and verify the crystal electric field Hamiltonian of the Er^{3+} ions using inelastic neutron scattering. A quantitative calculation of the monopole hopping rate using our Coulomb gas and crystal electric field parameters shows that the fast dynamics in CdEr_{2}X_{4} (X=Se, S) are primarily due to much faster monopole hopping. Our work suggests that CdEr_{2}X_{4} offer the possibility to study alternative spin ice ground states and dynamics, with equilibration possible at much lower temperatures than the rare earth pyrochlore examples.

2.
Phys Chem Chem Phys ; 19(37): 25369-25379, 2017 Sep 27.
Artigo em Inglês | MEDLINE | ID: mdl-28894859

RESUMO

An essential role of enzymes is to catalyze various chemical reactions in the human body and inhibition of the enzymatic activity by small molecules is the mechanism of action of many drugs or tool compounds used to study biological processes. Here, we investigate the effect on the dynamics of the serine protease α-chymotrypsin when in complex with two different covalently bound inhibitors using elastic incoherent neutron scattering. The results show that the inhibited enzyme displays enhanced dynamics compared to the free form. The difference was prominent at higher temperatures (240-310 K) and the type of motions that differ include both small amplitude motions, such as hydrogen atom rotations around a methyl group, and large amplitude motions, such as amino acid side chain movements. The measurements were analyzed with multivariate methods in addition to the standard univariate methods, allowing for a more in-depth analysis of the types of motions that differ between the two forms. The binding strength of an inhibitor is linked to the changes in dynamics occurring during the inhibitor-enzyme binding event and thus these results may aid in the deconvolution of this fundamental event and in the design of new inhibitors.


Assuntos
Quimotripsina/metabolismo , Difração de Nêutrons , Ligação Proteica , Aminoácidos/química , Fenômenos Biofísicos , Catálise , Elasticidade , Humanos , Hidrogênio , Simulação de Dinâmica Molecular , Movimento (Física)
3.
Phys Chem Chem Phys ; 17(30): 19751-8, 2015 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-26109211

RESUMO

The ability of some materials with a perfectly ordered crystal structure to mimic the heat conduction of amorphous solids is a remarkable physical property that finds applications in numerous areas of materials science, for example, in the search for more efficient thermoelectric materials that enable to directly convert heat into electricity. Here, we unveil the mechanism in which glass-like thermal conductivity emerges in tetrahedrites, a family of natural minerals extensively studied in geology and, more recently, in thermoelectricity. By investigating the lattice dynamics of two tetrahedrites of very close compositions (Cu12Sb2Te2S13 and Cu10Te4S13) but with opposite glasslike and crystal thermal transport by means of powder and single-crystal inelastic neutron scattering, we demonstrate that the former originates from the peculiar chemical environment of the copper atoms giving rise to a strongly anharmonic excess of vibrational states.

4.
Eur Biophys J ; 38(2): 237-44, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18853152

RESUMO

Changes of molecular dynamics in the alpha-to-beta transition associated with amyloid fibril formation were explored on apomyoglobin (ApoMb) as a model system. Circular dichroism, neutron and X-ray scattering experiments were performed as a function of temperature on the protein, at different solvent conditions. A significant change in molecular dynamics was observed at the alpha-to-beta transition at about 55 degrees C, indicating a more resilient high temperature beta structure phase. A similar effect at approximately the same temperature was observed in holo-myoglobin, associated with partial unfolding and protein aggregation. A study in a wide temperature range between 20 and 360 K revealed that a dynamical transition at about 200 K for motions in the 50 ps time scale exists also for a hydrated powder of heat-denatured aggregated ApoMb.


Assuntos
Apoproteínas/química , Modelos Moleculares , Mioglobina/química , Dobramento de Proteína , Multimerização Proteica , Amiloidose/fisiopatologia , Dicroísmo Circular , Cristalografia por Raios X , Difração de Nêutrons , Soluções Farmacêuticas , Estrutura Terciária de Proteína , Temperatura , Termodinâmica
5.
J Phys Condens Matter ; 31(45): 455101, 2019 Nov 13.
Artigo em Inglês | MEDLINE | ID: mdl-31342943

