Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis.

Genomic imprinting, an epigenetic phenomenon leading to parent-of-origin-specific gene expression, has independently evolved in the endosperm of flowering plants and the placenta of mammals-tissues crucial for nurturing embryos. While transposable elements (TEs) frequently colocalize with imprinted genes and are implicated in imprinting establishment, direct investigations of the impact of de novo TE transposition on genomic imprinting remain scarce. In this study, we explored the effects of chemically induced transposition of the Copia element ONSEN on genomic imprinting in Arabidopsis thaliana. Through the combination of chemical TE mobilization and doubled haploid induction, we generated a line with 40 new ONSEN copies. Our findings reveal a preferential targeting of maternally expressed genes (MEGs) for transposition, aligning with the colocalization of H2A.Z and H3K27me3 in MEGs-both previously identified as promoters of ONSEN insertions. Additionally, we demonstrate that chemically-induced DNA hypomethylation induces global transcriptional deregulation in the endosperm, leading to the breakdown of MEG imprinting. This study provides insights into the consequences of chemically induced TE remobilization in the endosperm, revealing that chemically-induced epigenome changes can have long-term consequences on imprinted gene expression.

The complete mitochondrial genome of 3 species of allocreadiids (Digenea, Allocreadiidae): characterization and phylogenetic position within the order Plagiorchiida.

Trematodes of the family Allocreadiidae are primarily found in the intestines of freshwater fishes around the world. The family includes 15 genera and c. 130 species. The last 2 decades have witnessed an increase in the genetic library of its species. Molecular data have been crucial for species delimitation and species description within Allocreadiidae and for understanding their evolutionary and biogeographical history and classification. Here, the mitogenomes of 3 species of allocreadiids were obtained using high throughput sequencing methods. Mitogenomes were compared with other members of the order Plagiorchiida to determine their molecular composition, gene rearrangement and phylogenetic interrelationships. The complete circular mitogenomes of Allocreadium lobatum, Creptotrematina aguirrepequenoi and Wallinia mexicana were 14 424, 13 769 and 13 924 bp long respectively, comprising 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions. Gene arrangements were identical to other Xiphidiatan trematodes. Phylogenetic analyses using the mitogenomes revealed Allocreadiidae as a monophyletic group closely related to other members of the suborder Xiphidiata; A. lobatum was yielded as the sister taxon of C. aguirrepequenoi + W. mexicana. Our study increases the complete mitochondrial genome library of trematodes and strengthens our understanding of the phylogenetic relationships and classification of this parasite group.

The white grunt, Haemulon plumierii (Lacepède, 1801) as paratenic and definitive host of two acanthocephalan species, with the description of a new species of Dollfusentis (Palaeacanthocephala: Leptohynchoididae) from the Yucatán Peninsula, Mexico.

Acanthocephalans are a group of obligate endoparasites that alternate between vertebrates and invertebrates to complete their life cycles. Occasionally, the same individual host acts as a definitive or paratenic host for different acanthocephalan species. In this study, acanthocephalans were sampled in marine fish in three localities of the Yucatán Peninsula; adults and cystacanths were recovered from the intestine and body cavity, respectively, of Haemulon plumierii from off the coast of Sisal, Yucatán. Ribosomal DNA sequences (small and large subunits) were used to test the phylogenetic position of the species of the genus Dollfusentis, whereas the mtDNA gene cox 1 was used for assessing species delimitation. The cox 1 analysis revealed an independent genetic lineage, which is recognized herein as a new species, Dollfusentis mayae n. sp. The new species is morphologically distinguished from the other six congeners by having a cylindrical proboscis armed with 22-25 longitudinal rows bearing 12 hooks each. The cystacanths were morphologically identified as Gorgorhynchus medius by having a cylindrical trunk covered with tiny irregular spines on the anterior region, and a cylindrical proboscis armed with 17-18 longitudinal rows of 21 hooks each; small and large subunit phylogenetic analyses yielded G. medius within the family Isthomosacanthidae, suggesting that Gorgorhynchus should be transferred to this family from Rhadinorhynchidae where it is currently allocated.

Parasaturnius maurepasi n. gen. et n. comb. (Digena: Bunocotylidae) from the stomach of the silver mullet, Mugil curema (Perciformes: Mugilidae) in coastal lagoons of northern Yucatán, Mexico.

