Detalhe da pesquisa
1.
Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.
Brief Bioinform
; 22(5)2021 09 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33624017
2.
Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches.
BMC Genomics
; 23(1): 477, 2022 Jun 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-35764934
3.
Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates.
Plant Biotechnol J
; 20(5): 944-963, 2022 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34990041
4.
In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology.
RNA
; 23(8): 1259-1269, 2017 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-28473453
5.
Erratum to: Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.
Brief Bioinform
; 22(5)2021 Sep 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33899096
6.
Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks.
PLoS Genet
; 9(7): e1003588, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23861667
7.
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.
Bioinformatics
; 28(1): 17-24, 2012 Jan 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-22053076
8.
Dicer-processed small RNAs: rules and exceptions.
J Exp Zool B Mol Dev Evol
; 320(1): 35-46, 2013 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-23165937
9.
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.
PLoS Biol
; 8(9)2010 Sep 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-20838655
10.
Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.
RNA Biol
; 10(7): 1204-10, 2013 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-23702463
11.
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.
Nucleic Acids Res
; 39(Web Server issue): W112-7, 2011 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-21622957
12.
MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data.
Quant Plant Biol
; 3: e19, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-37077980
13.
Traces of post-transcriptional RNA modifications in deep sequencing data.
Biol Chem
; 392(4): 305-13, 2011 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-21345160
14.
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments.
Nucleic Acids Res
; 37(Web Server issue): W68-76, 2009 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-19433510
15.
The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline.
Epigenomes
; 5(2)2021 May 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-34968299
16.
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics.
NAR Genom Bioinform
; 3(4): lqab106, 2021 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-34805989
17.
TargetSpy: a supervised machine learning approach for microRNA target prediction.
BMC Bioinformatics
; 11: 292, 2010 May 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-20509939
18.
Evidence for human microRNA-offset RNAs in small RNA sequencing data.
Bioinformatics
; 25(18): 2298-301, 2009 Sep 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-19584066
19.
Computational prediction of microRNA genes.
Methods Mol Biol
; 1097: 437-56, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-24639171
20.
plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants.
Front Plant Sci
; 5: 708, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-25566282