RESUMO

Self- and inter-diffusion coefficients in liquid Ge and dilute Ge-based Ge-Si, Ge-Au, Ge-In, Ge-Ce and Ge-Gd alloys-containing 2 at% additions, respectively, are measured using a comprehensive approach of measuring techniques: quasi-elastic neutron scattering, in situ long-capillary experiments combined with x-ray radiography, and a long-capillary experiment under microgravity conditions. Resulting inter- and Ge self-diffusion coefficients are equal within error bars for each investigated alloy. The interdiffusion coefficients are smaller for the alloys containing Ce and Gd, However, no dependence of the atomic mass of the minor additions, that varies by about a factor of seven between Si and Au, on the diffusion coefficients could be observed. This demonstrates that in a loosely-packed metallic liquid with fast diffusive dynamics the diffusion mechanism is highly collective in nature.

6.
J Phys Condens Matter ; 30(14): 145601, 2018 Apr 11.
Artigo em Inglês | MEDLINE | ID: mdl-29473827

RESUMO

Signatures of absence of a long-range ordered magnetic ground state down to 0.36 K are observed in magnetic susceptibility, specific heat, thermal/electrical transport and inelastic neutron scattering data of the quasi-skutterudite compound Pr3Rh4Sn13 which crystallizes in the Yb3Rh4Sn13-type structure with a cage-like network of Sn atoms. In this structure, Pr3+ occupies a lattice site with D 2d point symmetry having a ninefold degeneracy corresponding to J = 4. The magnetic susceptibility of Pr3Rh4Sn13 shows only a weak temperature dependence below 10 K; otherwise remaining paramagnetic-like in the range, 10 K-300 K. From the inelastic neutron scattering intensity of Pr3Rh4Sn13 recorded at different temperatures, we identify excitations at 4.5(7) K, 5.42(6) K, 10.77(5) K, 27.27(5) K, 192.28(4) K and 308.33(3) K through a careful peak analysis. However, no signatures of long-range magnetic order are observed in the neutron data down to 1.5 K, which is also confirmed by the specific heat data down to 0.36 K. A broad Schottky-like peak is recovered for the magnetic part of the specific heat, C 4f, which suggests the role of crystal electric fields of Pr3+ . A crystalline electric field model consisting of 7 levels was applied to C 4f which leads to the estimation of energy levels at 4.48(2) K, 6.94(4) K, 11.23(8) K, 27.01(5) K, 193.12(6) K and 367.30(2) K. The CEF energy levels estimated from the heat capacity analysis are in close agreement with the excitation energies seen in the neutron data. The Sommerfeld coefficient estimated from the analysis of magnetic specific heat is [Formula: see text] mJ K-2 mol-Pr which suggests the formation of heavy itinerant quasi-particles in Pr3Rh4Sn13. Combining inelastic neutron scattering results, analysis of the specific heat data down to 0.36 K, magnetic susceptibility and, electrical and thermal transport, we establish the absence of long-range ordered magnetic ground state in Pr3Rh4Sn13.

7.
J Phys Condens Matter ; 27(48): 485401, 2015 Dec 09.
Artigo em Inglês | MEDLINE | ID: mdl-26569574

RESUMO

We report inelastic neutron scattering (INS) measurements on the polycrystalline oP60-type clathrate BaGe5, whose crystal structure is related to the type-I clathrate Ba8Ge43□3 and to the cP124-clathrate Ba6Ge25. Our results show that BaGe5 exhibits a similar phonon density of states (PDOS) in the energy range 0-40 meV with respect to Ba8Ge43□3. The low-energy region of the PDOS spectrum (0-10 meV) consists of two peaks at 4.1 and 6.2 meV likely related to Ba-weighted modes. Compared to Ba8Ge43□3, the low-energy region of the phonon spectrum of BaGe5 shows a more complex structure, likely reflecting the presence of three distinct crystallographic sites for Ba. The specific heat data of BaGe5, reexamined in light of the INS results, indicate that the Ba-weighted modes dominate the low-temperature behavior of Cp.