Bunocotylid trematodes represent a group of 149 species with a rather complex taxonomic history. The current concept of the subfamily only includes three genera, Bunocotyle, Saturnius, and Robinia. Specimens of a bunocotylid were collected from the silver mullet, M. curema, from a coastal lagoon of Yucatán and identified as belonging to Saturnius. Further detailed morphological study revealed they corresponded to S. maurepasi, a species previously reported from the stripped mullet, Mugil cephalus in Mississippi, USA. Specimens were sequenced for the LSU of nuclear ribosomal RNA gene (28S) to test their phylogenetic position. We discovered that they do not belong in Saturnius since they nest as an independent lineage which is the sister taxa of a clade formed by Robinia, and Saturnius + Bunocotyle; additionally, the new genus exhibits high genetic divergence (10-12%) with respect to species allocated in the other bunocotylid genera. The species S. maurepasi was then transferred to the new genus as Parasaturnius maurepasi n. gen., n. comb. that was created to accommodate it, and was redescribed based on newly sampled specimens.

Molecular data aids pinworm diagnosis in night monkeys (Aotus spp., Primates: Aotidae) with the resurrection of a Trypanoxyuris species (Nematoda: Oxyuridae).

Neotropical primates (Platyrrhines) are commonly parasitized by pinworm nematodes of the genus Trypanoxyuris Vevers, 1923. The taxonomic identity of Trypanoxyuris sampled in night monkeys (Aotus Iliger) has been rather controversial. Two species have been described, namely T. microon (Linstow, 1907) and T. interlabiata (Sandosham, 1950). The latter was synonymized with T. microon considering that the observed morphological differences corresponded to different developmental stages of the nematode rather than to differences between both species. Here, we used an integrative taxonomy approach, based on morphological and molecular data along with host identity, in order to assess the validity of both species. Our results evidenced that these different morphotypes correspond to different and reciprocally monophyletic groups; thus, we propose the resurrection of T. interlabiata. We redescribe both pinworm species using specimens sampled in Aotus monkeys from Colombia and discuss the advantages of combining molecular and morphological data to uncover pinworm diversity, and to understand the potential forces determining the diversification process in pinworms from platyrrhine primates.

Efficiency, Kinetics and Mechanism of 4-Nitroaniline Removal from Aqueous Solutions by Emulsion Liquid Membranes Using Type 1 Facilitated Transport.

4-Nitroaniline (4NA) is a common organic pollutant that is released into the environment during the manufacture and processing of a wide variety of industrial products. This article describes the use of an emulsion liquid membrane process to remove 4NA from aqueous solutions using a type 1 facilitated transport mechanism. Optimization of the removal process was carried out by analyzing the efficiency of 4NA removal from the feed phase and the initial apparent feed/membrane fluxes and permeabilities under different experimental conditions. The kinetics of the removal process was analyzed using a simplified mass transfer model involving an empirical mass transfer coefficient calculated from experimental data, assuming that the concentrations of 4NA in the external aqueous phase and in the internal w/o emulsion are uniform. The results show that there is a very good fit between the experimental and model data and that the variation in the values of the overall mass transfer coefficients with the experimental conditions coincides with that of the removal efficiency mentioned above. The transport mechanism was studied by identifying the rate-controlling step of the removal process, using models described for adsorption processes, due to the strong parallelism between the transport mechanisms in adsorption and emulsion liquid membrane processes.

Parasites (Monogenea) of tilapias Oreochromis niloticus and Coptodon rendalli (Cichlidae) in a river spring in Brazil.

In the present study, we examined 30 individuals of introduced African cichlids, Oreochromis niloticus and Coptodon rendalli, collected in a river spring of the Pardo River, Paranapanema River basin, southeastern Brazil. Based on morphological and molecular analyses of the partial LSU rDNA gene, we identified four species of monogeneans, Cichlidogyrus tilapiae, C. thurstonae, C. mbirizei, and Scutogyrus longicornis on the gills of O. niloticus, whereas individuals of C. rendalli were infested only with C. papernastrema. This is the first record of C. mbirizei and C. papernastrema in tilapias from Brazil. The ecological consequences of the introduction of exotic species of tilapia such as O. niloticus and C. rendalli along with their monogenean parasites in a wild environment represented by a river spring are discussed. Our new molecular data on Cichlidogyrus and Scutogyrus contribute to the investigation of the phylogenetic interrelationships of these widely distributed genera of monogeneans since their species composition is still unsettled.