8.
J Phys Chem B ; 118(11): 2913-23, 2014 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-24568616

RESUMO

Proteins and polypeptides are characterized by low-frequency vibrations in the terahertz regime responsible for the so-called "boson peak". The shape and position of this peak are related to the mechanical properties of peptide chains. Amyloid fibrils are ordered macromolecular assemblies, spontaneously formed in nature, characterized by unique biological and nanomechanical properties. In this work, we investigate the effects of the amyloid state and its polymorphism on the boson peak. We used inelastic neutron scattering to probe low-frequency vibrations of the glucagon polypeptide in the native state and in two different amyloid morphologies in both dry and hydrated sample states. The data show that amyloid fibril formation and hydration state affect the softness of the polypeptide not only by changing the distribution of vibrational modes but also, and most significantly, the dissipative mechanisms of collective low-frequency vibrations provided by water-protein and protein-protein interactions. We show how the morphology of the fibril is able to tune these effects. Atomic fluctuations were also measured by elastic neutron scattering. The data confirm that any effect of protein aggregation on fluctuation amplitudes is essentially due to changes in surface exposure to hydration water. The results demonstrate the importance of protein-protein and protein-water interactions in the dynamics and mechanics of amyloid fibrils.


Assuntos
Amiloide/química , Difração de Nêutrons , Microscopia Eletrônica de Transmissão , Espectroscopia de Infravermelho com Transformada de Fourier , Vibração
9.
J R Soc Interface ; 11(97): 20140372, 2014 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-24872501

RESUMO

It is a long debated question whether catalytic activities of enzymes, which lie on the millisecond timescale, are possibly already reflected in variations in atomic thermal fluctuations on the pico- to nanosecond timescale. To shed light on this puzzle, the enzyme human acetylcholinesterase in its wild-type form and complexed with the inhibitor huperzine A were investigated by various neutron scattering techniques and molecular dynamics simulations. Previous results on elastic neutron scattering at various timescales and simulations suggest that dynamical processes are not affected on average by the presence of the ligand within the considered time ranges between 10 ps and 1 ns. In the work presented here, the focus was laid on quasi-elastic (QENS) and inelastic neutron scattering (INS). These techniques give access to different kinds of individual diffusive motions and to the density of states of collective motions at the sub-picoseconds timescale. Hence, they permit going beyond the first approach of looking at mean square displacements. For both samples, the autocorrelation function was well described by a stretched-exponential function indicating a linkage between the timescales of fast and slow functional relaxation dynamics. The findings of the QENS and INS investigation are discussed in relation to the results of our earlier elastic incoherent neutron scattering and molecular dynamics simulations.


Assuntos
Acetilcolinesterase/química , Alcaloides/química , Inibidores da Colinesterase/química , Modelos Químicos , Simulação de Dinâmica Molecular , Sesquiterpenos/química , Sítios de Ligação , Catálise , Ativação Enzimática , Humanos , Cinética , Ligação Proteica , Estatística como Assunto
10.
Phys Rev Lett ; 101(3): 037801, 2008 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-18764296

RESUMO

In the liquid state, glass-forming Ni59.5Nb40.5 and Ni60Nb34.8Sn5.2 alloys exhibit an extraordinarily high packing fraction. The self-correlation functions measured using quasielastic neutron scattering clearly show the slowing down of microscopic dynamics with an increase in packing fraction. The self-diffusivity in liquid Ni60Nb34.8Sn5.2 decreases by about 2 orders of magnitude within a temperature range of 360 K. For these highly fragile systems, the critical packing fraction obtained form the analysis of incoherent data is in excellent agreement with the prediction made by mode-coupling theory. Our results provide the first experimentally observed value for the critical packing fraction in glass-forming metallic liquids.

11.
Phys Rev Lett ; 100(24): 245901, 2008 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-18643600

RESUMO

Quasielastic neutron scattering measurements are combined with molecular dynamics simulations to extract the self-diffusion coefficient of hydrogen in the metal organic frameworks MIL-47(V) and MIL-53(Cr). We find that the diffusivity of hydrogen at low loading is about 2 orders of magnitude higher than in zeolites. Such a high mobility has never been experimentally observed before in any nanoporous materials, although it was predicted in carbon nanotubes. Either 1D or 3D diffusion mechanisms are elucidated depending on the chemical features of the MIL framework.