Title: Parasites (Monogenea) des tilapias Oreochromis niloticus et Coptodon rendalli (Cichlidae) dans une source au Brésil. Abstract: Dans la présente étude, nous avons examiné 30 individus de cichlidés africains introduits, Oreochromis niloticus et Coptodon rendalli, collectés dans une source fluviale du fleuve Pardo, bassin du fleuve Paranapanema, dans le sud-est du Brésil. Sur la base d'analyses morphologiques et moléculaires du gène partiel de l'ADNr LSU, nous avons identifié quatre espèces de monogènes, Cichlidogyrus tilapiae, C. thurstonae, C. mbirizei et Scutogyrus longicornis sur les branchies d'O. niloticus, alors que les individus de C. rendalli étaient infestés uniquement par C. papernastrema. Il s'agit du premier signalement de C. mbirizei et C. papernastrema chez des tilapias du Brésil. Les conséquences écologiques de l'introduction d'espèces exotiques de tilapia telles que O. niloticus et C. rendalli ainsi que leurs monogènes parasites dans un environnement sauvage représenté par une source fluviale sont discutées. Nos nouvelles données moléculaires sur Cichlidogyrus et Scutogyrus contribuent à l'étude des interrelations phylogénétiques de ces genres de monogènes largement distribués puisque leur composition spécifique est encore incertaine.

Diversidad y afinidades biogeográficas de los tiburones, rayas y quimeras (Chondrichthyes: Elasmobranchii, Holocephali) de México / Diversity and biogeographic affinities of sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) of Mexico

Resumen:A pesar de la gran importancia ecológica, evolutiva y económica de los condrictios, su diversidad ha sido escasamente estudiada en México. En este estudio se describe la diversidad de especies de condrictios que se han registrado hasta el momento para México, la cual se compone de 214 especies (111 tiburones, 95 rayas y 8 quimeras) y representa el 17.3 % de las registradas a nivel mundial. Las familias con mayor diversidad de especies son Rajidae (14.5 %), Carcharhinidae (12.1 %), Pentanchidae, Triakidae y Urotrygonidae (5.1 %). En términos de su distribución geográfica, la diversidad del litoral del Pacífico mexicano contiene el 56.1 % del total de aquellas que habitan en las aguas marinas y salobres de México (120 spp., 62 géneros, 37 familias y 14 órdenes); porcentaje muy similar a las que habitan en el litoral del Atlántico con el 55.1 % de las especies (118 especies, 59 géneros, 35 familias y 13 órdenes). Las afinidades biogeográficas de la fauna de condrictios mexicanos son complejas, pues 19.7 % de las especies son circunglobales, 9.9 % trasatlánticas, 1.9 % transpacíficas y 9.4 % son endémicas de la zona económica exclusiva. Además, el 36.6 % de las especies son endémicas del Pacífico oriental, presentan mayor afinidad a la provincia de Cortés (27.7 %), seguida de la de California (20.7 %), Panamá (19.3 %), Galápagos (5.6 %) y Peruano-Chilena (8.9 %). Así mismo, el 33.3 % de las especies son endémicas del Atlántico occidental donde tienen mayor afinidad con la provincia Caribeña (31.9 %), seguido por la Caroliniana (24.4 %) y Brasileña (6.6 %).

Abstract:The diversity of chondrychthyans in Mexico is described. The fauna is composed by 214 species (111 sharks, 95 rays and 8 chimaeras) and represents 17.3 % of the total number of species recorded worldwide. The families with the highest diversity comprise: Rajidae (14.5 %), Carcharhinidae (12.1 %), Pentanchidae, Triakidae, and Urotrygonidae (5.1 %). In terms of geographical distribution, the diversity on the Mexican Pacific slope reaches up to 56.1 % of those species inhabiting Mexican marine and brackish waters (120 species, 62 genera, 37 families and 14 orders); the diversity in the Atlantic slope resulted similar to that on the Mexican Pacific with 55.1 % of the species (118 species, 59 genera, 35 families and 13 orders). The biogeographical affinities of the Mexican chondrychthyan fauna are complex with 19.7 % of the species being circumglobal, 9.9 % transatlantic, 1.9 % transpacific, and 9.4 % endemic to the exclusive economic zone. Additionally, 36.6 % of the species recorded so far are endemic to the Eastern Pacific coast where the species are similar to those found in the Cortez biogeographic province (27.7 %), followed by the Californian (20.7 %), Panamanian (19.3 %), Galapagos (5.6 %) and Peruvian-Chilean (8.9 %). Likewise, 33.3 % are endemic of the Atlantic coast, where species are similar to those found in the Caribbean province (31.9 %), followed by the Carolinean (24.4 %) and the Brazilian (6.6 %). Rev. Biol. Trop. 64 (4): 1469-1486. Epub 2016 December 01.

Helmintofauna de Opisthonema libertate y Harengula thrissina (Osteichthyes: Clupeidae) de la bahía de Chamela, Jalisco, México / Helminthofauna of Opisthonema liberate and Harengula thrissina (Osteichthyes: Clupeidae) from Chamela Bay, Jalisco, Mexico

El registro helmintológico de las "sardinas" Harengula thrissina (N=61) y Opisthonema libertate (N=43)en la Bahía de Chamela, Jalisco, México, establecido en este trabajo, está integrado por 12 y seis especies, respectivamente. De éstas, la que alcanzó los valores más elevados de prevalencia y abundancia en O. libertate fue el nemátodo Pseudoterranova sp. (11.6% y 0.13 gusanos por pez revisado), mientras que para H. thrissina lo fue tremátodo Parahemiurus merus con 49.1% y 1.40 helmintos por hospedero muestreado. La reducida similitud cualitativa y cuantitativa registrada entre las helmintofaunas de ambos hospederos, se atribuye a la naturaleza oportunista de su alimentación (100% de las especies parásitas de H. thrissina y 66% de las de O. libertate las infectan a través de esta vía), así como a la exposición diferencial de ambas especies de hospederos a los helmintos.

Checklist of the helminth parasites of vertebrates in Costa Rica

Helminth parasites of vertebrates have been studied in Costa Rica for more than 50 years. Survey work on this group of parasites is far from complete. We assembled a database with all the records of helminth parasites of wild and domestic vertebrates in Costa Rica. Information was obtained from different sources such as literature search (all published accounts) and parasite collections. Here we present a checklist with a parasite-host list as well as a host-parasite list. Up to now, 303 species have been recorded, including 81 species of digeneans, 23 monogeneans, 63 cestodes, 12 acanthocephalans, and 124 nematodes. In total, 108 species of vertebrates have been studied for helminths in Costa Rica (31 species of fishes, 7 amphibians, 14 reptiles, 20 birds, and 36 mammals). This represents only 3.8% of the vertebrate fauna of Costa Rica since about 2,855 species of vertebrates occur in the country. Interestingly, 58 species (19.1%) were recorded as new species from Costa Rica and most of them are endemic to particular regions. Considering the valuable information that parasites provide because it is synergistic with all the information about the natural history of the hosts, helminth parasites of vertebrates in Costa Rica should be considered within any initiatives to accomplish the national inventory of biological resources. Starting with this compilation work, the Colección de Helmintos de Costa Rica (CHCR), hosted at the Facultad de Microbiología, Universidad de Costa Rica, has re-emerged and it is our hope that it will have the standards of quality to assure that it will become the national depository of helminths in the country.

Addendum to the checklist of the helminth parasites of vertebrates in Costa Rica

In this work, we present an addendum to the "Checklist of the helminth parasites of vertebrates in Costa Rica" with a parasite-host list as well as a host-parasite list. This addendum updates the available information on this group of parasites in Costa Rica, since very recently a new input has been made to describe the helminth fauna of vertebrates, particularly at the Area de Conservación de Guanacaste. In this paper, we add 33 records, representing 23 species. This raises the number of helminth species described in vertebrates from Costa Rica to 325, represented by 89 species of digeneans, 23 of monogeneans. 63 of cestodes, 13 of acanthocephalans, and 137 of nematodes. In total, 133 species of vertebrates have been studied for helminths in Costa Rica (31 species of fishes. 7 amphibians, 18 reptiles, 40 birds, and 37 mammals). Currently, 67 species (20.6 %) have been recorded as new species from Costa Rica and most of them are endemic to particular regions. The Colecci6n de Helmintos de Costa Rica, housed at the Universidad de Costa Rica (UCR), San José, is the depositary of only 23% of the species recorded so far; however this situation is changing and people recognizes.