12.
Phys Chem Chem Phys ; 7(7): 1423-31, 2005 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-19787964

RESUMO

High-resolution neutron backscattering techniques are exploited to study the elastic and quasi-elastic response of the high-density amorphous (HDA), the low-density amorphous (LDA) and the crystalline ice Ic upon temperature changes. Within the temperature ranges of their structural stability (HDA at T < or = 80 K, LDA at T < or = 135 K, ice Ic at T < or = 200 K) the Debye-Waller factors and mean-square displacements characterise all states as harmonic solids. During the transformations HDA --> LDA (T approximately 100 K), LDA --> Ic (T approximately 150 K) and the supposed glass transition with Tg approximately 135 K no relaxation processes can be detected on a time scale t < 4 ns. It can be concluded from coherent scattering measurements (D2O) that LDA starts to recrystallise into ice Ic at T approximately 135 K, i.e. at the supposed Tg. In the framework of the Debye model of harmonic solids HDA reveals the highest Debye temperature among the studied ice phases, which is in full agreement with the lowest Debye level in the generalised density of states derived from time-of-flight neutron scattering experiments. The elastic results at low T indicate the presence of an excess of modes in HDA, which do not obey the Bose statistics.

13.
Phys Rev Lett ; 94(23): 237402, 2005 Jun 17.
Artigo em Inglês | MEDLINE | ID: mdl-16090501

RESUMO

Inelastic neutron scattering results on the spin-orbital liquid in FeSc2S4 are presented. This sulfospinel reveals strong geometric frustration in the spin and in the orbital sector. In the present experiments the orbital liquid is evidenced by a clear spectroscopic signature of a dynamic Jahn-Teller effect with a vibronic splitting 3Gamma approximately 2 meV in agreement with theoretical estimates. The excitations of the spin liquid reveal strong dispersion and can be characterized as cooperative spin excitations in a supercooled paramagnet with a spin gap of Delta approximately 0.2 meV.

14.
Phys Chem Chem Phys ; 7(8): 1617-9, 2005 Apr 21.
Artigo em Inglês | MEDLINE | ID: mdl-19787915

RESUMO

The generalized density of states of LaFe4Sb12 and CeFe4Sb12 has been determined by inelastic neutron scattering and its main features are found to be in agreement with recently published calculations (J. L. Feldman, D. L. Singh, C. Kendziora, D. Mandrus and B. C. Sales, Phys. Rev. B, 2003, 68, 094301). In both compounds a localized vibrational contribution appears superposed on the low-energy Debye response. The distinct inelastic response of La in LaFe4Sb12 is obtained by subtraction of the data for the Ce filled compound and it shows even more clearly the resolution limited peak at 7 meV, attributed to the localized mode of La-atoms.


Assuntos
Antimônio/química , Cério/química , Ferro/química , Lantânio/química , Nêutrons , Termodinâmica
15.
Phys Rev Lett ; 94(12): 125506, 2005 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-15903933

RESUMO

We report elastic and inelastic neutron scattering experiments on different amorphous ice modifications. It is shown that an amorphous structure (HDA') indiscernible from the high-density phase (HDA), obtained by compression of crystalline ice, can be formed from the very high-density phase (vHDA) as an intermediate stage of the transition of vHDA into its low-density modification (LDA'). Both HDA and HDA' exhibit comparable small-angle scattering signals characterizing them as structures heterogeneous on a length scale of a few nanometers. The homogeneous structures are the initial and final transition stages vHDA and LDA', respectively. Despite their apparent structural identity on a local scale, HDA and HDA' differ in their transition kinetics explored by in situ experiments. The activation energy of the vHDA-to-LDA' transition is at least 20 kJ/mol higher than the activation energy of the HDA-to-LDA transition.

16.
Phys Rev Lett ; 85(19): 4100-3, 2000 Nov 06.
Artigo em Inglês | MEDLINE | ID: mdl-11056634

RESUMO

The high frequency dynamics of low-density (LDA) and high-density (HDA) amorphous ice and of cubic ice ( I(c)) has been measured by inelastic x-ray scattering in the 1-15 nm(-1) momentum transfer ( Q) range. Sharp phononlike excitations are observed, and the longitudinal acoustic branch is identified up to Q = 8 nm(-1) in LDA and I(c) and up to 5 nm(-1) in HDA. The narrow width of these excitations is in sharp contrast to the broad features observed in all amorphous systems studied so far. The "crystal-like" behavior of amorphous ices, therefore, implies a considerable reduction in the number of decay channels available to soundlike excitations which is interpreted as a sign of low local disorder.

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